Date: Mon, 9 Nov 2020 00:35:58 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r554660 - in head/biology/vt: . files Message-ID: <202011090035.0A90ZwVi085454@repo.freebsd.org>
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Author: jwb Date: Mon Nov 9 00:35:58 2020 New Revision: 554660 URL: https://svnweb.freebsd.org/changeset/ports/554660 Log: biology/vt: Fix build with htslib 1.11 Reported by: fallout Added: head/biology/vt/files/patch-hts__utils.h (contents, props changed) Modified: head/biology/vt/Makefile Modified: head/biology/vt/Makefile ============================================================================== --- head/biology/vt/Makefile Sun Nov 8 23:42:10 2020 (r554659) +++ head/biology/vt/Makefile Mon Nov 9 00:35:58 2020 (r554660) @@ -2,7 +2,7 @@ PORTNAME= vt DISTVERSION= 0.57721 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -10,7 +10,7 @@ COMMENT= Discovers short variants from Next Generation LICENSE= MIT -LIB_DEPENDS= libhts.so.3:biology/htslib \ +LIB_DEPENDS= libhts.so:biology/htslib \ libsvm.so:science/libsvm \ libdeflate.so:archivers/libdeflate \ libcurl.so:ftp/curl Added: head/biology/vt/files/patch-hts__utils.h ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/vt/files/patch-hts__utils.h Mon Nov 9 00:35:58 2020 (r554660) @@ -0,0 +1,11 @@ +--- hts_utils.h.orig 2020-11-08 22:09:58 UTC ++++ hts_utils.h +@@ -47,7 +47,7 @@ typedef struct { + + KHASH_MAP_INIT_STR(s, faidx1_t) + +-struct __faidx_t { ++struct faidx_t { + BGZF *bgzf; + int n, m; + char **name;
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