From owner-freebsd-python@freebsd.org Sat Jul 4 22:37:40 2015 Return-Path: Delivered-To: freebsd-python@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 45BBC9BDD for ; Sat, 4 Jul 2015 22:37:40 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 29E2E1EBF for ; Sat, 4 Jul 2015 22:37:40 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: by mailman.ysv.freebsd.org (Postfix) id 26D799BDB; Sat, 4 Jul 2015 22:37:40 +0000 (UTC) Delivered-To: python@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 254F49BDA for ; Sat, 4 Jul 2015 22:37:40 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2001:1900:2254:206a::16:76]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id E35051EBC for ; Sat, 4 Jul 2015 22:37:39 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from bugs.freebsd.org ([127.0.1.118]) by kenobi.freebsd.org (8.14.9/8.14.9) with ESMTP id t64MbdA9019083 for ; Sat, 4 Jul 2015 22:37:39 GMT (envelope-from bugzilla-noreply@freebsd.org) From: bugzilla-noreply@freebsd.org To: python@FreeBSD.org Subject: [Bug 201348] devel/py-tables: libgcc_s.so.1 raises ImportError on libgfortran.so.3 not found due to missing rpath Date: Sat, 04 Jul 2015 22:37:39 +0000 X-Bugzilla-Reason: CC X-Bugzilla-Type: new X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Some People X-Bugzilla-Who: john@saltant.com X-Bugzilla-Status: New X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: wen@FreeBSD.org X-Bugzilla-Target-Milestone: --- X-Bugzilla-Flags: maintainer-feedback? X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform op_sys bug_status bug_severity priority component assigned_to reporter cc flagtypes.name attachments.created Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 7bit X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated MIME-Version: 1.0 X-BeenThere: freebsd-python@freebsd.org X-Mailman-Version: 2.1.20 Precedence: list List-Id: FreeBSD-specific Python issues List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 04 Jul 2015 22:37:40 -0000 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=201348 Bug ID: 201348 Summary: devel/py-tables: libgcc_s.so.1 raises ImportError on libgfortran.so.3 not found due to missing rpath Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: wen@FreeBSD.org Reporter: john@saltant.com CC: python@FreeBSD.org Flags: maintainer-feedback?(wen@FreeBSD.org) Assignee: wen@FreeBSD.org Created attachment 158354 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=158354&action=edit devel/py-tables: Add USES=fortran to link extensions with gcc rpath Upon import tables, the following ImportError exception is raised. ImportError: /lib/libgcc_s.so.1: version GCC_4.6.0 required by /usr/local/lib/gcc48/libgfortran.so.3 not found The root cause is that utilsextension.so is linked without -Wl,-rpath=${_GCC_RUNTIME} (/usr/local/lib/gcc48, in this case) combined with the dependency on numpy. For full analysis see: https://lists.freebsd.org/pipermail/freebsd-python/2015-June/008420.html A possible fix for this bug is available in the attached patch, which effectively performs USES+=fortran, thereby invoking ports machinery that sets the necessary linker flags. -- You are receiving this mail because: You are on the CC list for the bug.