Date: Mon, 20 Apr 2020 12:21:49 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r532202 - in head/science/afni: . files Message-ID: <202004201221.03KCLnMl031286@repo.freebsd.org>
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Author: jwb Date: Mon Apr 20 12:21:49 2020 New Revision: 532202 URL: https://svnweb.freebsd.org/changeset/ports/532202 Log: science/afni: Upgrade to 20.1.02 Added some common R-cran run dependencies Removed obsolete reinplace patches Improved do-install to better fit filesystem hierarchy Releasing maintainership as I no longer work with any AFNI users Reported by: portscout Added: head/science/afni/files/patch-machdep.c (contents, props changed) Modified: head/science/afni/Makefile head/science/afni/distinfo head/science/afni/files/patch-Makefile.INCLUDE head/science/afni/pkg-plist Modified: head/science/afni/Makefile ============================================================================== --- head/science/afni/Makefile Mon Apr 20 12:20:12 2020 (r532201) +++ head/science/afni/Makefile Mon Apr 20 12:21:49 2020 (r532202) @@ -2,19 +2,22 @@ PORTNAME= afni DISTVERSIONPREFIX= AFNI_ -DISTVERSION= 19.1.20 -PORTREVISION= 4 +DISTVERSION= 20.1.01 CATEGORIES= science biology graphics perl5 python -MAINTAINER= jwb@FreeBSD.org +MAINTAINER= ports@FreeBSD.org COMMENT= Advanced Functional Neuro Imaging LICENSE= GPLv2 BROKEN_sparc64= Does not compile: "undefined reference to '_mcount'" +CRAN_DEPENDS= R-cran-lme4>0:math/R-cran-lme4 \ + R-cran-snow>0:science/R-cran-snow \ + R-cran-psych>0:math/R-cran-psych BUILD_DEPENDS= gm4:devel/m4 \ - R:math/R + R:math/R \ + ${CRAN_DEPENDS} LIB_DEPENDS= libexpat.so:textproc/expat2 \ libf2c.so:lang/f2c \ libgsl.so:math/gsl \ @@ -22,18 +25,23 @@ LIB_DEPENDS= libexpat.so:textproc/expat2 \ libxml2.so:textproc/libxml2 \ libXm.so:x11-toolkits/open-motif \ libnetpbm.so:graphics/netpbm +# Remote execution of suma. Also needed for glxinfo. +LIB_PC_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/dri.pc:graphics/mesa-dri RUN_DEPENDS= endian:sysutils/endian \ mpeg_encode:multimedia/mpeg_encode \ qhull:math/qhull5 \ - R:math/R + R:math/R \ + ${CRAN_DEPENDS} -USES= compiler:openmp gettext gl gmake gnome iconv jpeg:run motif \ - perl5 python shebangfix tar:xz xorg +USES= compiler:openmp gettext gl gmake gnome iconv jpeg:run motif +USES+= perl5 python shebangfix tar:xz xorg USE_GNOME= glib20 USE_GITHUB= yes +USE_GL= gl SHEBANG_FILES= scripts_install/* \ - python_scripts/afni_python/*.py \ + python_scripts/afnipy/*.py \ + python_scripts/scripts/*.py \ jzosky/*.py \ jzosky/lib_RetroTS/*.py \ discoraj/ClusterExplorer/*.py \ @@ -70,16 +78,7 @@ CONFLICTS= im-[0-9]* \ open-usp-tukubai-[0-9]* X11R6_FILES= coxplot/Makefile \ - coxplot/Makefile.f2c \ - 3DEdge/src/Makefile \ - SUMA/SUMA_Makefile \ - edt_blur.c \ - suma_datasets.c \ - SUMA/SUMA_Load_Surface_Object.c \ - SUMA/SUMA_MiscFunc.c \ - SUMA/SUMA_ParseCommands.c \ - SUMA/GLUT/libglut/glut_event.c \ - SUMA/SUMA_Surface_IO.c + coxplot/Makefile.f2c post-extract: .for f in ${X11R6_FILES} @@ -91,36 +90,23 @@ post-extract: @${CP} ${FILESDIR}/Makefile ${WRKSRC} @${RM} ${WRKSRC}/3DEdge/src/Makefile.orig -# shebangfix misses /bin/python on 10.1 -# @${REINPLACE_CMD} -e "s|/bin/python|${PYTHON_CMD}|g" \ -# ${WRKSRC}/python_scripts/afni_python/lib_fat_Rfactor.py - pre-configure: @${REINPLACE_CMD} -e "s|-lglib|-lglib-2.0|g" \ ${WRKSRC}/SUMA/SUMA_Makefile @${REINPLACE_CMD} \ - -e 's|os\.path\.dirname(sys\.argv\[0\])|"${DATADIR}"|g' \ + -e 's|os\.path\.dirname(os\.path\.abspath(os\.path\.expanduser(sys\.argv\[0\])))|"${DATADIR}"|g' \ ${WRKSRC}/pkundu/meica.py - @${REINPLACE_CMD} \ - -e 's|g_info|afni_g_info|g' \ - ${WRKSRC}/rickr/Dimon.c \ - ${WRKSRC}/rickr/Dimon1.c \ - ${WRKSRC}/afni_history_rickr.c \ - ${WRKSRC}/mri_dicom_stuff.c \ - ${WRKSRC}/mri_process_siemens.c \ - ${WRKSRC}/mri_read_dicom.c \ - ${WRKSRC}/to3d.c \ - ${WRKSRC}/mri_dicom_stuff.h do-install: # AFNI install just dumps everything into one flat directory - # Preserve original install dir and make a sacrificial temp copy + # ${WRKSRC}/BSD == ${INSTALL_WRKSRC}. + # Preserve ${INSTALL_WRKSRC} and make a sacrificial temp copy # to be pruned and rearranged for easy staging @${RM} -r ${INSTALL_TMP} @${CP} -R ${INSTALL_WRKSRC} ${INSTALL_TMP} # Clean up and organize files into ${PRESTAGE}, destroying - # temp copy in the process + # ${INSTALL_TMP} in the process @${RM} -rf ${PRESTAGE} @${MKDIR} ${PRESTAGE}/bin \ ${PRESTAGE}/scripts \ @@ -128,12 +114,12 @@ do-install: ${PRESTAGE}/include \ ${PRESTAGE}/trash \ ${PRESTAGE}/doc \ - ${PRESTAGE}/share + ${PRESTAGE}/share \ + ${PRESTAGE}/pylib @${RM} ${INSTALL_TMP}/libf2c.a @${MV} ${INSTALL_TMP}/meica.libs \ ${INSTALL_TMP}/shiny \ ${INSTALL_TMP}/lib_RetroTS \ - ${INSTALL_TMP}/afniInterfaceRT \ ${INSTALL_TMP}/funstuff \ ${INSTALL_TMP}/AFNI.*rc \ ${INSTALL_TMP}/afnigui* \ @@ -142,6 +128,7 @@ do-install: ${INSTALL_TMP}/*.so \ ${PRESTAGE}/lib @${MV} ${INSTALL_TMP}/*.h ${PRESTAGE}/include + @${MV} ${INSTALL_TMP}/afnipy ${INSTALL_TMP}/afniRTI ${PRESTAGE}/pylib @${CP} ${WRKDIR}/afni-AFNI_${PORTVERSION}/doc/README/* ${PRESTAGE}/doc @for binary in `${FILE} ${INSTALL_TMP}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \ ${MV} $${binary} ${PRESTAGE}/bin ; \ @@ -157,6 +144,8 @@ do-install: ${STAGEDIR}${PREFIX}/etc/mri ${INSTALL_PROGRAM} ${PRESTAGE}/bin/* ${STAGEDIR}${PREFIX}/bin ${INSTALL_SCRIPT} ${PRESTAGE}/scripts/* ${STAGEDIR}${PREFIX}/bin + (cd ${PRESTAGE}/pylib && \ + ${COPYTREE_SHARE} . ${STAGEDIR}${PYTHON_SITELIBDIR}) ${INSTALL_DATA} ${PRESTAGE}/lib/* ${STAGEDIR}${PREFIX}/lib/afni ${INSTALL_DATA} ${PRESTAGE}/include/* ${STAGEDIR}${PREFIX}/include/afni (cd ${PRESTAGE}/share && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR}) Modified: head/science/afni/distinfo ============================================================================== --- head/science/afni/distinfo Mon Apr 20 12:20:12 2020 (r532201) +++ head/science/afni/distinfo Mon Apr 20 12:21:49 2020 (r532202) @@ -1,3 +1,3 @@ -TIMESTAMP = 1560861068 -SHA256 (afni-afni-AFNI_19.1.20_GH0.tar.gz) = d9d63e3c8f4d38b28c4ceb71ee5537e66f400a6f2b2e0443fa58f2cf7a112007 -SIZE (afni-afni-AFNI_19.1.20_GH0.tar.gz) = 38939294 +TIMESTAMP = 1587212753 +SHA256 (afni-afni-AFNI_20.1.01_GH0.tar.gz) = 8512f1d1d9c2a5c8224d222577249b1bfa280adb4f647c96f08e933f5f1b1a0c +SIZE (afni-afni-AFNI_20.1.01_GH0.tar.gz) = 43164312 Modified: head/science/afni/files/patch-Makefile.INCLUDE ============================================================================== --- head/science/afni/files/patch-Makefile.INCLUDE Mon Apr 20 12:20:12 2020 (r532201) +++ head/science/afni/files/patch-Makefile.INCLUDE Mon Apr 20 12:21:49 2020 (r532202) @@ -1,6 +1,6 @@ ---- Makefile.INCLUDE.orig 2019-05-23 14:10:15 UTC +--- Makefile.INCLUDE.orig 2020-04-15 00:56:29 UTC +++ Makefile.INCLUDE -@@ -67,7 +67,7 @@ MISC = AFNI_atlas_spaces.niml AFNI.Xdefaults AFNI.a +@@ -92,7 +92,7 @@ MISC = AFNI_atlas_spaces.niml AFNI.Xdefaults AFNI.a ## AFNI package, but included because they are useful. Some of ## them are Open Source programs, not from the AFNI group at all. @@ -9,7 +9,7 @@ # mpegtoppm in above list -@@ -80,7 +80,7 @@ EXTRAS = cjpeg djpeg whirlgif mpeg_encode myget Xpha +@@ -105,7 +105,7 @@ EXTRAS = cjpeg djpeg whirlgif mpeg_encode myget Xpha PROGS_1 = afni to3d from3d abut 3dclust nsize 3dinfo 3dproject 3dmerge count \ sfim tfim ftosh 3dttest 3ddup imrotate imreg imstat 3dnvals \ fim2 imand FD2 sqwave immask imdump imaver 3dhistog 3dfim 3daxialize \ @@ -18,7 +18,7 @@ waver 3dnewid 3dcalc ccalc imcalc 1dmatcalc 3drefit 3dbucket \ 3dNLfim 3dTSgen AlphaSim 3dFWHM plugout_tt 3dnoise plugout_ijk \ 3dMannWhitney 3dWilcoxon 3dKruskalWallis 3dFriedman 3dRegAna \ -@@ -93,7 +93,7 @@ PROGS_2 = 3dTshift 3dDetrend 1dfft 1dcat 3drename 1dn +@@ -118,7 +118,7 @@ PROGS_2 = 3dTshift 3dDetrend 1dfft 1dcat 3drename 1dn 3dWavelets 3dfim+ imcutup imcat 3dWinsor 3dZeropad 3dTagalign \ 3dMean 3dAttribute cat_matvec 3dOverlap 3dClipLevel 3dZregrid \ 3dEntropy 3ddelay ent16 3dRowFillin 1dgrayplot 3dToutcount 1dsum \ @@ -27,7 +27,7 @@ 3dTcorrelate 3dAnatNudge 3dcopy Vecwarp 3dMINCtoAFNI 3dCM fdrval \ 3dAFNItoANALYZE siemens_vision ge_header mayo_analyze 3dAFNItoNIFTI \ 3dAutoTcorrelate 3dFDR rtfeedme 3dAutomask 3dAFNItoMINC 3dBrickStat \ -@@ -115,7 +115,7 @@ PROGS_3 = 3dDeconvolve_f 3dAnhist 3dAFNIto3D 3dUnifor +@@ -141,7 +141,7 @@ PROGS_3 = 3dDeconvolve_f 3dAnhist 3dAFNIto3D 3dUnifor PROGS_4 = 3dBlurInMask 3dRank 3dFFT 1dgenARMA11 3dPeriodogram 1dAstrip \ 3dLocalPV 3dBandpass 3dSetupGroupInCorr 3dGroupInCorr 3dTcorr1D \ 3dClustSim 3dRetinoPhase 3dMaskToASCII 3dttest++ 3dDTtoDWI \ @@ -36,7 +36,7 @@ 1dCorrelate 3dCountSpikes 3dNwarpCalc dicom_hinfo apsearch 1dBport \ 3dNormalityTest 3dmask_tool FIRdesign help_format 2perm 3dClustCount \ column_cat 3dUnifize 3dNwarpCat 3dQwarp 3dLocalHistog 3dNwarpAdjust \ -@@ -141,7 +141,7 @@ PROGRAMS = $(PROGS_1) $(PROGS_2) $(PROGS_3) $(PROGS_4) +@@ -167,7 +167,7 @@ PROGRAMS = $(PROGS_1) $(PROGS_2) $(PROGS_3) $(PROGS_4) PROGRAMS_NOPLUG = afni to3d from3d abut 3dclust nsize 3dinfo 3dproject 3dmerge \ sfim tfim ftosh 3dttest 3ddup imrotate imreg imstat 3dnoise count \ fim2 imand FD2 sqwave immask imdump imaver 3dhistog 3dfim imupsam \ @@ -45,7 +45,7 @@ waver 3dnewid 3dcalc ccalc imcalc 2dImReg 3dmaskave adwarp fdrval \ 3dMannWhitney 3dWilcoxon 3dKruskalWallis 3dFriedman 3dRegAna \ imstack byteorder 3dDeconvolve 3dTcat 3drotate 3dvolreg 1dplot \ -@@ -184,7 +184,7 @@ PROGRAMS_NOPLUG = afni to3d from3d abut 3dclust nsize +@@ -210,7 +210,7 @@ PROGRAMS_NOPLUG = afni to3d from3d abut 3dclust nsize PROGRAMS_EXE = afni.exe to3d from3d abut 3dclust nsize 3dinfo 3dproject 3dmerge \ sfim tfim ftosh 3dttest 3ddup imrotate imreg imstat 3dnvals count \ fim2 imand FD2 sqwave immask imdump imaver 3dhistog 3dfim 3dGetrow \ @@ -54,12 +54,10 @@ waver 3dnewid 3dcalc ccalc imcalc 1dmatcalc 3drefit 3dbucket \ 3dAFNItoNIML AlphaSim 3dFWHM plugout_tt 3dnoise plugout_ijk \ 3dMannWhitney 3dWilcoxon 3dKruskalWallis 3dFriedman 3dRegAna \ -@@ -3927,9 +3927,10 @@ toyR: toyR.c AFNI_embeddedRCall.o - #### - R_io.so:R_io.c $(LIBMRI_OBJ) +@@ -4093,7 +4093,10 @@ R_Makevars_mod_linux: + + R_io.so: R_io.c $(LIBMRI_OBJ) $(R_MAKEVARS_DEP) ( if which R >/dev/null ; then \ -- echo PKG_CPPFLAGS = $(INFLAGS) > Makevars ;\ -- echo PKG_LIBS = $(LFLAGS) $(LLIBS) $(RLIB_CONVERT) >> Makevars ;\ - R CMD SHLIB -o R_io.so R_io.c ; \ + echo PKG_CPPFLAGS = $(INFLAGS) -I${LOCALBASE}/lib/R/include > Makevars ;\ + echo PKG_LIBS = $(LFLAGS) $(LLIBS) $(RLIB_CONVERT) -L${LOCALBASE}/lib/R/lib >> Makevars ;\ Added: head/science/afni/files/patch-machdep.c ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/afni/files/patch-machdep.c Mon Apr 20 12:21:49 2020 (r532202) @@ -0,0 +1,15 @@ +--- machdep.c.orig 2020-04-18 13:02:47 UTC ++++ machdep.c +@@ -2,7 +2,11 @@ + #include "mrilib.h" + + #ifndef DARWIN +-# include <malloc.h> ++# ifdef __FreeBSD__ ++# include <stdlib.h> ++# else ++# include <malloc.h> ++# endif + #endif + + #include <unistd.h> Modified: head/science/afni/pkg-plist ============================================================================== --- head/science/afni/pkg-plist Mon Apr 20 12:20:12 2020 (r532201) +++ head/science/afni/pkg-plist Mon Apr 20 12:21:49 2020 (r532202) @@ -33,6 +33,7 @@ bin/1dsvd bin/1dtranspose bin/24swap bin/2dImReg +bin/2dcat bin/2perm bin/2swap bin/3dABoverlap @@ -68,6 +69,7 @@ bin/3dClipLevel bin/3dClustCount bin/3dClustSim bin/3dClusterize +bin/3dCompareAffine bin/3dConformist bin/3dConvolve bin/3dCountSpikes @@ -104,8 +106,11 @@ bin/3dGrayplot bin/3dGroupInCorr bin/3dHist bin/3dICA.R +bin/3dICC bin/3dICC.R bin/3dICC_REML.R +bin/3dISC +bin/3dISC.R bin/3dIntracranial bin/3dInvFMRI bin/3dKS.R @@ -113,6 +118,8 @@ bin/3dKruskalWallis bin/3dLFCD bin/3dLME bin/3dLME.R +bin/3dLMEr +bin/3dLMEr.R bin/3dLRflip bin/3dLSS bin/3dLocalACF @@ -289,7 +296,6 @@ bin/@DO.examples bin/@DTI_studio_reposition bin/@DeblankFileNames bin/@DiceMetric -bin/@DoPerRoi.py bin/@DriveAfni bin/@DriveSuma bin/@ElectroGrid @@ -316,6 +322,7 @@ bin/@Install_FATCAT_DEMO bin/@Install_FATCAT_DEMO2 bin/@Install_FATMVM_DEMO bin/@Install_InstaCorr_Demo +bin/@Install_MACAQUE_DEMO bin/@Install_MEICA_Demo bin/@Install_NIH_Marmoset bin/@Install_RSFMRI_Motion_Group_Demo @@ -354,9 +361,11 @@ bin/@VolCenter bin/@afni.run.me bin/@afni_R_package_install bin/@afni_refacer_make_master +bin/@afni_refacer_make_master_addendum bin/@afni_refacer_make_onebigA12 bin/@afni_refacer_run bin/@align_partial_oblique +bin/@animal_warper bin/@auto_align bin/@auto_tlrc bin/@build_afni_Xlib @@ -370,14 +379,12 @@ bin/@diff.files bin/@diff.tree bin/@djunct_4d_imager bin/@djunct_4d_slices_to_3d_vol -bin/@djunct_calc_mont_dims.py -bin/@djunct_combine_str.py +bin/@djunct_anonymize bin/@djunct_dwi_selector.tcsh bin/@djunct_edgy_align_check -bin/@djunct_is_label.py +bin/@djunct_glue_imgs_vert bin/@djunct_json_value.py bin/@djunct_montage_coordinator -bin/@djunct_select_str.py bin/@djunct_slice_space bin/@djunct_vol_3slice_select bin/@escape- @@ -405,6 +412,7 @@ bin/@simulate_motion bin/@snapshot_volreg bin/@snapshot_volreg3 bin/@statauxcode +bin/@suma_acknowledge bin/@suma_reprefixize_spec bin/@surf_to_vol_spackle bin/@thickness_master @@ -422,6 +430,7 @@ bin/AnalyzeTrace bin/BayesianGroupAna.R bin/BayesianGroupAna.py bin/BrainSkin +bin/CMakeLists.txt bin/ClustExp_HistTable.py bin/ClustExp_StatParse.py bin/CompareSurfaces @@ -432,6 +441,7 @@ bin/CreateIcosahedron bin/DTIStudioFibertoSegments bin/Dimon bin/Dimon1 +bin/DoPerRoi.py bin/DriveSuma bin/ExamineXmat bin/ExamineXmat.R @@ -482,31 +492,33 @@ bin/Vecwarp bin/Xphace bin/abids_json_info.py bin/abids_json_tool.py -bin/abids_lib.py bin/abids_tool.py bin/abut +bin/adjunct_calc_mont_dims.py +bin/adjunct_combine_str.py +bin/adjunct_is_label.py +bin/adjunct_make_script_and_rst.py +bin/adjunct_select_str.py bin/adwarp bin/afni -bin/afni_base.py bin/afni_check_omp bin/afni_fs_aparc+aseg_2000.txt bin/afni_fs_aparc+aseg_2009.txt bin/afni_history bin/afni_open bin/afni_proc.py +bin/afni_python_wrapper.py bin/afni_restproc.py bin/afni_run_R +bin/afni_seeds_per_space.txt bin/afni_skeleton.py bin/afni_system_check.py -bin/afni_util.py bin/afni_vcheck -bin/afni_xmat.py bin/aiv bin/align_epi_anat.py bin/apqc_make_html.py bin/apqc_make_tcsh.py bin/apsearch -bin/ask_me.py bin/auto_warp.py bin/byteorder bin/cat_matvec @@ -514,7 +526,6 @@ bin/ccalc bin/cifti_tool bin/column_cat bin/count -bin/db_mod.py bin/dcm2niix_afni bin/demo.fixed.niml.do bin/demo.mobile.niml.do @@ -522,6 +533,7 @@ bin/demoExpt.py bin/dicom_hdr bin/dicom_hinfo bin/dicom_to_raw +bin/dsetstat2p bin/eg_main_chrono.py bin/ent16 bin/fat_lat_csv.py @@ -559,11 +571,6 @@ bin/get_afni_model_PRF bin/get_afni_model_PRF_6 bin/get_afni_model_PRF_6_BAD bin/gifti_tool -bin/gui_uber_align_test.py -bin/gui_uber_skel.py -bin/gui_uber_subj.py -bin/gui_uber_ttest.py -bin/gui_xmat.py bin/help_format bin/im2niml bin/images_equal @@ -580,35 +587,6 @@ bin/imstack bin/imstat bin/imupsam bin/inspec -bin/lib_RR_plot.py -bin/lib_afni1D.py -bin/lib_apqc_html.py -bin/lib_apqc_html_css.py -bin/lib_apqc_html_helps.py -bin/lib_apqc_io.py -bin/lib_apqc_tcsh.py -bin/lib_decay_timing.py -bin/lib_dti_sundry.py -bin/lib_fat_Rfactor.py -bin/lib_fat_funcs.py -bin/lib_fat_plot_sel.py -bin/lib_matplot.py -bin/lib_plot_1D.py -bin/lib_qt_gui.py -bin/lib_rand_timing.py -bin/lib_realtime.py -bin/lib_ss_review.py -bin/lib_subjects.py -bin/lib_surf_clustsim.py -bin/lib_system_check.py -bin/lib_textdata.py -bin/lib_timing.py -bin/lib_uber_align.py -bin/lib_uber_skel.py -bin/lib_uber_subject.py -bin/lib_uber_ttest.py -bin/lib_vars_object.py -bin/lib_wx.py bin/lpc_align.py bin/make_pq_script.py bin/make_random_timing.py @@ -616,7 +594,6 @@ bin/make_stim_times.py bin/map_TrackID bin/mayo_analyze bin/meica.py -bin/module_test_lib.py bin/mritopgm bin/mycat bin/myget @@ -628,7 +605,6 @@ bin/nifti_tool bin/niml_feedme bin/niprobe bin/nsize -bin/option_list.py bin/p2dsetstat bin/parse_fs_lt_log.py bin/plugout_drive @@ -668,7 +644,6 @@ bin/uber_proc.py bin/uber_skel.py bin/uber_subject.py bin/uber_ttest.py -bin/ui_xmat.py bin/unWarpEPI.py bin/uniq_images bin/waver @@ -807,19 +782,74 @@ lib/afni/plug_vol2surf.so lib/afni/plug_volreg.so lib/afni/plug_wavelets.so lib/afni/plug_zeropad.so +%%PYTHON_SITELIBDIR%%/afniRTI/__init__.py +%%PYTHON_SITELIBDIR%%/afniRTI/experiment.py +%%PYTHON_SITELIBDIR%%/afniRTI/realtime.py +%%PYTHON_SITELIBDIR%%/afniRTI/receiver.py +%%PYTHON_SITELIBDIR%%/afnipy/__init__.py +%%PYTHON_SITELIBDIR%%/afnipy/abids_lib.py +%%PYTHON_SITELIBDIR%%/afnipy/afni_base.py +%%PYTHON_SITELIBDIR%%/afnipy/afni_util.py +%%PYTHON_SITELIBDIR%%/afnipy/afni_xmat.py +%%PYTHON_SITELIBDIR%%/afnipy/ask_me.py +%%PYTHON_SITELIBDIR%%/afnipy/check_dset_for_fs.py +%%PYTHON_SITELIBDIR%%/afnipy/db_mod.py +%%PYTHON_SITELIBDIR%%/afnipy/epi_b0_correct.py +%%PYTHON_SITELIBDIR%%/afnipy/gui_uber_align_test.py +%%PYTHON_SITELIBDIR%%/afnipy/gui_uber_proc.py +%%PYTHON_SITELIBDIR%%/afnipy/gui_uber_skel.py +%%PYTHON_SITELIBDIR%%/afnipy/gui_uber_subj.py +%%PYTHON_SITELIBDIR%%/afnipy/gui_uber_ttest.py +%%PYTHON_SITELIBDIR%%/afnipy/gui_xmat.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_RR_plot.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_afni1D.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_ap_examples.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_apqc_html.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_apqc_html_css.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_apqc_io.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_apqc_tcsh.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_b0_corr.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_decay_timing.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_dti_sundry.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_fat_Rfactor.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_fat_funcs.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_fat_plot_sel.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_fs.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_gershgorin.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_info_dict.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_matplot.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_msar.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_plot_1D.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_qt_gui.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_rand_timing.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_realtime.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_ss_review.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_subjects.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_surf_clustsim.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_system_check.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_textdata.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_timing.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_uber_align.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_uber_proc.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_uber_skel.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_uber_subject.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_uber_ttest.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_vars_object.py +%%PYTHON_SITELIBDIR%%/afnipy/lib_wx.py +%%PYTHON_SITELIBDIR%%/afnipy/module_test_lib.py +%%PYTHON_SITELIBDIR%%/afnipy/niml_parsing.py +%%PYTHON_SITELIBDIR%%/afnipy/option_list.py +%%PYTHON_SITELIBDIR%%/afnipy/ui_xmat.py %%DATADIR%%/AFNI.afnirc %%DATADIR%%/AFNI.sumarc -%%DATADIR%%/afniInterfaceRT/__init__.py -%%DATADIR%%/afniInterfaceRT/experiment.py -%%DATADIR%%/afniInterfaceRT/realtime.py -%%DATADIR%%/afniInterfaceRT/receiver.py -%%DATADIR%%/afniInterfaceRT/testOS.py %%DATADIR%%/afnigui.html %%DATADIR%%/afnigui_cursor1030.jpg %%DATADIR%%/afnigui_cursor1100.jpg %%DATADIR%%/afnigui_logo.jpg +%%DATADIR%%/funstuff/afnimusic.au %%DATADIR%%/funstuff/face_15k_jjlr.jpg %%DATADIR%%/funstuff/face_7Tesla.jpg +%%DATADIR%%/funstuff/face_ABtwins.jpg %%DATADIR%%/funstuff/face_AuroraRamos.jpg %%DATADIR%%/funstuff/face_CassieK.jpg %%DATADIR%%/funstuff/face_Eddie.jpg @@ -1017,6 +1047,7 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/face_isaac.jpg %%DATADIR%%/funstuff/face_jaehun.jpg %%DATADIR%%/funstuff/face_jaehun2.jpg +%%DATADIR%%/funstuff/face_jane_ad.jpg %%DATADIR%%/funstuff/face_javier_gonzalez-castillo.jpg %%DATADIR%%/funstuff/face_jbacon.jpg %%DATADIR%%/funstuff/face_jbinder.jpg @@ -1149,6 +1180,7 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/face_patbedard.jpg %%DATADIR%%/funstuff/face_patziad.jpg %%DATADIR%%/funstuff/face_paul_taylor.1.jpg +%%DATADIR%%/funstuff/face_paul_taylor.2.jpg %%DATADIR%%/funstuff/face_paul_taylor.jpg %%DATADIR%%/funstuff/face_pba5.jpg %%DATADIR%%/funstuff/face_pbdet.jpg @@ -1164,6 +1196,7 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/face_phoebechan.jpg %%DATADIR%%/funstuff/face_pilyoung_kim.jpg %%DATADIR%%/funstuff/face_pkochunov.jpg +%%DATADIR%%/funstuff/face_plaid.jpg %%DATADIR%%/funstuff/face_potomac.jpg %%DATADIR%%/funstuff/face_prantik.jpg %%DATADIR%%/funstuff/face_prowser.jpg @@ -1231,6 +1264,8 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/face_rwcoxT.jpg %%DATADIR%%/funstuff/face_rwcoxU.jpg %%DATADIR%%/funstuff/face_rwcoxV.jpg +%%DATADIR%%/funstuff/face_rwcoxW.jpg +%%DATADIR%%/funstuff/face_rwcoxX.jpg %%DATADIR%%/funstuff/face_rwcox_di_milano.jpg %%DATADIR%%/funstuff/face_s_torrisi.jpg %%DATADIR%%/funstuff/face_saccanch.jpg @@ -1260,6 +1295,7 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/face_ssaad.jpg %%DATADIR%%/funstuff/face_ssmall.jpg %%DATADIR%%/funstuff/face_steverao.jpg +%%DATADIR%%/funstuff/face_stovetop.jpg %%DATADIR%%/funstuff/face_stu_white.jpg %%DATADIR%%/funstuff/face_sudre_gustavo.jpg %%DATADIR%%/funstuff/face_sule_tinaz.jpg @@ -1300,6 +1336,7 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/face_yaqiong_xiao.jpg %%DATADIR%%/funstuff/face_yarik_halchenko.jpg %%DATADIR%%/funstuff/face_yingyingwang.jpg +%%DATADIR%%/funstuff/face_yoichi.jpg %%DATADIR%%/funstuff/face_zman.jpg %%DATADIR%%/funstuff/face_zsaad.jpg %%DATADIR%%/funstuff/face_zsaad2.jpg @@ -1328,12 +1365,57 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/poem_ww2.txt %%DATADIR%%/funstuff/splash_12Apostles.jpg %%DATADIR%%/funstuff/splash_3monkeys.jpg +%%DATADIR%%/funstuff/splash_AFNIbasque.jpg +%%DATADIR%%/funstuff/splash_Airplane.Wing.BG.jpg +%%DATADIR%%/funstuff/splash_Bldg35A_BG.jpg %%DATADIR%%/funstuff/splash_Bpark.jpg +%%DATADIR%%/funstuff/splash_CanalA_BG.jpg +%%DATADIR%%/funstuff/splash_CanalB_BG.jpg +%%DATADIR%%/funstuff/splash_Canal_BG.jpg +%%DATADIR%%/funstuff/splash_DCdome.jpg +%%DATADIR%%/funstuff/splash_Escalator_BG.jpg %%DATADIR%%/funstuff/splash_Feb2016.jpg +%%DATADIR%%/funstuff/splash_GFalls.jpg +%%DATADIR%%/funstuff/splash_HKferris_BG.jpg %%DATADIR%%/funstuff/splash_KUMC.jpg +%%DATADIR%%/funstuff/splash_LeaveX3_BG.jpg +%%DATADIR%%/funstuff/splash_Lincoln.BG.jpg +%%DATADIR%%/funstuff/splash_Lincoln.Mem.Sunset.BG.jpg +%%DATADIR%%/funstuff/splash_Lincoln.Mem.Sunset2.BG.jpg +%%DATADIR%%/funstuff/splash_Lucca.Cafe2.BG.jpg +%%DATADIR%%/funstuff/splash_Lucca.Dinner.VBG.jpg +%%DATADIR%%/funstuff/splash_Monastery_BG.jpg +%%DATADIR%%/funstuff/splash_NIH.B1.frontB.jpg +%%DATADIR%%/funstuff/splash_NIH.B10.southdoors.BG.jpg +%%DATADIR%%/funstuff/splash_NIH.B33.cut.jpg +%%DATADIR%%/funstuff/splash_NIH.B49_trees_BG.jpg +%%DATADIR%%/funstuff/splash_NIH.Natcher.sideBG.jpg +%%DATADIR%%/funstuff/splash_NIHB40.jpg +%%DATADIR%%/funstuff/splash_NIH_Bld50_Weird_VG.jpg +%%DATADIR%%/funstuff/splash_NIH_Bldg50A_Weird_VG.jpg +%%DATADIR%%/funstuff/splash_NIH_fenceB_VG.jpg +%%DATADIR%%/funstuff/splash_NIH_fenceZ.jpg +%%DATADIR%%/funstuff/splash_NIHwalk_VG.jpg %%DATADIR%%/funstuff/splash_NMcloud.jpg +%%DATADIR%%/funstuff/splash_Patan_VGGc.jpg +%%DATADIR%%/funstuff/splash_Pisa_BG.jpg +%%DATADIR%%/funstuff/splash_Potomac1_VG.jpg +%%DATADIR%%/funstuff/splash_Roma.Legs.BG.jpg +%%DATADIR%%/funstuff/splash_Singapore-MBSday.jpg +%%DATADIR%%/funstuff/splash_Singapore-MBSnight.jpg +%%DATADIR%%/funstuff/splash_Singapore-NUS.jpg +%%DATADIR%%/funstuff/splash_Singapore-Skyline.jpg +%%DATADIR%%/funstuff/splash_SmithFountain_VG.jpg +%%DATADIR%%/funstuff/splash_Strollers_VG.jpg +%%DATADIR%%/funstuff/splash_Sunset_VG.jpg +%%DATADIR%%/funstuff/splash_Traffic_VG.jpg +%%DATADIR%%/funstuff/splash_UWash.kayakBG.jpg %%DATADIR%%/funstuff/splash_Utah_Dog.jpg %%DATADIR%%/funstuff/splash_Utah_Tree.jpg +%%DATADIR%%/funstuff/splash_Wave_VG.jpg +%%DATADIR%%/funstuff/splash_Window_VG.jpg +%%DATADIR%%/funstuff/splash_aboot_nih_nov_2019.jpg +%%DATADIR%%/funstuff/splash_aboot_nih_nov_2019b.jpg %%DATADIR%%/funstuff/splash_afnicake20.jpg %%DATADIR%%/funstuff/splash_afnicalling.jpg %%DATADIR%%/funstuff/splash_afniegypt.jpg @@ -1344,6 +1426,7 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/splash_afnisun2.jpg %%DATADIR%%/funstuff/splash_afnitree.jpg %%DATADIR%%/funstuff/splash_airplane.jpg +%%DATADIR%%/funstuff/splash_airplane_blue.jpg %%DATADIR%%/funstuff/splash_allfaces.jpg %%DATADIR%%/funstuff/splash_angkorwat.jpg %%DATADIR%%/funstuff/splash_arno.jpg @@ -1355,6 +1438,7 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/splash_barcelona.jpg %%DATADIR%%/funstuff/splash_bawiti.jpg %%DATADIR%%/funstuff/splash_beijingnormal.jpg +%%DATADIR%%/funstuff/splash_bethesda_storm.jpg %%DATADIR%%/funstuff/splash_betshean.jpg %%DATADIR%%/funstuff/splash_birds.jpg %%DATADIR%%/funstuff/splash_blackdesert.jpg @@ -1435,6 +1519,7 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/splash_karski.jpg %%DATADIR%%/funstuff/splash_kebb.jpg %%DATADIR%%/funstuff/splash_kissing.jpg +%%DATADIR%%/funstuff/splash_korea2019.jpg %%DATADIR%%/funstuff/splash_lasvegas.jpg %%DATADIR%%/funstuff/splash_laworder.jpg %%DATADIR%%/funstuff/splash_leaves2018.jpg @@ -1456,6 +1541,7 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/splash_monastery.jpg %%DATADIR%%/funstuff/splash_monks.jpg %%DATADIR%%/funstuff/splash_monumentvalley.jpg +%%DATADIR%%/funstuff/splash_moria.jpg %%DATADIR%%/funstuff/splash_mteverest.jpg %%DATADIR%%/funstuff/splash_mtyale.jpg %%DATADIR%%/funstuff/splash_nashville.jpg @@ -1463,22 +1549,29 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/splash_nepalbridge.jpg %%DATADIR%%/funstuff/splash_nepalmani.jpg %%DATADIR%%/funstuff/splash_nepalphortse.jpg +%%DATADIR%%/funstuff/splash_nih_angel.jpg +%%DATADIR%%/funstuff/splash_nih_towers.jpg %%DATADIR%%/funstuff/splash_nihb31.jpg %%DATADIR%%/funstuff/splash_nihb50.jpg %%DATADIR%%/funstuff/splash_nihfall2014.jpg %%DATADIR%%/funstuff/splash_nihfence.jpg %%DATADIR%%/funstuff/splash_nihwalk.jpg +%%DATADIR%%/funstuff/splash_nimhans2020dti.jpg +%%DATADIR%%/funstuff/splash_njit_2019.jpg %%DATADIR%%/funstuff/splash_okazaki_A.jpg +%%DATADIR%%/funstuff/splash_onprc_2019.jpg %%DATADIR%%/funstuff/splash_palenque.jpg %%DATADIR%%/funstuff/splash_palk.jpg %%DATADIR%%/funstuff/splash_pba5.jpg %%DATADIR%%/funstuff/splash_petra.jpg %%DATADIR%%/funstuff/splash_petratreasury.jpg +%%DATADIR%%/funstuff/splash_pgimer2020dti.jpg %%DATADIR%%/funstuff/splash_pinkrock.jpg %%DATADIR%%/funstuff/splash_pisa.jpg %%DATADIR%%/funstuff/splash_pisa2010.jpg %%DATADIR%%/funstuff/splash_pot.jpg %%DATADIR%%/funstuff/splash_potomac.jpg +%%DATADIR%%/funstuff/splash_potomac2.jpg %%DATADIR%%/funstuff/splash_prayerflags.jpg %%DATADIR%%/funstuff/splash_qufu.jpg %%DATADIR%%/funstuff/splash_rapture.jpg @@ -1492,11 +1585,13 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/splash_sdyb.jpg %%DATADIR%%/funstuff/splash_seoul.jpg %%DATADIR%%/funstuff/splash_seoul2011.jpg +%%DATADIR%%/funstuff/splash_sgfountain.jpg %%DATADIR%%/funstuff/splash_shadowbob.jpg %%DATADIR%%/funstuff/splash_sharksign.jpg %%DATADIR%%/funstuff/splash_shenzhen.jpg %%DATADIR%%/funstuff/splash_sixpoles.jpg %%DATADIR%%/funstuff/splash_skullarch.jpg +%%DATADIR%%/funstuff/splash_sky2_VG.jpg %%DATADIR%%/funstuff/splash_snowzilla.jpg %%DATADIR%%/funstuff/splash_soren.jpg %%DATADIR%%/funstuff/splash_squidding.jpg @@ -1518,9 +1613,11 @@ lib/afni/plug_zeropad.so %%DATADIR%%/funstuff/splash_thewave3.jpg %%DATADIR%%/funstuff/splash_titicaca.jpg %%DATADIR%%/funstuff/splash_todaiji.jpg +%%DATADIR%%/funstuff/splash_trees5_VG.jpg %%DATADIR%%/funstuff/splash_troll.jpg %%DATADIR%%/funstuff/splash_tuebingen.jpg %%DATADIR%%/funstuff/splash_tulips.jpg +%%DATADIR%%/funstuff/splash_tulips_VG.jpg %%DATADIR%%/funstuff/splash_tulsa2011.jpg %%DATADIR%%/funstuff/splash_tulsa2016.jpg %%DATADIR%%/funstuff/splash_twinkies.jpg @@ -1834,6 +1931,7 @@ lib/afni/plug_zeropad.so %%DATADIR%%/shiny/FATCAT_matplot_shiny/stat_methods.csv %%DATADIR%%/shiny/FATCAT_matplot_shiny/ui.R %%DATADIR%%/shiny/misc/OmicCircos_pkg_install.R +%%PORTDOCS%%%%DOCSDIR%%/CMakeLists.txt %%PORTDOCS%%%%DOCSDIR%%/README %%PORTDOCS%%%%DOCSDIR%%/README.Ifile %%PORTDOCS%%%%DOCSDIR%%/README.afnigui
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