From owner-freebsd-pkg-fallout@freebsd.org Thu Dec 26 01:17:48 2019 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id AF7061EA04B for ; Thu, 26 Dec 2019 01:17:48 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.nyi.freebsd.org (unknown [127.0.1.3]) by mx1.freebsd.org (Postfix) with ESMTP id 47jsWw50Whz4R9V for ; Thu, 26 Dec 2019 01:17:48 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.nyi.freebsd.org (Postfix) id AB96E1EA04A; Thu, 26 Dec 2019 01:17:48 +0000 (UTC) Delivered-To: pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id AB5591EA049 for ; Thu, 26 Dec 2019 01:17:48 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 47jsWw45bGz4R9T for ; Thu, 26 Dec 2019 01:17:48 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy10.nyi.freebsd.org (beefy10.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:ed]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 8793C21078 for ; Thu, 26 Dec 2019 01:17:48 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy10.nyi.freebsd.org (localhost [127.0.0.1]) by beefy10.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id xBQ1HmB7098100 for ; Thu, 26 Dec 2019 01:17:48 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy10.nyi.freebsd.org (8.15.2/8.15.2/Submit) id xBQ1HmPP098099; Thu, 26 Dec 2019 01:17:48 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 26 Dec 2019 01:17:48 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201912260117.xBQ1HmPP098099@beefy10.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 113i386-default][biology/pbcopper] Failed for pbcopper-0.4.1_4 in build X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 26 Dec 2019 01:17:48 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: head/biology/pbcopper/Makefile 519824 2019-12-11 17:53:48Z jbeich $ Log URL: http://beefy10.nyi.freebsd.org/data/113i386-default/520889/logs/pbcopper-0.4.1_4.log Build URL: http://beefy10.nyi.freebsd.org/build.html?mastername=113i386-default&build=520889 Log: =>> Building biology/pbcopper build started at Thu Dec 26 01:16:21 UTC 2019 port directory: /usr/ports/biology/pbcopper package name: pbcopper-0.4.1_4 building for: FreeBSD 113i386-default-job-06 11.3-RELEASE-p5 FreeBSD 11.3-RELEASE-p5 i386 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/biology/pbcopper/Makefile 519824 2019-12-11 17:53:48Z jbeich $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300062 Jail OSVERSION: 1103000 Job Id: 06 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1103000 UNAME_v=FreeBSD 11.3-RELEASE-p5 UNAME_r=11.3-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/113i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/113i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=113i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/113i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- ports@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix /usr/local --mandir man --infodir share/info --buildtype release --strip _build --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pbcopper/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pbcopper/work HOME=/wrkdirs/usr/ports/biology/pbcopper/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/pbcopper/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pbcopper/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pbcopper/work HOME=/wrkdirs/usr/ports/biology/pbcopper/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/pbcopper/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/pbcopper/work/stage LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pbcopper" EXAMPLESDIR="share/examples/pbcopper" DATADIR="share/pbcopper" WWWDIR="www/pbcopper" ETCDIR="etc/pbcopper" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pbcopper DOCSDIR=/usr/local/share/doc/pbcopper EXAMPLESDIR=/usr/local/share/examples/pbcopper WWWDIR=/usr/local/www/pbcopper ETCDIR=/usr/local/etc/pbcopper --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=11.3-RELEASE-p5 OSREL=11.3 OSVERSION=1103000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> NOTICE: The pbcopper port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===> pbcopper-0.4.1_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz [113i386-default-job-06] Installing pkg-1.12.0... [113i386-default-job-06] Extracting pkg-1.12.0: .......... done ===> pbcopper-0.4.1_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of pbcopper-0.4.1_4 =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The pbcopper port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by pbcopper-0.4.1_4 for building =========================================================================== =================================================== ===> NOTICE: The pbcopper port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by pbcopper-0.4.1_4 for building => SHA256 Checksum OK for PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> NOTICE: The pbcopper port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by pbcopper-0.4.1_4 for building ===> Extracting for pbcopper-0.4.1_4 => SHA256 Checksum OK for PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for pbcopper-0.4.1_4 ===> Applying FreeBSD patches for pbcopper-0.4.1_4 =========================================================================== =================================================== ===> pbcopper-0.4.1_4 depends on executable: meson - not found ===> Installing existing package /packages/All/meson-0.52.1.txz [113i386-default-job-06] Installing meson-0.52.1... [113i386-default-job-06] `-- Installing ninja-1.9.0,2... [113i386-default-job-06] | `-- Installing python37-3.7.6... [113i386-default-job-06] | | `-- Installing gettext-runtime-0.20.1... [113i386-default-job-06] | | `-- Installing indexinfo-0.3.1... [113i386-default-job-06] | | `-- Extracting indexinfo-0.3.1: .... done [113i386-default-job-06] | | `-- Extracting gettext-runtime-0.20.1: .......... done [113i386-default-job-06] | | `-- Installing libffi-3.2.1_3... [113i386-default-job-06] | | `-- Extracting libffi-3.2.1_3: .......... done [113i386-default-job-06] | | `-- Installing readline-8.0.0_1... [113i386-default-job-06] | | `-- Extracting readline-8.0.0_1: .......... done [113i386-default-job-06] | `-- Extracting python37-3.7.6: .......... done [113i386-default-job-06] `-- Extracting ninja-1.9.0,2: ......... done [113i386-default-job-06] `-- Installing py37-setuptools-41.4.0_1... [113i386-default-job-06] `-- Extracting py37-setuptools-41.4.0_1: .......... done [113i386-default-job-06] Extracting meson-0.52.1: .......... done ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> pbcopper-0.4.1_4 depends on executable: meson - found ===> Returning to build of pbcopper-0.4.1_4 ===> pbcopper-0.4.1_4 depends on executable: ninja - found =========================================================================== =================================================== ===> pbcopper-0.4.1_4 depends on shared library: libboost_regex.so - not found ===> Installing existing package /packages/All/boost-libs-1.72.0.txz [113i386-default-job-06] Installing boost-libs-1.72.0... [113i386-default-job-06] `-- Installing icu-65.1,1... [113i386-default-job-06] `-- Extracting icu-65.1,1: .......... done [113i386-default-job-06] Extracting boost-libs-1.72.0: .......... done ===== Message from boost-libs-1.72.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> pbcopper-0.4.1_4 depends on shared library: libboost_regex.so - found (/usr/local/lib/libboost_regex.so) ===> Returning to build of pbcopper-0.4.1_4 =========================================================================== =================================================== ===> Configuring for pbcopper-0.4.1_4 The Meson build system Version: 0.52.1 Source dir: /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1 Build dir: /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/_build Build type: native build Project name: pbcopper Project version: 0.4.1 Appending CXXFLAGS from environment: '-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include ' Appending LDFLAGS from environment: ['-fstack-protector-strong'] Appending CPPFLAGS from environment: '-isystem /usr/local/include' Appending CXXFLAGS from environment: '-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include ' Appending LDFLAGS from environment: ['-fstack-protector-strong'] Appending CPPFLAGS from environment: '-isystem /usr/local/include' C++ compiler for the host machine: c++ (clang 8.0.0 "FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0)") C++ linker for the host machine: GNU ld.bfd 2.17.50 Host machine cpu family: x86 Host machine cpu: i386 Compiler for C++ supports arguments -Wduplicated-cond: NO Compiler for C++ supports arguments -Wduplicated-branches: NO Compiler for C++ supports arguments -Wlogical-op: NO Compiler for C++ supports arguments -Wrestrict: NO Compiler for C++ supports arguments -Wnull-dereference: YES Compiler for C++ supports arguments -Wuseless-cast: NO Compiler for C++ supports arguments -Wdouble-promotion: YES Compiler for C++ supports arguments -Wshadow: YES Compiler for C++ supports arguments -Wformat=1: NO Run-time dependency threads found: YES Run-time dependency Boost found: YES 1.72 Configuring PbcopperVersion.cpp using configuration Build targets in project: 3 Found ninja-1.9.0 at /usr/local/bin/ninja =========================================================================== =================================================== ===> Building for pbcopper-0.4.1_4 [1/22] /usr/local/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 0.4.1 /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/src/utility @COPPER_GIT_SHA1@ '(.*)' /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/src/utility/git describe --always '--dirty=*' [2/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -MF 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -c src/utility/PbcopperGitHash.cpp [3/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -c ../src/cli/CLI.cpp [4/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -c ../src/cli/HelpPrinter.cpp [5/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -c ../src/cli/Interface.cpp [6/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -c ../src/cli/Option.cpp [7/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -c ../src/cli/Parser.cpp [8/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -c ../src/cli/Results.cpp [9/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -c ../src/cli/VersionPrinter.cpp [10/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -c ../src/cli/toolcontract/JsonPrinter.cpp [11/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -c ../src/cli/toolcontract/ResolvedToolContract.cpp [12/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -c ../src/data/Cigar.cpp [13/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -c ../src/data/CigarOperation.cpp [14/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -c ../src/data/MovieName.cpp [15/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -c ../src/data/RSMovieName.cpp [16/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -MF 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -c ../src/logging/Logging.cpp [17/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' -MF 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' -c ../src/utility/CallbackTimer.cpp [18/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -MF 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -c src/utility/PbcopperVersion.cpp [19/22] c++ -o src/libpbcopper.so.0.4.1 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.0.4.1 -Wl,--end-group -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -pthread [20/22] /usr/local/bin/meson --internal symbolextractor src/libpbcopper.so.0.4.1 'src/25a6634@@pbcopper@sha/libpbcopper.so.0.4.1.symbols' [21/22] c++ -Iexamples/cli_demo/c7429bd@@cli_demo@exe -Iexamples/cli_demo -I../examples/cli_demo -Iinclude -I../include -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -MD -MQ 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -MF 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o.d' -o 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -c ../examples/cli_demo/main.cpp FAILED: examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o c++ -Iexamples/cli_demo/c7429bd@@cli_demo@exe -Iexamples/cli_demo -I../examples/cli_demo -Iinclude -I../include -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -MD -MQ 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -MF 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o.d' -o 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -c ../examples/cli_demo/main.cpp In file included from ../examples/cli_demo/main.cpp:2: In file included from ../include/pbcopper/cli/CLI.h:12: In file included from ../include/pbcopper/cli/Interface.h:11: In file included from ../include/pbcopper/cli/Option.h:14: In file included from ../include/pbcopper/json/JSON.h:7: ./include/pbcopper/json/internal/json.hpp:1229:9: error: static_assert failed due to requirement 'sizeof(nlohmann::basic_json, bool, long long, unsigned long long, double, std::allocator, adl_serializer>) == 0' "could not find from_json() method in T's namespace" static_assert(sizeof(BasicJsonType) == 0, ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~ ./include/pbcopper/json/internal/json.hpp:1244:16: note: in instantiation of function template specialization 'nlohmann::detail::from_json_fn::call, bool, long long, unsigned long long, double, std::allocator, adl_serializer>, std::__1::basic_string_view > >' requested here return call(j, val, priority_tag<1> {}); ^ ./include/pbcopper/json/internal/json.hpp:10801:9: note: in instantiation of function template specialization 'nlohmann::detail::from_json_fn::operator(), bool, long long, unsigned long long, double, std::allocator, adl_serializer>, std::__1::basic_string_view > >' requested here ::nlohmann::from_json(std::forward(j), val); ^ ./include/pbcopper/json/internal/json.hpp:13329:36: note: in instantiation of function template specialization 'nlohmann::adl_serializer >, void>::from_json, bool, long long, unsigned long long, double, std::allocator, adl_serializer> &, std::__1::basic_string_view > >' requested here JSONSerializer::from_json(*this, ret); ^ ./include/pbcopper/json/internal/json.hpp:13591:16: note: in instantiation of function template specialization 'nlohmann::basic_json, bool, long long, unsigned long long, double, std::allocator, adl_serializer>::get >, std::__1::basic_string_view >, 0>' requested here return get(); ^ /usr/include/c++/v1/string:888:29: note: in instantiation of function template specialization 'nlohmann::basic_json, bool, long long, unsigned long long, double, std::allocator, adl_serializer>::operator basic_string_view >, 0>' requested here {__self_view __sv = __t; return assign(__sv);} ^ ./examples/cli_demo/main.cpp:82:15: note: in instantiation of function template specialization 'std::__1::basic_string, std::__1::allocator >::operator=, bool, long long, unsigned long long, double, std::allocator, adl_serializer>, void>' requested here s.tempDir = args["temp_dir"]; ^ 1 error generated. ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/biology/pbcopper