Date: Thu, 4 Mar 2021 02:15:06 GMT From: pkg-fallout@FreeBSD.org To: bofh@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 130releng-amd64-quarterly][biology/seaview] Failed for seaview-5.0.4, 1 in build Message-ID: <202103040215.1242F6Ub029404@beefy14.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: bofh@FreeBSD.org Last committer: bofh@FreeBSD.org Ident: $FreeBSD: branches/2021Q1/biology/seaview/Makefile 539893 2020-06-22 17:34:44Z bofh $ Log URL: http://beefy14.nyi.freebsd.org/data/130releng-amd64-quarterly/567285/logs/seaview-5.0.4,1.log Build URL: http://beefy14.nyi.freebsd.org/build.html?mastername=130releng-amd64-quarterly&build=567285 Log: =>> Building biology/seaview build started at Thu Mar 4 02:14:44 UTC 2021 port directory: /usr/ports/biology/seaview package name: seaview-5.0.4,1 building for: FreeBSD 130releng-amd64-quarterly-job-14 13.0-BETA4 FreeBSD 13.0-BETA4 1300139 amd64 maintained by: bofh@FreeBSD.org Makefile ident: $FreeBSD: branches/2021Q1/biology/seaview/Makefile 539893 2020-06-22 17:34:44Z bofh $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1400000 Jail OSVERSION: 1300139 Job Id: 14 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300139 UNAME_v=FreeBSD 13.0-BETA4 1300139 UNAME_r=13.0-BETA4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/130releng-amd64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/130releng-amd64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=130releng-amd64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/130releng-amd64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- bofh@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seaview/work HOME=/wrkdirs/usr/ports/biology/seaview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seaview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- HELPFILE='-DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\"' PHYMLNAME='-DPHYMLNAME=\"phyml\"' IFLTK='-I/usr/local/include' LFLTK='-L/usr/local/lib' USE_XFT='-DUSE_XFT' OPT="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seaview/work HOME=/wrkdirs/usr/ports/biology/seaview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seaview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL _SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seaview" EXAMPLESDIR="share/examples/seaview" DATADIR="share/seaview" WWWDIR="www/seaview" ETCDIR="etc/seaview" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seaview DOCSDIR=/usr/local/share/doc/seaview EXAMPLESDIR=/usr/local/share/examples/seaview WWWDIR=/usr/local/www/seaview ETCDIR=/usr/local/etc/seaview --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-BETA4 OSREL=13.0 OSVERSION=1300139 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> seaview-5.0.4,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.3.txz [130releng-amd64-quarterly-job-14] Installing pkg-1.16.3... [130releng-amd64-quarterly-job-14] Extracting pkg-1.16.3: .......... done ===> seaview-5.0.4,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seaview-5.0.4,1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seaview-5.0.4,1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seaview-5.0.4,1 for building => SHA256 Checksum OK for seaview_5.0.4.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seaview-5.0.4,1 for building ===> Extracting for seaview-5.0.4,1 => SHA256 Checksum OK for seaview_5.0.4.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for seaview-5.0.4,1 /usr/bin/sed -i.bak -e 's|^\(CC\) |#\1 | ; s|-ldl || ; s|^\(CXX\) |#\1 |' /wrkdirs/usr/ports/biology/seaview/work/seaview/Makefile =========================================================================== =======================<phase: build-depends >============================ ===> seaview-5.0.4,1 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.txz [130releng-amd64-quarterly-job-14] Installing gmake-4.3_2... [130releng-amd64-quarterly-job-14] `-- Installing gettext-runtime-0.21... [130releng-amd64-quarterly-job-14] | `-- Installing indexinfo-0.3.1... [130releng-amd64-quarterly-job-14] | `-- Extracting indexinfo-0.3.1: .... done [130releng-amd64-quarterly-job-14] `-- Extracting gettext-runtime-0.21: .......... done [130releng-amd64-quarterly-job-14] Extracting gmake-4.3_2: .......... done ===> seaview-5.0.4,1 depends on package: gmake>=4.3 - found ===> Returning to build of seaview-5.0.4,1 ===> seaview-5.0.4,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found ===> Installing existing package /packages/All/libX11-1.6.12,1.txz [130releng-amd64-quarterly-job-14] Installing libX11-1.6.12,1... [130releng-amd64-quarterly-job-14] `-- Installing libxcb-1.14_1... [130releng-amd64-quarterly-job-14] | `-- Installing libXau-1.0.9... [130releng-amd64-quarterly-job-14] | `-- Extracting libXau-1.0.9: .......... done [130releng-amd64-quarterly-job-14] | `-- Installing libXdmcp-1.1.3... <snip> [130releng-amd64-quarterly-job-14] | | `-- Extracting libpciaccess-0.16: ......... done [130releng-amd64-quarterly-job-14] | | `-- Installing libxml2-2.9.10_2... [130releng-amd64-quarterly-job-14] | | `-- Extracting libxml2-2.9.10_2: .......... done [130releng-amd64-quarterly-job-14] | | `-- Extracting libdrm-2.4.103,1: .......... done [130releng-amd64-quarterly-job-14] | | `-- Installing libunwind-20200331_1... [130releng-amd64-quarterly-job-14] | | `-- Extracting libunwind-20200331_1: .......... done [130releng-amd64-quarterly-job-14] | | `-- Installing libxshmfence-1.3... [130releng-amd64-quarterly-job-14] | | `-- Extracting libxshmfence-1.3: ......... done [130releng-amd64-quarterly-job-14] | | `-- Installing wayland-1.18.0_4... [130releng-amd64-quarterly-job-14] | | `-- Installing libepoll-shim-0.0.20200602... [130releng-amd64-quarterly-job-14] | | `-- Extracting libepoll-shim-0.0.20200602: .......... done [130releng-amd64-quarterly-job-14] | | `-- Installing libffi-3.3_1... [130releng-amd64-quarterly-job-14] | | `-- Extracting libffi-3.3_1: .......... done [130releng-amd64-quarterly-job-14] | | `-- Extracting wayland-1.18.0_4: .......... done [130releng-amd64-quarterly-job-14] | | `-- Installing zstd-1.4.5_1... [130releng-amd64-quarterly-job-14] | | `-- Installing liblz4-1.9.3,1... [130releng-amd64-quarterly-job-14] | | `-- Extracting liblz4-1.9.3,1: .......... done [130releng-amd64-quarterly-job-14] | | `-- Extracting zstd-1.4.5_1: .......... done [130releng-amd64-quarterly-job-14] | `-- Extracting mesa-libs-20.2.3: .......... done [130releng-amd64-quarterly-job-14] `-- Extracting libGLU-9.0.1: ...... done [130releng-amd64-quarterly-job-14] Extracting fltk-1.3.5: .......... done ===> seaview-5.0.4,1 depends on shared library: libfltk.so - found (/usr/local/lib/libfltk.so) ===> Returning to build of seaview-5.0.4,1 ===> seaview-5.0.4,1 depends on shared library: libfontconfig.so - found (/usr/local/lib/libfontconfig.so) ===> seaview-5.0.4,1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> seaview-5.0.4,1 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so) =========================================================================== =======================<phase: configure >============================ ===> Configuring for seaview-5.0.4,1 =========================================================================== =======================<phase: build >============================ ===> Building for seaview-5.0.4,1 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/seaview/work/seaview' c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF least_squares_brl.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF tbe.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treerecs_draw.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF FL/Fl_SVG_Image.cxx cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/raa_acnuc.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/parser.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/md5.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/zsockr.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/misc_acnuc.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/dnapars.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/protpars.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/seq.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/phylip.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/lwl.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/bionj.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/phyml_util.c c++ -o seaview -fstack-protector-strong seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -lpthread -lz ld: error: duplicate symbol: progname >>> defined at seaview.cxx >>> seaview.o:(progname) >>> defined at dnapars.c >>> dnapars.o:(.bss+0x190) ld: error: duplicate symbol: ancseq >>> defined at dnapars.c >>> dnapars.o:(ancseq) >>> defined at protpars.c >>> protpars.o:(.bss+0x7B6) ld: error: duplicate symbol: bestrees >>> defined at dnapars.c >>> dnapars.o:(bestrees) >>> defined at protpars.c >>> protpars.o:(.bss+0x810) ld: error: duplicate symbol: chars >>> defined at dnapars.c >>> dnapars.o:(chars) >>> defined at protpars.c >>> protpars.o:(.bss+0x3C8) ld: error: duplicate symbol: col >>> defined at dnapars.c >>> dnapars.o:(col) >>> defined at protpars.c >>> protpars.o:(.bss+0x798) ld: error: duplicate symbol: enterorder >>> defined at dnapars.c >>> dnapars.o:(enterorder) >>> defined at protpars.c >>> protpars.o:(.bss+0x800) ld: error: duplicate symbol: firstplotblock >>> defined at dnapars.c >>> dnapars.o:(firstplotblock) >>> defined at protpars.c >>> protpars.o:(.bss+0x459) ld: error: duplicate symbol: firstset >>> defined at dnapars.c >>> dnapars.o:(firstset) >>> defined at protpars.c >>> protpars.o:(.bss+0x418) ld: error: duplicate symbol: fsteps >>> defined at dnapars.c >>> dnapars.o:(fsteps) >>> defined at protpars.c >>> protpars.o:(.bss+0x808) ld: error: duplicate symbol: garbage >>> defined at dnapars.c >>> dnapars.o:(garbage) >>> defined at protpars.c >>> protpars.o:(.bss+0x400) ld: error: duplicate symbol: infilename >>> defined at dnapars.c >>> dnapars.o:(infilename) >>> defined at protpars.c >>> protpars.o:(.bss+0x460) ld: error: duplicate symbol: inseed >>> defined at dnapars.c >>> dnapars.o:(inseed) >>> defined at protpars.c >>> protpars.o:(.bss+0x7A0) ld: error: duplicate symbol: inseed0 >>> defined at dnapars.c >>> dnapars.o:(inseed0) >>> defined at protpars.c >>> protpars.o:(.bss+0x7A8) ld: error: duplicate symbol: intreename >>> defined at dnapars.c >>> dnapars.o:(intreename) >>> defined at protpars.c >>> protpars.o:(.bss+0x600) ld: error: duplicate symbol: ith >>> defined at dnapars.c >>> dnapars.o:(ith) >>> defined at protpars.c >>> protpars.o:(.bss+0x438) ld: error: duplicate symbol: javarun >>> defined at dnapars.c >>> dnapars.o:(javarun) >>> defined at protpars.c >>> protpars.o:(.bss+0x458) ld: error: duplicate symbol: jumb >>> defined at dnapars.c >>> dnapars.o:(jumb) >>> defined at protpars.c >>> protpars.o:(.bss+0x440) ld: error: duplicate symbol: jumble >>> defined at dnapars.c >>> dnapars.o:(jumble) >>> defined at protpars.c >>> protpars.o:(.bss+0x428) ld: error: duplicate symbol: justwts >>> defined at dnapars.c >>> dnapars.o:(justwts) >>> defined at protpars.c >>> protpars.o:(.bss+0x7B5) ld: error: duplicate symbol: lastrearr >>> defined at dnapars.c >>> dnapars.o:(lastrearr) >>> defined at protpars.c >>> protpars.o:(.bss+0x840) ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors) c++: error: linker command failed with exit code 1 (use -v to see invocation) gmake[1]: *** [Makefile:46: seaview] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/seaview/work/seaview' *** Error code 1 Stop. make: stopped in /usr/ports/biology/seaview
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