Date: 25 Oct 2005 18:12:12 -0200 From: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> To: FreeBSD-gnats-submit@FreeBSD.org Cc: dbader@eece.unm.edu Subject: ports/88007: Update port: biology/paml update to 3.14b Message-ID: <20051025201212.66198.qmail@capeta.freebsdbrasil.com.br> Resent-Message-ID: <200510252020.j9PKKB52053749@freefall.freebsd.org>
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>Number: 88007 >Category: ports >Synopsis: Update port: biology/paml update to 3.14b >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Tue Oct 25 20:20:11 GMT 2005 >Closed-Date: >Last-Modified: >Originator: Jean Milanez Melo >Release: FreeBSD 5.3-STABLE i386 >Organization: >Environment: System: FreeBSD capeta.freebsdbrasil.com.br 5.3-STABLE FreeBSD 5.3-STABLE #5: Wed Mar 2 15:03:19 BRT 2005 eksffa@capeta.freebsdbrasil.com.br:/usr/obj/usr/src/sys/CAPETA i386 >Description: - Update port to 3.14b. - Maintainer has been CCed. >How-To-Repeat: >Fix: --- paml.diff begins here --- diff -ruN paml.old/Makefile paml/Makefile --- paml.old/Makefile Sat Nov 6 01:55:37 2004 +++ paml/Makefile Tue Oct 25 18:09:07 2005 @@ -6,15 +6,17 @@ # PORTNAME= paml -PORTVERSION= 3.14 +PORTVERSION= 3.14b +PORTREVISION= 1 CATEGORIES= biology -MASTER_SITES= ftp://abacus.gene.ucl.ac.uk/pub/paml/ +MASTER_SITES= http://abacus.gene.ucl.ac.uk/software/ DISTNAME= ${PORTNAME}${PORTVERSION} MAINTAINER= dbader@eece.unm.edu COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) -WRKSRC= ${WRKDIR}/${DISTNAME}/src +USE_GMAKE= YES +WRKSRC= ${WRKDIR}/${DISTNAME:S/b/''/g}/src MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" BINARIES= baseml basemlg chi2 codeml evolver pamp yn00 @@ -25,7 +27,7 @@ .endfor .if !defined(NOPORTDOCS) ${MKDIR} ${DOCSDIR} - ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/pamlDOC.pdf \ + ${INSTALL_DATA} ${WRKDIR}/${DISTNAME:S/b/''/g}/doc/pamlDOC.pdf \ ${DOCSDIR} .endif diff -ruN paml.old/distinfo paml/distinfo --- paml.old/distinfo Sat Nov 6 01:55:37 2004 +++ paml/distinfo Tue Oct 25 17:53:28 2005 @@ -1,2 +1,2 @@ -MD5 (paml3.14.tar.gz) = 233ef39b09e406dc41fb81e14997b764 -SIZE (paml3.14.tar.gz) = 1744383 +MD5 (paml3.14b.tar.gz) = d71938de2a7d9828fb85ad2e83880a68 +SIZE (paml3.14b.tar.gz) = 2144978 --- paml.diff ends here --- >Release-Note: >Audit-Trail: >Unformatted:
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