Date: Fri, 9 Dec 2016 11:44:01 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110armv6-quarterly][science/InsightToolkit] Failed for InsightToolkit-4.10.0 in configure Message-ID: <201612091144.uB9Bi1jr011816@beefy15.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: woodsb02@FreeBSD.org Last committer: woodsb02@FreeBSD.org Ident: $FreeBSD: branches/2016Q4/science/InsightToolkit/Makefile 416478 2016-06-06 18:10:07Z woodsb02 $ Log URL: http://beefy15.nyi.freebsd.org/data/110armv6-quarterly/427878/logs/InsightToolkit-4.10.0.log Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=110armv6-quarterly&build=427878 Log: ====>> Building science/InsightToolkit build started at Fri Dec 9 11:41:52 UTC 2016 port directory: /usr/ports/science/InsightToolkit building for: FreeBSD 110armv6-quarterly-job-20 11.0-RELEASE-p3 FreeBSD 11.0-RELEASE-p3 r309584 arm maintained by: woodsb02@FreeBSD.org Makefile ident: $FreeBSD: branches/2016Q4/science/InsightToolkit/Makefile 416478 2016-06-06 18:10:07Z woodsb02 $ Poudriere version: 3.1.14 Host OSVERSION: 1200010 Jail OSVERSION: 1100122 Job Id: 20 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o UNAME_v=FreeBSD 11.0-RELEASE-p3 r309584 UNAME_r=11.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=armv6 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110armv6-quarterly/ref QEMU_EMULATING=1 UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=InsightToolkit-4.10.0 OSREL=11.0 _OSRELEASE=11.0-RELEASE-p3 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=28 PWD=/usr/local/poudriere/data/.m/110armv6-quarterly/ref/.p/pool MASTERNAME=110armv6-quarterly SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100122 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for InsightToolkit-4.10.0: EXAMPLES=on: Build examples (very time consuming) TESTING=off: Build testing programs (very time consuming) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/InsightToolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/InsightToolkit/work HOME=/wrkdirs/usr/ports/science/InsightToolkit/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/InsightToolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/InsightToolkit/work HOME=/wrkdirs/usr/ports/science/InsightToolkit/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- ITK_VER=4.10 CMAKE_BUILD_TYPE="release" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/InsightToolkit" EXAMPLESDIR="share/examples/InsightToolkit" DATADIR="share/InsightToolkit" WWWDIR="www/InsightToolkit" ETCDIR="etc/InsightToolkit" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/InsightToolkit DOCSDIR=/usr/local/share/doc/InsightToolkit EXAMPLESDIR=/usr/local/share/examples/InsightToolkit WWWDIR=/usr/local/www/InsightToolkit ETCDIR=/usr/local/etc/InsightToolkit --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- =======================<phase: check-sanity >============================ ===> License APACHE20 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> InsightToolkit-4.10.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.8.txz pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended [110armv6-quarterly-job-20] Installing pkg-1.8.8... [110armv6-quarterly-job-20] Extracting pkg-1.8.8: .......... done ===> InsightToolkit-4.10.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of InsightToolkit-4.10.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by InsightToolkit-4.10.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by InsightToolkit-4.10.0 for building => SHA256 Checksum OK for InsightToolkit-4.10.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by InsightToolkit-4.10.0 for building ===> Extracting for InsightToolkit-4.10.0 => SHA256 Checksum OK for InsightToolkit-4.10.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for InsightToolkit-4.10.0 =========================================================================== =======================<phase: build-depends >============================ ===> InsightToolkit-4.10.0 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.6.2.txz pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended [110armv6-quarterly-job-20] Installing cmake-3.6.2... [110armv6-quarterly-job-20] `-- Installing expat-2.2.0... [110armv6-quarterly-job-20] `-- Extracting expat-2.2.0: .......... done [110armv6-quarterly-job-20] `-- Installing cmake-modules-3.6.2... [110armv6-quarterly-job-20] `-- Extracting cmake-modules-3.6.2: .......... done [110armv6-quarterly-job-20] `-- Installing curl-7.51.0_1... [110armv6-quarterly-job-20] | `-- Installing ca_root_nss-3.27.1... [110armv6-quarterly-job-20] | `-- Extracting ca_root_nss-3.27.1: ....... done [110armv6-quarterly-job-20] `-- Extracting curl-7.51.0_1: .......... done [110armv6-quarterly-job-20] `-- Installing libarchive-3.2.1,1... [110armv6-quarterly-job-20] | `-- Installing liblz4-131... [110armv6-quarterly-job-20] | `-- Extracting liblz4-131: .......... done [110armv6-quarterly-job-20] | `-- Installing lzo2-2.09... [110armv6-quarterly-job-20] | `-- Extracting lzo2-2.09: .......... done [110armv6-quarterly-job-20] `-- Extracting libarchive-3.2.1,1: .......... done [110armv6-quarterly-job-20] `-- Installing jsoncpp-1.7.3... [110armv6-quarterly-job-20] `-- Extracting jsoncpp-1.7.3: .......... done [110armv6-quarterly-job-20] Extracting cmake-3.6.2: .......... done Message from ca_root_nss-3.27.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been <snip> -- Enabled ITKNeuralNetworks, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKNrrdIO, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKOptimizers, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKOptimizersv4, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKPDEDeformableRegistration, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKPNG, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKPath, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKPolynomials, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKQuadEdgeMesh, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKQuadEdgeMeshFiltering, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKRegionGrowing, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKRegistrationCommon, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKRegistrationMethodsv4, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKSignedDistanceFunction, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKSmoothing, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKSpatialFunction, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKSpatialObjects, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKStatistics, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKTIFF, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKTestKernel, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKThresholding, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKTransform, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVNL, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVNLInstantiation, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVTK, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVideoCore, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVideoFiltering, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVideoIO, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVoronoi, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKWatersheds, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKZLIB, requested by ITK_BUILD_DEFAULT_MODULES. -- Double correction test returned: 89255.0/1e22 = 8.9255e-18 -- Checking whether header cstdio is available -- Checking whether header cstdio is available - yes -- Checking for Large File Support -- Checking for Large File Support - yes -- Checking whether C++ compiler has 'long long' -- Checking whether C++ compiler has 'long long' - yes -- Checking whether C++ compiler has '__int64' -- Checking whether C++ compiler has '__int64' - no -- Checking whether wstring is available -- Checking whether wstring is available - yes -- Checking whether C compiler has ptrdiff_t in stddef.h -- Checking whether C compiler has ptrdiff_t in stddef.h - yes -- Checking whether C compiler has ssize_t in unistd.h -- Checking whether C compiler has ssize_t in unistd.h - yes -- Checking whether CXX compiler has setenv -- Checking whether CXX compiler has setenv - yes -- Checking whether CXX compiler has unsetenv -- Checking whether CXX compiler has unsetenv - yes -- Checking whether CXX compiler has environ in stdlib.h -- Checking whether CXX compiler has environ in stdlib.h - no -- Checking whether CXX compiler has utimes -- Checking whether CXX compiler has utimes - yes -- Checking whether CXX compiler has utimensat -- Checking whether CXX compiler has utimensat - yes -- Checking whether CXX compiler struct stat has st_mtim member -- Checking whether CXX compiler struct stat has st_mtim member - yes -- Checking whether CXX compiler struct stat has st_mtimespec member -- Checking whether CXX compiler struct stat has st_mtimespec member - yes -- Looking for include files sys/types.h, ifaddrs.h -- Looking for include files sys/types.h, ifaddrs.h - found -- Looking for include file machine/cpu.h -- Looking for include file machine/cpu.h - not found -- Checking whether CXX compiler has rlimit64 -- Checking whether CXX compiler has rlimit64 - no -- Checking whether CXX compiler has atol -- Checking whether CXX compiler has atol - yes -- Checking whether CXX compiler has atoll -- Checking whether CXX compiler has atoll - yes -- Checking whether CXX compiler has _atoi64 -- Checking whether CXX compiler has _atoi64 - no -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Checking whether backtrace works with this C++ compiler -- Checking whether backtrace works with this C++ compiler - yes -- Looking for C++ include dlfcn.h -- Looking for C++ include dlfcn.h - found -- Checking whether dladdr works with this C++ compiler -- Checking whether dladdr works with this C++ compiler - yes -- Looking for C++ include cxxabi.h -- Looking for C++ include cxxabi.h - found -- Checking whether cxxabi works with this C++ compiler -- Checking whether cxxabi works with this C++ compiler - yes -- Checking whether CXX compiler has getloadavg -- Checking whether CXX compiler has getloadavg - yes -- Performing Test VCL_HAS_BOOL -- Performing Test VCL_HAS_BOOL - Success -- Performing Test VCL_HAS_LONG_LONG -- Performing Test VCL_HAS_LONG_LONG - Success -- Performing Test VCL_HAS_TYPENAME -- Performing Test VCL_HAS_TYPENAME - Success -- Performing Test VCL_HAS_EXPORT -- Performing Test VCL_HAS_EXPORT - Success -- Performing Test VCL_HAS_MUTABLE -- Performing Test VCL_HAS_MUTABLE - Success -- Performing Test VCL_HAS_EXPLICIT -- Performing Test VCL_HAS_EXPLICIT - Success -- Performing Test VCL_HAS_DYNAMIC_CAST -- Performing Test VCL_HAS_DYNAMIC_CAST - Success -- Performing Test VCL_HAS_RTTI -- Performing Test VCL_HAS_RTTI - Success -- Performing Test VCL_FOR_SCOPE_HACK -- Performing Test VCL_FOR_SCOPE_HACK - Success -- Performing Test VCL_DEFAULT_VALUE -- Performing Test VCL_DEFAULT_VALUE - Success -- Performing Test VCL_HAS_MEMBER_TEMPLATES -- Performing Test VCL_HAS_MEMBER_TEMPLATES - Success -- Performing Test VCL_CAN_DO_PARTIAL_SPECIALIZATION -- Performing Test VCL_CAN_DO_PARTIAL_SPECIALIZATION - Success -- Performing Test VCL_ALLOWS_INLINE_INSTANTIATION -- Performing Test VCL_ALLOWS_INLINE_INSTANTIATION - Success -- Performing Test VCL_NEEDS_INLINE_INSTANTIATION -- Performing Test VCL_NEEDS_INLINE_INSTANTIATION - Success -- Performing Test VCL_STATIC_CONST_INIT_INT -- Performing Test VCL_STATIC_CONST_INIT_INT - Success -- Performing Test VCL_STATIC_CONST_INIT_NO_DEFN -- Performing Test VCL_STATIC_CONST_INIT_NO_DEFN - Success -- Performing Test VCL_STATIC_CONST_INIT_FLOAT -- Performing Test VCL_STATIC_CONST_INIT_FLOAT - Failed -- Performing Test VCL_CAN_DO_STATIC_TEMPLATE_MEMBER -- Performing Test VCL_CAN_DO_STATIC_TEMPLATE_MEMBER - Success -- Performing Test VCL_CAN_DO_NON_TYPE_FUNCTION_TEMPLATE_PARAMETER -- Performing Test VCL_CAN_DO_NON_TYPE_FUNCTION_TEMPLATE_PARAMETER - Success -- Performing Test VCL_NEED_FRIEND_FOR_TEMPLATE_OVERLOAD -- Performing Test VCL_NEED_FRIEND_FOR_TEMPLATE_OVERLOAD - Success -- Performing Test VCL_OVERLOAD_CAST -- Performing Test VCL_OVERLOAD_CAST - Failed -- Performing Test VCL_NULL_TMPL_ARGS -- Performing Test VCL_NULL_TMPL_ARGS - Failed -- Performing Test VCL_NO_STATIC_DATA_MEMBERS -- Performing Test VCL_NO_STATIC_DATA_MEMBERS - Success -- Performing Test VCL_HAS_TEMPLATE_SYMBOLS -- Performing Try-Run Test VCL_HAS_TEMPLATE_SYMBOLS - Test Compilation Failed -- Performing Test VCL_CAN_DO_COMPLETE_DEFAULT_TYPE_PARAMETER -- Performing Test VCL_CAN_DO_COMPLETE_DEFAULT_TYPE_PARAMETER - Success -- Performing Test VCL_CAN_DO_TEMPLATE_DEFAULT_TYPE_PARAMETER -- Performing Test VCL_CAN_DO_TEMPLATE_DEFAULT_TYPE_PARAMETER - Success -- Performing Test VCL_TEMPLATE_MATCHES_TOO_OFTEN -- Performing Test VCL_TEMPLATE_MATCHES_TOO_OFTEN - Success -- Performing Test VCL_HAS_EXCEPTIONS -- Performing Test VCL_HAS_EXCEPTIONS - Success -- Performing Test VCL_HAS_NAMESPACES -- Performing Test VCL_HAS_NAMESPACES - Success -- Performing Test VCL_ALLOWS_NAMESPACE_STD -- Performing Test VCL_ALLOWS_NAMESPACE_STD - Success -- Performing Test VCL_NEEDS_NAMESPACE_STD -- Performing Test VCL_NEEDS_NAMESPACE_STD - Failed -- Performing Test VCL_HAS_SLICED_DESTRUCTOR_BUG -- Performing Test VCL_HAS_SLICED_DESTRUCTOR_BUG - Success -- Performing Test VCL_HAS_WORKING_STRINGSTREAM -- Performing Test VCL_HAS_WORKING_STRINGSTREAM - Success -- Performing Test VXL_UNISTD_USLEEP_IS_VOID -- Performing Test VXL_UNISTD_USLEEP_IS_VOID - Success -- Performing Test VXL_STDLIB_HAS_QSORT -- Performing Test VXL_STDLIB_HAS_QSORT - Success -- Performing Test VXL_C_MATH_HAS_LROUND -- Performing Test VXL_C_MATH_HAS_LROUND - Success -- Performing Test VCL_HAS_LFS -- Performing Test VCL_HAS_LFS - Success -- Performing Test VXL_HAS_DBGHELP_H -- Performing Test VXL_HAS_DBGHELP_H - Failed -- Performing Test VCL_DEFINE_SPECIALIZATION -- Performing Test VCL_DEFINE_SPECIALIZATION - Success -- Performing Test VCL_CANNOT_SPECIALIZE_CV -- Performing Test VCL_CANNOT_SPECIALIZE_CV - Success -- Performing Test VXL_PIC_COMPATIBLE -- Performing Test VXL_PIC_COMPATIBLE - Success -- Looking for C++ include cassert -- Looking for C++ include cassert - found -- Looking for C++ include ciso646 -- Looking for C++ include ciso646 - found -- Looking for C++ include csetjmp -- Looking for C++ include csetjmp - found -- Looking for C++ include cstdio -- Looking for C++ include cstdio - found -- Looking for C++ include ctime -- Looking for C++ include ctime - found -- Looking for C++ include cctype -- Looking for C++ include cctype - found -- Looking for C++ include climits -- Looking for C++ include climits - found -- Looking for C++ include csignal -- Looking for C++ include csignal - found -- Looking for C++ include cstdlib CMake Error: Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTC_bdbd4/fast" -- Looking for C++ include cstdlib - not found CMake Error at Modules/ThirdParty/VNL/src/vxl/config/cmake/config/VXLIntrospectionConfig.cmake:488 (message): Compiler must have #include <cstdlib> Call Stack (most recent call first): Modules/ThirdParty/VNL/src/vxl/CMakeLists.txt:180 (include) -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/InsightToolkit/work/.build/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/science/InsightToolkit/work/.build/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/science/InsightToolkit
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