From owner-svn-ports-all@FreeBSD.ORG Mon Oct 6 20:16:37 2014 Return-Path: Delivered-To: svn-ports-all@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 1D5667B1; Mon, 6 Oct 2014 20:16:37 +0000 (UTC) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 07F9B26C; Mon, 6 Oct 2014 20:16:37 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.9/8.14.9) with ESMTP id s96KGasV084856; Mon, 6 Oct 2014 20:16:36 GMT (envelope-from marino@FreeBSD.org) Received: (from marino@localhost) by svn.freebsd.org (8.14.9/8.14.9/Submit) id s96KGZP8084850; Mon, 6 Oct 2014 20:16:35 GMT (envelope-from marino@FreeBSD.org) Message-Id: <201410062016.s96KGZP8084850@svn.freebsd.org> X-Authentication-Warning: svn.freebsd.org: marino set sender to marino@FreeBSD.org using -f From: John Marino Date: Mon, 6 Oct 2014 20:16:35 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r370220 - in head/biology: . ncbi-blast X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.18-1 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 06 Oct 2014 20:16:37 -0000 Author: marino Date: Mon Oct 6 20:16:35 2014 New Revision: 370220 URL: https://svnweb.freebsd.org/changeset/ports/370220 QAT: https://qat.redports.org/buildarchive/r370220/ Log: Add new port biology/ncbi-blast PR: 190854 Submitted by: Jason Bacon The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families. Added: head/biology/ncbi-blast/ head/biology/ncbi-blast/Makefile (contents, props changed) head/biology/ncbi-blast/distinfo (contents, props changed) head/biology/ncbi-blast/pkg-descr (contents, props changed) head/biology/ncbi-blast/pkg-plist (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Mon Oct 6 20:16:21 2014 (r370219) +++ head/biology/Makefile Mon Oct 6 20:16:35 2014 (r370220) @@ -40,6 +40,7 @@ SUBDIR += mrbayes SUBDIR += mummer SUBDIR += muscle + SUBDIR += ncbi-blast SUBDIR += ncbi-toolkit SUBDIR += njplot SUBDIR += ortep3 Added: head/biology/ncbi-blast/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/ncbi-blast/Makefile Mon Oct 6 20:16:35 2014 (r370220) @@ -0,0 +1,56 @@ +# Created by: Jason Bacon +# $FreeBSD$ + +PORTNAME= blast +PORTVERSION= 2.2.30 +CATEGORIES= biology +MASTER_SITES= http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ +PKGNAMEPREFIX= ncbi +DISTNAME= ncbi-blast-${PORTVERSION}+-src + +MAINTAINER= jwbacon@tds.net +COMMENT= NCBI implementation of Basic Local Alignment Search Tool + +LICENSE= Public_domain +LICENSE_NAME= Public Domain +LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE +LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept + +LIB_DEPENDS= libpcre.so:${PORTSDIR}/devel/pcre \ + libbz2.so:${PORTSDIR}/archivers/bzip2 + +WRKSRC= ${WRKDIR}/${DISTNAME}/c++ + +GNU_CONFIGURE= yes +USES= gmake shebangfix perl5 python +SHEBANG_FILES= src/app/blast/legacy_blast.pl \ + src/app/blast/update_blastdb.pl \ + src/app/winmasker/windowmasker_2.2.22_adapter.py + +# Requires openmp +USE_GCC= yes +USE_LDCONFIG= yes + +# The test for amq can hang, but amq is not needed so just avoid the test +CONFIGURE_ENV= ncbi_cv_prog_amq_w=no + +# configure chooses /usr/local/bin/ar with no flags +# FreeBSD boost port flagged by configure as untested version +CONFIGURE_ARGS+=AR="ar cr" --without-boost + +# Fix "undefined _ThreadRuneLocale" error on 10.0 +# Fix unknown options in configure +# Add staging support to configure-generated Makefile +post-patch: + ${REINPLACE_CMD} \ + -e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|' \ + -e '/--infodir=DIR/d' \ + -e '/--mandir=DIR/d' \ + ${WRKSRC}/src/build-system/configure + ${REINPLACE_CMD} -e 's|@prefix@|${STAGEDIR}@prefix@|g' \ + ${WRKSRC}/src/build-system/Makefile.in.top + +post-install: + ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/*.so + +.include Added: head/biology/ncbi-blast/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/ncbi-blast/distinfo Mon Oct 6 20:16:35 2014 (r370220) @@ -0,0 +1,2 @@ +SHA256 (ncbi-blast-2.2.30+-src.tar.gz) = 7baa46cf761febf2660ddd9a8f9b5b02d12a3413561a554d2f85d4628a25aaa3 +SIZE (ncbi-blast-2.2.30+-src.tar.gz) = 18937894 Added: head/biology/ncbi-blast/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/ncbi-blast/pkg-descr Mon Oct 6 20:16:35 2014 (r370220) @@ -0,0 +1,8 @@ +The Basic Local Alignment Search Tool (BLAST) finds regions of local +similarity between sequences. The program compares nucleotide or protein +sequences to sequence databases and calculates the statistical +significance of matches. BLAST can be used to infer functional and +evolutionary relationships between sequences as well as help identify +members of gene families. + +WWW: http://blast.ncbi.nlm.nih.gov Added: head/biology/ncbi-blast/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/ncbi-blast/pkg-plist Mon Oct 6 20:16:35 2014 (r370220) @@ -0,0 +1,3894 @@ +bin/blast_formatter +bin/blastdb_aliastool +bin/blastdbcheck +bin/blastdbcmd +bin/blastdbcp +bin/blastn +bin/blastp +bin/blastx +bin/convert2blastmask +bin/datatool +bin/deltablast +bin/dustmasker +bin/gene_info_reader +bin/legacy_blast.pl +bin/makeblastdb +bin/makembindex +bin/makeprofiledb +bin/project_tree_builder +bin/psiblast +bin/rpsblast +bin/rpstblastn +bin/seedtop +bin/segmasker +bin/seqdb_demo +bin/seqdb_perf +bin/tblastn +bin/tblastx +bin/update_blastdb.pl +bin/windowmasker +bin/windowmasker_2.2.22_adapter.py +include/ncbi-tools++/algo/blast/api/bl2seq.hpp +include/ncbi-tools++/algo/blast/api/blast_advprot_options.hpp +include/ncbi-tools++/algo/blast/api/blast_aux.hpp +include/ncbi-tools++/algo/blast/api/blast_dbindex.hpp +include/ncbi-tools++/algo/blast/api/blast_exception.hpp +include/ncbi-tools++/algo/blast/api/blast_mtlock.hpp +include/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp +include/ncbi-tools++/algo/blast/api/blast_options.hpp +include/ncbi-tools++/algo/blast/api/blast_options_builder.hpp +include/ncbi-tools++/algo/blast/api/blast_options_handle.hpp +include/ncbi-tools++/algo/blast/api/blast_prot_options.hpp +include/ncbi-tools++/algo/blast/api/blast_results.hpp +include/ncbi-tools++/algo/blast/api/blast_rps_options.hpp +include/ncbi-tools++/algo/blast/api/blast_seqinfosrc.hpp +include/ncbi-tools++/algo/blast/api/blast_seqinfosrc_aux.hpp +include/ncbi-tools++/algo/blast/api/blast_types.hpp +include/ncbi-tools++/algo/blast/api/blastx_options.hpp +include/ncbi-tools++/algo/blast/api/cdd_pssm_input.hpp +include/ncbi-tools++/algo/blast/api/deltablast.hpp +include/ncbi-tools++/algo/blast/api/deltablast_options.hpp +include/ncbi-tools++/algo/blast/api/disc_nucl_options.hpp +include/ncbi-tools++/algo/blast/api/effsearchspace_calc.hpp +include/ncbi-tools++/algo/blast/api/hspstream_queue.hpp +include/ncbi-tools++/algo/blast/api/local_blast.hpp +include/ncbi-tools++/algo/blast/api/local_db_adapter.hpp +include/ncbi-tools++/algo/blast/api/local_search.hpp +include/ncbi-tools++/algo/blast/api/msa_pssm_input.hpp +include/ncbi-tools++/algo/blast/api/objmgr_query_data.hpp +include/ncbi-tools++/algo/blast/api/objmgrfree_query_data.hpp +include/ncbi-tools++/algo/blast/api/phiblast_nucl_options.hpp +include/ncbi-tools++/algo/blast/api/phiblast_prot_options.hpp +include/ncbi-tools++/algo/blast/api/prelim_stage.hpp +include/ncbi-tools++/algo/blast/api/psi_pssm_input.hpp +include/ncbi-tools++/algo/blast/api/psibl2seq.hpp +include/ncbi-tools++/algo/blast/api/psiblast.hpp +include/ncbi-tools++/algo/blast/api/psiblast_iteration.hpp +include/ncbi-tools++/algo/blast/api/psiblast_options.hpp +include/ncbi-tools++/algo/blast/api/pssm_engine.hpp +include/ncbi-tools++/algo/blast/api/pssm_input.hpp +include/ncbi-tools++/algo/blast/api/query_data.hpp +include/ncbi-tools++/algo/blast/api/remote_blast.hpp +include/ncbi-tools++/algo/blast/api/remote_search.hpp +include/ncbi-tools++/algo/blast/api/repeats_filter.hpp +include/ncbi-tools++/algo/blast/api/rps_aux.hpp +include/ncbi-tools++/algo/blast/api/rpsblast_local.hpp +include/ncbi-tools++/algo/blast/api/rpstblastn_options.hpp +include/ncbi-tools++/algo/blast/api/search_strategy.hpp +include/ncbi-tools++/algo/blast/api/seedtop.hpp +include/ncbi-tools++/algo/blast/api/seqinfosrc_seqdb.hpp +include/ncbi-tools++/algo/blast/api/seqinfosrc_seqvec.hpp +include/ncbi-tools++/algo/blast/api/seqsrc_multiseq.hpp +include/ncbi-tools++/algo/blast/api/seqsrc_seqdb.hpp +include/ncbi-tools++/algo/blast/api/setup_factory.hpp +include/ncbi-tools++/algo/blast/api/sseqloc.hpp +include/ncbi-tools++/algo/blast/api/subj_ranges_set.hpp +include/ncbi-tools++/algo/blast/api/tblastn_options.hpp +include/ncbi-tools++/algo/blast/api/tblastx_options.hpp +include/ncbi-tools++/algo/blast/api/traceback_stage.hpp +include/ncbi-tools++/algo/blast/api/uniform_search.hpp +include/ncbi-tools++/algo/blast/api/version.hpp +include/ncbi-tools++/algo/blast/api/windowmask_filter.hpp +include/ncbi-tools++/algo/blast/blastinput/blast_args.hpp +include/ncbi-tools++/algo/blast/blastinput/blast_fasta_input.hpp +include/ncbi-tools++/algo/blast/blastinput/blast_input.hpp +include/ncbi-tools++/algo/blast/blastinput/blast_input_aux.hpp +include/ncbi-tools++/algo/blast/blastinput/blast_scope_src.hpp +include/ncbi-tools++/algo/blast/blastinput/blastn_args.hpp +include/ncbi-tools++/algo/blast/blastinput/blastp_args.hpp +include/ncbi-tools++/algo/blast/blastinput/blastx_args.hpp +include/ncbi-tools++/algo/blast/blastinput/cmdline_flags.hpp +include/ncbi-tools++/algo/blast/blastinput/deltablast_args.hpp +include/ncbi-tools++/algo/blast/blastinput/igblastn_args.hpp +include/ncbi-tools++/algo/blast/blastinput/igblastp_args.hpp +include/ncbi-tools++/algo/blast/blastinput/psiblast_args.hpp +include/ncbi-tools++/algo/blast/blastinput/rmblastn_args.hpp +include/ncbi-tools++/algo/blast/blastinput/rpsblast_args.hpp +include/ncbi-tools++/algo/blast/blastinput/rpstblastn_args.hpp +include/ncbi-tools++/algo/blast/blastinput/tblastn_args.hpp +include/ncbi-tools++/algo/blast/blastinput/tblastx_args.hpp +include/ncbi-tools++/algo/blast/composition_adjustment/compo_heap.h +include/ncbi-tools++/algo/blast/composition_adjustment/compo_mode_condition.h +include/ncbi-tools++/algo/blast/composition_adjustment/composition_adjustment.h +include/ncbi-tools++/algo/blast/composition_adjustment/composition_constants.h +include/ncbi-tools++/algo/blast/composition_adjustment/matrix_frequency_data.h +include/ncbi-tools++/algo/blast/composition_adjustment/nlm_linear_algebra.h +include/ncbi-tools++/algo/blast/composition_adjustment/optimize_target_freq.h +include/ncbi-tools++/algo/blast/composition_adjustment/redo_alignment.h +include/ncbi-tools++/algo/blast/composition_adjustment/smith_waterman.h +include/ncbi-tools++/algo/blast/composition_adjustment/unified_pvalues.h +include/ncbi-tools++/algo/blast/core/aa_ungapped.h +include/ncbi-tools++/algo/blast/core/blast_aalookup.h +include/ncbi-tools++/algo/blast/core/blast_aascan.h +include/ncbi-tools++/algo/blast/core/blast_def.h +include/ncbi-tools++/algo/blast/core/blast_diagnostics.h +include/ncbi-tools++/algo/blast/core/blast_encoding.h +include/ncbi-tools++/algo/blast/core/blast_engine.h +include/ncbi-tools++/algo/blast/core/blast_export.h +include/ncbi-tools++/algo/blast/core/blast_extend.h +include/ncbi-tools++/algo/blast/core/blast_filter.h +include/ncbi-tools++/algo/blast/core/blast_gapalign.h +include/ncbi-tools++/algo/blast/core/blast_hits.h +include/ncbi-tools++/algo/blast/core/blast_hspfilter.h +include/ncbi-tools++/algo/blast/core/blast_hspstream.h +include/ncbi-tools++/algo/blast/core/blast_kappa.h +include/ncbi-tools++/algo/blast/core/blast_lookup.h +include/ncbi-tools++/algo/blast/core/blast_message.h +include/ncbi-tools++/algo/blast/core/blast_nalookup.h +include/ncbi-tools++/algo/blast/core/blast_nascan.h +include/ncbi-tools++/algo/blast/core/blast_options.h +include/ncbi-tools++/algo/blast/core/blast_parameters.h +include/ncbi-tools++/algo/blast/core/blast_program.h +include/ncbi-tools++/algo/blast/core/blast_psi.h +include/ncbi-tools++/algo/blast/core/blast_query_info.h +include/ncbi-tools++/algo/blast/core/blast_rps.h +include/ncbi-tools++/algo/blast/core/blast_seg.h +include/ncbi-tools++/algo/blast/core/blast_seqsrc.h +include/ncbi-tools++/algo/blast/core/blast_seqsrc_impl.h +include/ncbi-tools++/algo/blast/core/blast_setup.h +include/ncbi-tools++/algo/blast/core/blast_stat.h +include/ncbi-tools++/algo/blast/core/blast_sw.h +include/ncbi-tools++/algo/blast/core/blast_toolkit.h +include/ncbi-tools++/algo/blast/core/blast_traceback.h +include/ncbi-tools++/algo/blast/core/blast_tune.h +include/ncbi-tools++/algo/blast/core/blast_util.h +include/ncbi-tools++/algo/blast/core/gapinfo.h +include/ncbi-tools++/algo/blast/core/gencode_singleton.h +include/ncbi-tools++/algo/blast/core/greedy_align.h +include/ncbi-tools++/algo/blast/core/hspfilter_besthit.h +include/ncbi-tools++/algo/blast/core/hspfilter_collector.h +include/ncbi-tools++/algo/blast/core/hspfilter_culling.h +include/ncbi-tools++/algo/blast/core/link_hsps.h +include/ncbi-tools++/algo/blast/core/lookup_util.h +include/ncbi-tools++/algo/blast/core/lookup_wrap.h +include/ncbi-tools++/algo/blast/core/mb_indexed_lookup.h +include/ncbi-tools++/algo/blast/core/na_ungapped.h +include/ncbi-tools++/algo/blast/core/ncbi_math.h +include/ncbi-tools++/algo/blast/core/ncbi_std.h +include/ncbi-tools++/algo/blast/core/pattern.h +include/ncbi-tools++/algo/blast/core/phi_extend.h +include/ncbi-tools++/algo/blast/core/phi_gapalign.h +include/ncbi-tools++/algo/blast/core/phi_lookup.h +include/ncbi-tools++/algo/blast/core/split_query.h +include/ncbi-tools++/algo/blast/dbindex/dbindex.hpp +include/ncbi-tools++/algo/blast/dbindex/dbindex_sp.hpp +include/ncbi-tools++/algo/blast/dbindex/sequence_istream.hpp +include/ncbi-tools++/algo/blast/dbindex/sequence_istream_bdb.hpp +include/ncbi-tools++/algo/blast/dbindex/sequence_istream_fasta.hpp +include/ncbi-tools++/algo/blast/format/blast_format.hpp +include/ncbi-tools++/algo/blast/format/blastfmtutil.hpp +include/ncbi-tools++/algo/blast/format/blastxml2_format.hpp +include/ncbi-tools++/algo/blast/format/blastxml_format.hpp +include/ncbi-tools++/algo/blast/format/build_archive.hpp +include/ncbi-tools++/algo/blast/format/data4xml2format.hpp +include/ncbi-tools++/algo/blast/format/data4xmlformat.hpp +include/ncbi-tools++/algo/blast/format/vecscreen_run.hpp +include/ncbi-tools++/algo/blast/igblast/igblast.hpp +include/ncbi-tools++/algo/dustmask/sdust.tex +include/ncbi-tools++/algo/dustmask/symdust.hpp +include/ncbi-tools++/algo/segmask/segmask.hpp +include/ncbi-tools++/algo/winmask/README.API +include/ncbi-tools++/algo/winmask/seq_masker.hpp +include/ncbi-tools++/algo/winmask/seq_masker_cache_boost.hpp +include/ncbi-tools++/algo/winmask/seq_masker_istat.hpp +include/ncbi-tools++/algo/winmask/seq_masker_istat_ascii.hpp +include/ncbi-tools++/algo/winmask/seq_masker_istat_bin.hpp +include/ncbi-tools++/algo/winmask/seq_masker_istat_factory.hpp +include/ncbi-tools++/algo/winmask/seq_masker_istat_oascii.hpp +include/ncbi-tools++/algo/winmask/seq_masker_istat_obinary.hpp +include/ncbi-tools++/algo/winmask/seq_masker_ostat.hpp +include/ncbi-tools++/algo/winmask/seq_masker_ostat_ascii.hpp +include/ncbi-tools++/algo/winmask/seq_masker_ostat_bin.hpp +include/ncbi-tools++/algo/winmask/seq_masker_ostat_factory.hpp +include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt.hpp +include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_ascii.hpp +include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_bin.hpp +include/ncbi-tools++/algo/winmask/seq_masker_score.hpp +include/ncbi-tools++/algo/winmask/seq_masker_score_mean.hpp +include/ncbi-tools++/algo/winmask/seq_masker_score_mean_glob.hpp +include/ncbi-tools++/algo/winmask/seq_masker_score_min.hpp +include/ncbi-tools++/algo/winmask/seq_masker_uset_array.hpp +include/ncbi-tools++/algo/winmask/seq_masker_uset_hash.hpp +include/ncbi-tools++/algo/winmask/seq_masker_uset_simple.hpp +include/ncbi-tools++/algo/winmask/seq_masker_util.hpp +include/ncbi-tools++/algo/winmask/seq_masker_window.hpp +include/ncbi-tools++/algo/winmask/seq_masker_window_ambig.hpp +include/ncbi-tools++/algo/winmask/seq_masker_window_pattern.hpp +include/ncbi-tools++/algo/winmask/seq_masker_window_pattern_ambig.hpp +include/ncbi-tools++/algo/winmask/win_mask_config.hpp +include/ncbi-tools++/algo/winmask/win_mask_counts_converter.hpp +include/ncbi-tools++/algo/winmask/win_mask_dup_table.hpp +include/ncbi-tools++/algo/winmask/win_mask_gen_counts.hpp +include/ncbi-tools++/algo/winmask/win_mask_util.hpp +include/ncbi-tools++/cgi/caf.hpp +include/ncbi-tools++/cgi/caf_encoded.hpp +include/ncbi-tools++/cgi/caf_plain.hpp +include/ncbi-tools++/cgi/cgi_exception.hpp +include/ncbi-tools++/cgi/cgi_serial.hpp +include/ncbi-tools++/cgi/cgi_session.hpp +include/ncbi-tools++/cgi/cgi_util.hpp +include/ncbi-tools++/cgi/cgiapp.hpp +include/ncbi-tools++/cgi/cgiapp_cached.hpp +include/ncbi-tools++/cgi/cgictx.hpp +include/ncbi-tools++/cgi/error_codes.hpp +include/ncbi-tools++/cgi/impl/cgi_entry_reader.hpp +include/ncbi-tools++/cgi/ncbicgi.hpp +include/ncbi-tools++/cgi/ncbicgir.hpp +include/ncbi-tools++/cgi/ncbires.hpp +include/ncbi-tools++/cgi/ref_args.hpp +include/ncbi-tools++/cgi/user_agent.hpp +include/ncbi-tools++/common/config/ncbiconf_msvc.h +include/ncbi-tools++/common/config/ncbiconf_msvc_site.h +include/ncbi-tools++/common/config/ncbiconf_universal.h +include/ncbi-tools++/common/config/ncbiconf_xcode.h +include/ncbi-tools++/common/config/ncbiconf_xcode_site.h +include/ncbi-tools++/common/header_template.hpp +include/ncbi-tools++/common/metamodules_doxygen.h +include/ncbi-tools++/common/ncbi_export.h +include/ncbi-tools++/common/ncbi_package_ver.h +include/ncbi-tools++/common/ncbi_pch_impl.hpp +include/ncbi-tools++/common/ncbi_skew_guard.h +include/ncbi-tools++/common/ncbi_source_ver.h +include/ncbi-tools++/common/ncbiconf_impl.h +include/ncbi-tools++/common/test_assert.h +include/ncbi-tools++/common/test_assert_impl.h +include/ncbi-tools++/common/test_data_path.h +include/ncbi-tools++/connect/connect_export.h +include/ncbi-tools++/connect/email_diag_handler.hpp +include/ncbi-tools++/connect/error_codes.hpp +include/ncbi-tools++/connect/ext/ncbi_crypt.h +include/ncbi-tools++/connect/ext/ncbi_dblb.h +include/ncbi-tools++/connect/ext/ncbi_dblb_svcmapper.hpp +include/ncbi-tools++/connect/ext/ncbi_ifconf.h +include/ncbi-tools++/connect/ext/ncbi_iprange.h +include/ncbi-tools++/connect/ext/ncbi_localnet.h +include/ncbi-tools++/connect/impl/server_connection.hpp +include/ncbi-tools++/connect/impl/thread_pool_for_server.hpp +include/ncbi-tools++/connect/ncbi_base64.h +include/ncbi-tools++/connect/ncbi_buffer.h +include/ncbi-tools++/connect/ncbi_conn_exception.hpp +include/ncbi-tools++/connect/ncbi_conn_reader_writer.hpp +include/ncbi-tools++/connect/ncbi_conn_stream.hpp +include/ncbi-tools++/connect/ncbi_conn_test.hpp +include/ncbi-tools++/connect/ncbi_connection.h +include/ncbi-tools++/connect/ncbi_connector.h +include/ncbi-tools++/connect/ncbi_connutil.h +include/ncbi-tools++/connect/ncbi_core.h 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