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Date:      Wed, 12 Nov 2014 18:48:53 +0000 (UTC)
From:      Antoine Brodin <antoine@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r372500 - in head/science: 2d-rewriter InsightToolkit afni bddsolve bodr buddy cdcl cdf cgnslib chemical-mime-data chemtool chemtool-devel clhep dcl devisor dlpoly-classic fastcap fasth...
Message-ID:  <201411121848.sACImrC3029064@svn.freebsd.org>

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Author: antoine
Date: Wed Nov 12 18:48:53 2014
New Revision: 372500
URL: https://svnweb.freebsd.org/changeset/ports/372500
QAT: https://qat.redports.org/buildarchive/r372500/

Log:
  Cleanup plist

Modified:
  head/science/2d-rewriter/pkg-plist
  head/science/InsightToolkit/pkg-plist
  head/science/afni/Makefile
  head/science/afni/pkg-plist
  head/science/bddsolve/pkg-plist
  head/science/bodr/pkg-plist
  head/science/buddy/pkg-plist
  head/science/cdcl/pkg-plist
  head/science/cdf/Makefile
  head/science/cdf/pkg-plist
  head/science/cgnslib/pkg-plist
  head/science/chemical-mime-data/pkg-plist
  head/science/chemtool-devel/pkg-plist
  head/science/chemtool/pkg-plist
  head/science/clhep/pkg-plist
  head/science/dcl/pkg-plist
  head/science/devisor/Makefile
  head/science/dlpoly-classic/pkg-plist
  head/science/fastcap/pkg-plist
  head/science/fasthenry/pkg-plist
  head/science/fisicalab/pkg-plist
  head/science/gchemutils/pkg-plist
  head/science/getdp/pkg-plist
  head/science/ghmm/pkg-plist
  head/science/grib_api/pkg-plist
  head/science/gtamsanalyzer/pkg-plist
  head/science/h5utils/pkg-plist
  head/science/hdf-java/pkg-plist
  head/science/jmol/pkg-plist
  head/science/libctl/pkg-plist
  head/science/libkml/pkg-plist
  head/science/liboglappth/pkg-plist
  head/science/libsvm/pkg-plist
  head/science/linsmith/pkg-plist
  head/science/massxpert/pkg-plist
  head/science/mbdyn/pkg-plist
  head/science/meep/pkg-plist
  head/science/mei/pkg-plist
  head/science/metaf2xml/Makefile
  head/science/metaf2xml/pkg-plist
  head/science/minc2/pkg-plist
  head/science/mpb/pkg-plist
  head/science/mpqc/Makefile
  head/science/mpqc/pkg-plist
  head/science/ncs/pkg-plist
  head/science/netcdf/pkg-plist
  head/science/openbabel/pkg-plist
  head/science/openkim/pkg-plist
  head/science/paje/pkg-plist
  head/science/py-DendroPy/pkg-plist
  head/science/pynn/pkg-plist
  head/science/svmlight/pkg-plist
  head/science/v_sim/pkg-plist
  head/science/vmd/pkg-plist
  head/science/voro++/pkg-plist
  head/science/xfce4-equake-plugin/pkg-plist

Modified: head/science/2d-rewriter/pkg-plist
==============================================================================
--- head/science/2d-rewriter/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/2d-rewriter/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -5,4 +5,3 @@ man/man1/2d-rewriter.1.gz
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/life2.txt
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sierpinski.txt
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/srloop.txt
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%

Modified: head/science/InsightToolkit/pkg-plist
==============================================================================
--- head/science/InsightToolkit/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/InsightToolkit/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -2721,45 +2721,3 @@ lib/InsightToolkit/libitkzlib.so
 lib/InsightToolkit/libitkzlib.so.2
 lib/InsightToolkit/libitkzlib.so.2.8
 lib/InsightToolkit/libitkzlib.so.2.8.0
-@dirrm lib/InsightToolkit
-@dirrm include/InsightToolkit/gdcm/src
-@dirrm include/InsightToolkit/gdcm/Dicts
-@dirrm include/InsightToolkit/gdcm
-@dirrm include/InsightToolkit/expat
-@dirrm include/InsightToolkit/Utilities/zlib
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/win32-vc70
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/win32-vc60
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/vcl_sys
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/sunpro
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/sgi
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/mwerks
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/iso
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/generic
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/gcc-libstdcxx-v3
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/gcc-295
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/gcc
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/emulation
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/egcs
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/borland56
-@dirrm include/InsightToolkit/Utilities/vxl/vcl/borland55
-@dirrm include/InsightToolkit/Utilities/vxl/vcl
-@dirrm include/InsightToolkit/Utilities/vxl/core/vnl/algo
-@dirrm include/InsightToolkit/Utilities/vxl/core/vnl
-@dirrm include/InsightToolkit/Utilities/vxl/core
-@dirrm include/InsightToolkit/Utilities/vxl
-@dirrm include/InsightToolkit/Utilities/itksys/stl
-@dirrm include/InsightToolkit/Utilities/itksys/ios
-@dirrm include/InsightToolkit/Utilities/itksys
-@dirrm include/InsightToolkit/Utilities/NrrdIO
-@dirrm include/InsightToolkit/Utilities/MetaIO
-@dirrm include/InsightToolkit/Utilities
-@dirrm include/InsightToolkit/SpatialObject
-@dirrm include/InsightToolkit/Numerics/Statistics
-@dirrm include/InsightToolkit/Numerics/NeuralNetworks
-@dirrm include/InsightToolkit/Numerics/FEM
-@dirrm include/InsightToolkit/Numerics
-@dirrm include/InsightToolkit/IO
-@dirrm include/InsightToolkit/Common
-@dirrm include/InsightToolkit/BasicFilters
-@dirrm include/InsightToolkit/Algorithms
-@dirrm include/InsightToolkit

Modified: head/science/afni/Makefile
==============================================================================
--- head/science/afni/Makefile	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/afni/Makefile	Wed Nov 12 18:48:53 2014	(r372500)
@@ -11,7 +11,7 @@
 
 PORTNAME=	afni
 PORTVERSION=	2012.04.17.2129
-PORTREVISION=	11
+PORTREVISION=	12
 CATEGORIES=	science biology graphics
 MASTER_SITES=	http://personalpages.tds.net/~jwbacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
 		http://www.acadix.biz/Ports/distfiles/AFNI/${PORTVERSION}/
@@ -40,7 +40,8 @@ CONFLICTS=	im-[0-9]* \
 		nifticlib-[0-9]* \
 		open-usp-tukubai-[0-9]*
 
-USES=		gettext iconv gmake motif perl5
+USES=		gettext iconv gmake motif perl5 shebangfix
+SHEBANG_FILES=	suma_change_spec 3dPAR2AFNI.pl
 
 # Some prereqs use gcc anyway
 USE_GCC=	yes

Modified: head/science/afni/pkg-plist
==============================================================================
--- head/science/afni/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/afni/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -1025,9 +1025,3 @@ man/man1/afni.1.gz
 %%PORTDOCS%%%%DOCSDIR%%/README.volreg
 %%PORTDOCS%%%%DOCSDIR%%/README.web
 %%PORTDOCS%%%%DOCSDIR%%/README.ziad
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
-@dirrm %%DATADIR%%/funstuff
-@dirrm %%DATADIR%%
-@dirrm lib/afni
-@dirrm include/afni
-@dirrmtry etc/mri

Modified: head/science/bddsolve/pkg-plist
==============================================================================
--- head/science/bddsolve/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/bddsolve/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -1,4 +1,3 @@
 bin/bddsolve
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/reach.b
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sat.b
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%

Modified: head/science/bodr/pkg-plist
==============================================================================
--- head/science/bodr/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/bodr/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -13,7 +13,3 @@ libdata/pkgconfig/bodr.pc
 %%PORTDOCS%%%%DOCSDIR%%/biblio/elements_biblio.html
 %%PORTDOCS%%%%DOCSDIR%%/biblio/isotopes_biblio.html
 %%PORTDOCS%%%%DOCSDIR%%/biblio/space-groups_biblio.html
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/biblio
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
-@dirrm %%DATADIR%%/dicts
-@dirrm %%DATADIR%%

Modified: head/science/buddy/pkg-plist
==============================================================================
--- head/science/buddy/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/buddy/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -10,4 +10,3 @@ lib/libbdd.so.0.0.0
 %%PORTDOCS%%%%PORTDOCS%%%%DOCSDIR%%/tech.txt
 %%PORTDOCS%%%%PORTDOCS%%%%DOCSDIR%%/README
 %%PORTDOCS%%%%PORTDOCS%%%%DOCSDIR%%/AUTHORS
-%%PORTDOCS%%@dirrm %%DOCSDIR%%

Modified: head/science/cdcl/pkg-plist
==============================================================================
--- head/science/cdcl/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/cdcl/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -122,4 +122,3 @@ lib/cdcldbase/state_usa
 lib/libcdcl.a
 lib/libcdcl.so
 lib/libf2c4dcl.a
-@dirrm lib/cdcldbase

Modified: head/science/cdf/Makefile
==============================================================================
--- head/science/cdf/Makefile	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/cdf/Makefile	Wed Nov 12 18:48:53 2014	(r372500)
@@ -3,7 +3,7 @@
 
 PORTNAME=	cdf3
 PORTVERSION=	3.3.0
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	science
 MASTER_SITES=	${MASTER_SITE_LOCAL}	\
 		ftp://cdaweb.gsfc.nasa.gov/pub/cdf/dist/cdf${VER}/unix/
@@ -51,6 +51,7 @@ post-install:
 	${INSTALL_DATA} ${PORTDOCS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR}
 	${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
 	${INSTALL_DATA} ${WRKSRC}/samples/* ${STAGEDIR}${EXAMPLESDIR}
+	${SED} -i '' 's,${STAGEDIR},,g' ${STAGEDIR}${PREFIX}/bin/definitions.?
 
 regression-test:
 	(cd ${BUILD_WRKSRC} ;	\

Modified: head/science/cdf/pkg-plist
==============================================================================
--- head/science/cdf/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/cdf/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -65,6 +65,3 @@ lib/libcdf.so.0
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ij01r39.cdf
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/read_example1.c
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/zfia10x.cdf
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
-@dirrm lib/cdf/help
-@dirrm lib/cdf

Modified: head/science/cgnslib/pkg-plist
==============================================================================
--- head/science/cgnslib/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/cgnslib/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -99,5 +99,3 @@ lib/libcgns.so.3.2
 %%TOOLS%%share/cgnstools/utilities.mnu
 %%TOOLS%%share/cgnstools/vgrid.tcl
 %%TOOLS%%share/cgnstools/vtk.tcl
-%%TOOLS%%@dirrm share/cgnstools
-%%TOOLS%%@dirrm bin/cgnstools

Modified: head/science/chemical-mime-data/pkg-plist
==============================================================================
--- head/science/chemical-mime-data/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/chemical-mime-data/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -105,8 +105,3 @@ share/mimelnk/chemical/x-ncbi-asn1.deskt
 share/mimelnk/chemical/x-shelx.desktop
 share/mimelnk/chemical/x-vmd.desktop
 share/mimelnk/chemical/x-xyz.desktop
-@dirrm share/mime/chemical
-@dirrmtry share/mime-info
-@dirrm share/mimelnk/chemical
-@dirrmtry share/mimelnk
-@dirrm share/doc/chemical-mime-data

Modified: head/science/chemtool-devel/pkg-plist
==============================================================================
--- head/science/chemtool-devel/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/chemtool-devel/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -41,7 +41,6 @@ man/man1/cht.1.gz
 %%EXAMPLESDIR%%/tetracyclin.cht
 %%EXAMPLESDIR%%/v3000.mol
 %%EXAMPLESDIR%%/viagra.cht
-@dirrm %%EXAMPLESDIR%%
 share/locale/cs/LC_MESSAGES/chemtool.mo
 share/locale/de/LC_MESSAGES/chemtool.mo
 share/locale/fr/LC_MESSAGES/chemtool.mo

Modified: head/science/chemtool/pkg-plist
==============================================================================
--- head/science/chemtool/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/chemtool/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -39,4 +39,3 @@ man/man1/cht.1.gz
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tetracyclin.cht
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/v3000.mol
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/viagra.cht
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%

Modified: head/science/clhep/pkg-plist
==============================================================================
--- head/science/clhep/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/clhep/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -331,17 +331,3 @@ libdata/CLHEP-%%VERSION%%/CLHEPConfigVer
 libdata/CLHEP-%%VERSION%%/CLHEPLibraryDepends-%%CMAKE_BUILD_TYPE%%.cmake
 libdata/CLHEP-%%VERSION%%/CLHEPLibraryDepends.cmake
 libdata/pkgconfig/clhep.pc
-@dirrm libdata/CLHEP-%%VERSION%%
-@dirrm include/CLHEP/Vector
-@dirrm include/CLHEP/Utility
-@dirrm include/CLHEP/Units
-@dirrm include/CLHEP/RefCount
-@dirrm include/CLHEP/RandomObjects
-@dirrm include/CLHEP/Random
-@dirrm include/CLHEP/Matrix
-@dirrm include/CLHEP/Geometry
-@dirrm include/CLHEP/GenericFunctions
-@dirrm include/CLHEP/Exceptions
-@dirrm include/CLHEP/Evaluator
-@dirrm include/CLHEP/Cast
-@dirrm include/CLHEP

Modified: head/science/dcl/pkg-plist
==============================================================================
--- head/science/dcl/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/dcl/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -119,4 +119,3 @@ lib/dcldbase/plate_world
 lib/dcldbase/pref_japan
 lib/dcldbase/state_usa
 lib/libf77dcl548.a
-@dirrm lib/dcldbase

Modified: head/science/devisor/Makefile
==============================================================================
--- head/science/devisor/Makefile	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/devisor/Makefile	Wed Nov 12 18:48:53 2014	(r372500)
@@ -32,28 +32,24 @@ OPTIONS_DEFINE=	DOCS
 do-install:
 	${INSTALL_SCRIPT} ${WRKDIR}/devisorgrid.sh ${STAGEDIR}${PREFIX}/bin/devisorgrid
 	cd ${WRKSRC} \
-	  && ${FIND} ${DATAFILES} -type d -exec ${MKDIR} ${STAGEDIR}${DATADIR}/{} \; \
-	  && ${FIND} ${DATAFILES} -type f -not -name '*.pdf' -print -exec ${INSTALL_DATA} {} ${STAGEDIR}${DATADIR}/{} \;
+	  && ${COPYTREE_SHARE} "${DATAFILES}" ${STAGEDIR}${DATADIR} "-not -name *\.pdf"
 	cd ${WRKSRC} \
-	  && ${FIND} ${CLASSFILES} -type d -exec ${MKDIR} ${STAGEDIR}${DATADIR}/{} \; \
-	  && ${FIND} ${CLASSFILES} -name '*.class' -type f -print -exec ${INSTALL_DATA} {} ${STAGEDIR}${DATADIR}/{} \;
+	  && ${COPYTREE_SHARE} "${CLASSFILES}" ${STAGEDIR}${DATADIR} "-name *\.class"
 .if ${PORT_OPTIONS:MDOCS}
 	cd ${WRKSRC}/manual \
-	  && ${FIND} . -type d -exec ${MKDIR} ${STAGEDIR}${DOCSDIR}/{} \; \
-	  && ${FIND} . -type f -name '*.pdf' -exec ${INSTALL_DATA} {} ${STAGEDIR}${DOCSDIR}/{} \;
+	  && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR} "-name *\.pdf"
 .endif
 
 post-install:
 	@cd ${WRKSRC} \
 	  && ${FIND} -s ${DATAFILES} -type f -not -name '*.pdf' \
-	    | ${SED} -ne 's,^,${DATADIR:S,${STAGEDIR}${PREFIX}/,,}/,p' >> ${TMPPLIST} \
-	  && ${FIND} -s -d ${DATAFILES} -type d \
-	    | ${SED} -ne 's,^,@dirrm ${DATADIR:S,${STAGEDIR}${PREFIX}/,,}/,p' >> ${TMPPLIST}
+	    | ${SED} -ne 's,^,${DATADIR_REL}/,p' >> ${TMPPLIST} \
+	  && ${FIND} -s -d ${DATAFILES} -type d -empty \
+	    | ${SED} -ne 's,^,@dir ${DATADIR_REL}/,p' >> ${TMPPLIST}
 	@cd ${WRKSRC} \
 	  && ${FIND} -s ${CLASSFILES} -name '*.class' -type f \
-	    | ${SED} -ne 's,^,${DATADIR:S,${STAGEDIR}${PREFIX}/,,}/,p' >> ${TMPPLIST} \
-	  && ${FIND} -s -d ${CLASSFILES} -type d \
-	    | ${SED} -ne 's,^,@dirrm ${DATADIR:S,${STAGEDIR}${PREFIX}/,,}/,p' >> ${TMPPLIST}
-	@${ECHO_CMD} '@dirrm ${DATADIR:S,${PREFIX}/,,}' >> ${TMPPLIST}
+	    | ${SED} -ne 's,^,${DATADIR_REL}/,p' >> ${TMPPLIST} \
+	  && ${FIND} -s -d ${CLASSFILES} -type d -empty \
+	    | ${SED} -ne 's,^,@dir ${DATADIR_REL}/,p' >> ${TMPPLIST}
 
 .include <bsd.port.mk>

Modified: head/science/dlpoly-classic/pkg-plist
==============================================================================
--- head/science/dlpoly-classic/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/dlpoly-classic/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -9,6 +9,3 @@ bin/dlpoly-classic-mpi
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/execute/select
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/execute/store
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/execute/supa
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/execute
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
-%%PORTDOCS%%@dirrm %%DOCSDIR%%

Modified: head/science/fastcap/pkg-plist
==============================================================================
--- head/science/fastcap/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/fastcap/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -42,5 +42,3 @@ bin/pyragen
 %%PORTDOCS%%%%DOCSDIR%%/tcad.ps.gz
 %%PORTDOCS%%%%DOCSDIR%%/ug.ps.gz
 %%PORTDOCS%%%%DOCSDIR%%/readme.gz
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
-%%PORTDOCS%%@dirrm %%DOCSDIR%%

Modified: head/science/fasthenry/pkg-plist
==============================================================================
--- head/science/fasthenry/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/fasthenry/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -4,7 +4,6 @@ bin/zbuf
 %%PORTDOCS%%%%DOCSDIR%%/ms_thesis.ps.gz
 %%PORTDOCS%%%%DOCSDIR%%/nonuniform_manual.ps.gz
 %%PORTDOCS%%%%DOCSDIR%%/readme.gz
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/30pin.inp
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/3d_example2.inp
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/3d_example2_coarse.inp
@@ -34,4 +33,3 @@ bin/zbuf
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tree_sample.hier
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tree_sample.inp
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/vias.inp
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%

Modified: head/science/fisicalab/pkg-plist
==============================================================================
--- head/science/fisicalab/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/fisicalab/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -1979,47 +1979,4 @@ GNUstep/Local/Applications/FisicaLab.app
 GNUstep/Local/Applications/FisicaLab.app/Resources/menuConversionFactors.plist
 GNUstep/Local/Applications/FisicaLab.app/stamp.make
 GNUstep/Local/Tools/FisicaLab
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/staticRigidBodies.gorm
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/preferences.gorm
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/dynamicsCircular.gorm
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/Fisica.gorm
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/staticRigidBodies.gorm
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/preferences.gorm
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/dynamicsCircular.gorm
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/calorimetry.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/Fisica.gorm
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/COPYING.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources
-@dirrm GNUstep/Local/Applications/FisicaLab.app
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/dynamics.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/dynamicsCircular.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/dynamicsCircularExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/dynamicsExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/introduction.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/kinematics.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/kinematicsCircular.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/kinematicsCircularExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/kinematicsExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/statics.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/staticsExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/staticsRigid.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/staticsRigidExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/calorimetry.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/dynamics.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/dynamicsCircular.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/dynamicsCircularExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/dynamicsExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/introduction.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/kinematics.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/kinematicsCircular.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/kinematicsCircularExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/kinematicsExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/statics.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/staticsExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/staticsRigid.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/staticsRigidExamples.rtfd
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/Spanish.lproj/help.gorm
-@dirrm GNUstep/Local/Applications/FisicaLab.app/Resources/English.lproj/help.gorm
 

Modified: head/science/gchemutils/pkg-plist
==============================================================================
--- head/science/gchemutils/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/gchemutils/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -324,62 +324,3 @@ share/locale/ru/LC_MESSAGES/gchemutils-%
 share/locale/zh_CN/LC_MESSAGES/gchemutils-%%VER%%.mo
 share/locale/zh_TW/LC_MESSAGES/gchemutils-%%VER%%.mo
 share/mime/packages/gchemutils.xml
-@dirrm share/gchemutils/%%VER%%/ui/table
-@dirrm share/gchemutils/%%VER%%/ui/paint/plugins/text
-@dirrm share/gchemutils/%%VER%%/ui/paint/plugins/templates
-@dirrm share/gchemutils/%%VER%%/ui/paint/plugins/selection
-@dirrm share/gchemutils/%%VER%%/ui/paint/plugins/residues
-@dirrm share/gchemutils/%%VER%%/ui/paint/plugins/cycles
-@dirrm share/gchemutils/%%VER%%/ui/paint/plugins/bonds
-@dirrm share/gchemutils/%%VER%%/ui/paint/plugins/atoms
-@dirrm share/gchemutils/%%VER%%/ui/paint/plugins/arrows
-@dirrm share/gchemutils/%%VER%%/ui/paint/plugins
-@dirrm share/gchemutils/%%VER%%/ui/paint
-@dirrm share/gchemutils/%%VER%%/ui/libgcu
-@dirrm share/gchemutils/%%VER%%/ui/crystal
-@dirrm share/gchemutils/%%VER%%/ui/calc
-@dirrm share/gchemutils/%%VER%%/ui
-@dirrm share/gchemutils/%%VER%%/pixmaps
-@dirrm share/gchemutils/%%VER%%/paint/themes
-@dirrm share/gchemutils/%%VER%%/paint/templates
-@dirrm share/gchemutils/%%VER%%/paint
-@dirrm share/gchemutils/%%VER%%
-@dirrm share/gchemutils
-@dirrm share/omf/gchem3d-%%VER%%
-@dirrm share/omf/gchemcalc-%%VER%%
-@dirrm share/omf/gchempaint-%%VER%%
-@dirrm share/omf/gchemtable-%%VER%%
-@dirrm share/omf/gcrystal-%%VER%%
-@dirrm share/omf/gspectrum-%%VER%%
-@dirrm share/gnome/help/gchemtable-%%VER%%/C/figures
-@dirrm share/gnome/help/gchemtable-%%VER%%/C
-@dirrm share/gnome/help/gchemtable-%%VER%%
-@dirrm share/gnome/help/gspectrum-%%VER%%/C/figures
-@dirrm share/gnome/help/gspectrum-%%VER%%/C
-@dirrm share/gnome/help/gspectrum-%%VER%%
-@dirrm share/gnome/help/gchempaint-%%VER%%/C/figures
-@dirrm share/gnome/help/gchempaint-%%VER%%/C
-@dirrm share/gnome/help/gchempaint-%%VER%%
-@dirrm share/gnome/help/gcrystal-%%VER%%/C/figures
-@dirrm share/gnome/help/gcrystal-%%VER%%/C
-@dirrm share/gnome/help/gcrystal-%%VER%%
-@dirrm share/gnome/help/gchemcalc-%%VER%%/C/figures
-@dirrm share/gnome/help/gchemcalc-%%VER%%/C
-@dirrm share/gnome/help/gchemcalc-%%VER%%
-@dirrm share/gnome/help/gchem3d-%%VER%%/C/figures
-@dirrm share/gnome/help/gchem3d-%%VER%%/C
-@dirrm share/gnome/help/gchem3d-%%VER%%
-@dirrmtry share/mimelnk/application
-@dirrmtry share/mimelnk
-%%XUL%%@dirrmtry lib/xulrunner/plugins
-%%XUL%%@dirrmtry lib/xulrunner
-@dirrm lib/goffice/%%GOFFICE%%/plugins/gchemutils
-@dirrm lib/gchemutils/%%VER%%/plugins/paint
-@dirrm lib/gchemutils/%%VER%%/plugins/nuts
-@dirrm lib/gchemutils/%%VER%%/plugins/cml
-@dirrm lib/gchemutils/%%VER%%/plugins/cif
-@dirrm lib/gchemutils/%%VER%%/plugins/cdxml
-@dirrm lib/gchemutils/%%VER%%/plugins/cdx
-@dirrm lib/gchemutils/%%VER%%/plugins
-@dirrm lib/gchemutils/%%VER%%
-@dirrm lib/gchemutils

Modified: head/science/getdp/pkg-plist
==============================================================================
--- head/science/getdp/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/getdp/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -42,6 +42,3 @@ man/man1/getdp.1.gz
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/magnet.msh
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/magnet.pro
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/magnet.txt
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/texinfo
-%%PORTDOCS%%@dirrm %%DOCSDIR%%

Modified: head/science/ghmm/pkg-plist
==============================================================================
--- head/science/ghmm/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/ghmm/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -43,5 +43,3 @@ lib/libghmm.so
 lib/libghmm.so.0
 lib/libghmm.so.0.0.7
 %%DATADIR%%/PHI_001_20.dat
-@dirrmtry %%DATADIR%%
-@dirrmtry include/ghmm

Modified: head/science/grib_api/pkg-plist
==============================================================================
--- head/science/grib_api/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/grib_api/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -2789,62 +2789,3 @@ libdata/pkgconfig/grib_api_f90.pc
 %%DATADIR%%/samples/sh_pl_grib2.tmpl
 %%DATADIR%%/samples/sh_sfc_grib1.tmpl
 %%DATADIR%%/samples/sh_sfc_grib2.tmpl
-@dirrm %%DATADIR%%/samples
-@dirrm %%DATADIR%%/ifs_samples/grib1_mlgrib2_ieee64
-@dirrm %%DATADIR%%/ifs_samples/grib1_mlgrib2
-@dirrm %%DATADIR%%/ifs_samples/grib1
-@dirrm %%DATADIR%%/ifs_samples
-@dirrm %%DATADIR%%/definitions/tide
-@dirrm %%DATADIR%%/definitions/mars/eswi
-@dirrm %%DATADIR%%/definitions/mars
-@dirrm %%DATADIR%%/definitions/gts
-@dirrm %%DATADIR%%/definitions/grib2/tables/local/ecmf/4
-@dirrm %%DATADIR%%/definitions/grib2/tables/local/ecmf
-@dirrm %%DATADIR%%/definitions/grib2/tables/local
-@dirrm %%DATADIR%%/definitions/grib2/tables/9
-@dirrm %%DATADIR%%/definitions/grib2/tables/8
-@dirrm %%DATADIR%%/definitions/grib2/tables/7
-@dirrm %%DATADIR%%/definitions/grib2/tables/6
-@dirrm %%DATADIR%%/definitions/grib2/tables/5
-@dirrm %%DATADIR%%/definitions/grib2/tables/4
-@dirrm %%DATADIR%%/definitions/grib2/tables/3
-@dirrm %%DATADIR%%/definitions/grib2/tables/2
-@dirrm %%DATADIR%%/definitions/grib2/tables/13
-@dirrm %%DATADIR%%/definitions/grib2/tables/12
-@dirrm %%DATADIR%%/definitions/grib2/tables/11
-@dirrm %%DATADIR%%/definitions/grib2/tables/10
-@dirrm %%DATADIR%%/definitions/grib2/tables/1
-@dirrm %%DATADIR%%/definitions/grib2/tables/0
-@dirrm %%DATADIR%%/definitions/grib2/tables
-@dirrm %%DATADIR%%/definitions/grib2/localConcepts/lfpw1
-@dirrm %%DATADIR%%/definitions/grib2/localConcepts/lfpw
-@dirrm %%DATADIR%%/definitions/grib2/localConcepts/kwbc
-@dirrm %%DATADIR%%/definitions/grib2/localConcepts/eswi
-@dirrm %%DATADIR%%/definitions/grib2/localConcepts/ekmi
-@dirrm %%DATADIR%%/definitions/grib2/localConcepts/egrr
-@dirrm %%DATADIR%%/definitions/grib2/localConcepts/edzw
-@dirrm %%DATADIR%%/definitions/grib2/localConcepts/ecmf
-@dirrm %%DATADIR%%/definitions/grib2/localConcepts/cnmc
-@dirrm %%DATADIR%%/definitions/grib2/localConcepts
-@dirrm %%DATADIR%%/definitions/grib2/local/1098
-@dirrm %%DATADIR%%/definitions/grib2/local
-@dirrm %%DATADIR%%/definitions/grib2
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/sbsj
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/rjtd
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/lowm
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/lfpw
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/kwbc
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/eswi
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/enmi
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/ekmi
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/edzw
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/ecmf
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/cnmc
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts/ammc
-@dirrm %%DATADIR%%/definitions/grib1/localConcepts
-@dirrm %%DATADIR%%/definitions/grib1
-@dirrm %%DATADIR%%/definitions/common
-@dirrm %%DATADIR%%/definitions/cdf
-@dirrm %%DATADIR%%/definitions/budg
-@dirrm %%DATADIR%%/definitions
-@dirrm %%DATADIR%%

Modified: head/science/gtamsanalyzer/pkg-plist
==============================================================================
--- head/science/gtamsanalyzer/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/gtamsanalyzer/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -98,15 +98,3 @@ GNUstep/Local/Applications/GTAMSAnalyzer
 GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources/wbicn.tif
 GNUstep/Local/Applications/GTAMSAnalyzer.app/stamp.make
 GNUstep/Local/Tools/GTAMSAnalyzer
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources/preference.gorm
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources/myProject.gorm
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources/myPanedResults.gorm
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources/kappa.gorm
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources/codeBrowser.gorm
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources/MyPanedDocument.gorm
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources/MWSummaryReport.gorm
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources/GTAMSAnalyzer.gorm
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources/FreqCount.gorm
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources/FindPanel.gorm
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app/Resources
-@dirrm GNUstep/Local/Applications/GTAMSAnalyzer.app

Modified: head/science/h5utils/pkg-plist
==============================================================================
--- head/science/h5utils/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/h5utils/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -30,5 +30,3 @@ man/man1/h5tovtk.1.gz
 %%DATADIR%%/colormaps/yarg
 %%DATADIR%%/colormaps/yellow
 %%DATADIR%%/colormaps/dkbluered
-@dirrm %%DATADIR%%/colormaps
-@dirrm %%DATADIR%%

Modified: head/science/hdf-java/pkg-plist
==============================================================================
--- head/science/hdf-java/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/hdf-java/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -386,29 +386,3 @@ bin/hdfview.sh
 %%JAVAJARDIR%%/netcdf.jar
 %%JAVAJARDIR%%/slf4j-api-1.7.5.jar
 %%JAVAJARDIR%%/slf4j-nop-1.7.5.jar
-@dirrmtry %%JAVAJARDIR%%/ext
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/resources
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/view/class-use
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/view
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/object/h5/class-use
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/object/h5
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/object/h4/class-use
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/object/h4
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/object/class-use
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/object
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/class-use
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/hdflib
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs/class-use
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/class-use
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/class-use
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/class-use
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa/hdf
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs/ncsa
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/javadocs
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/UsersGuide/images
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%/UsersGuide
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%

Modified: head/science/jmol/pkg-plist
==============================================================================
--- head/science/jmol/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/jmol/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -77,11 +77,3 @@ bin/jmol
 %%JAVAJARDIR%%/Jmol.jar
 %%JAVAJARDIR%%/JmolData.jar
 %%JAVAJARDIR%%/JmolLib.jar
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/xml2po-modes
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/po
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/history
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/guide
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/applet
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/source
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/JmolUserGuide
-%%PORTDOCS%%@dirrm %%DOCSDIR%%

Modified: head/science/libctl/pkg-plist
==============================================================================
--- head/science/libctl/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/libctl/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -59,10 +59,3 @@ man/man1/gen-ctl-io.1.gz
 %%DATADIR%%/utils/geom.scm
 %%DATADIR%%/utils/nlopt-constants.scm
 %%DATADIR%%/utils/nlopt.c
-@dirrm %%DATADIR%%/utils
-@dirrm %%DATADIR%%/base
-@dirrm %%DATADIR%%
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/.libs
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/.deps
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
-%%PORTDOCS%%@dirrm %%DOCSDIR%%

Modified: head/science/libkml/pkg-plist
==============================================================================
--- head/science/libkml/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/libkml/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -182,20 +182,4 @@ lib/liburiparser.a
 lib/liburiparser.so
 lib/liburiparser.so.1
 lib/liburiparser.so.1.0.5
-@dirrm lib/libkml
-@dirrm include/kml/xsd
-@dirrm include/kml/third_party/boost_1_34_1/boost/detail
-@dirrm include/kml/third_party/boost_1_34_1/boost/config/stdlib
-@dirrm include/kml/third_party/boost_1_34_1/boost/config/platform
-@dirrm include/kml/third_party/boost_1_34_1/boost/config/no_tr1
-@dirrm include/kml/third_party/boost_1_34_1/boost/config/compiler
-@dirrm include/kml/third_party/boost_1_34_1/boost/config
-@dirrm include/kml/third_party/boost_1_34_1/boost
-@dirrm include/kml/third_party/boost_1_34_1
-@dirrm include/kml/third_party
-@dirrm include/kml/regionator
-@dirrm include/kml/engine
-@dirrm include/kml/dom
-@dirrm include/kml/convenience
-@dirrm include/kml/base
-@dirrm include/kml
+@dir lib/libkml

Modified: head/science/liboglappth/pkg-plist
==============================================================================
--- head/science/liboglappth/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/liboglappth/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -11,4 +11,3 @@ lib/liboglappth.so
 lib/liboglappth.so.2
 lib/liboglappth.so.2.0.1
 libdata/pkgconfig/liboglappth.pc
-@dirrm include/oglappth

Modified: head/science/libsvm/pkg-plist
==============================================================================
--- head/science/libsvm/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/libsvm/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -8,4 +8,3 @@ lib/libsvm.so.2
 %%DATADIR%%/easy.py
 %%DATADIR%%/grid.py
 %%DATADIR%%/subset.py
-@dirrm %%DATADIR%%

Modified: head/science/linsmith/pkg-plist
==============================================================================
--- head/science/linsmith/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/linsmith/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -24,5 +24,3 @@ share/locale/zh/LC_MESSAGES/linsmith.mo
 share/pixmaps/linsmith/linsmith_icon.xpm
 share/pixmaps/linsmith/smith4.png
 share/pixmaps/linsmith/smithent.png
-@dirrm share/pixmaps/linsmith
-@dirrm %%DATADIR%%

Modified: head/science/massxpert/pkg-plist
==============================================================================
--- head/science/massxpert/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/massxpert/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -209,16 +209,3 @@ share/applications/massxpert.desktop
 %%DATADIR%%/dictionaries/protein-1-to-3.dic
 %%DATADIR%%/dictionaries/protein-3-to-1.dic
 %%DATADIR%%/chem_pad.conf
-@dirrmtry %%DATADIR%%/pol-seqs
-@dirrmtry %%DATADIR%%/pol-chem-defs/saccharide
-@dirrmtry %%DATADIR%%/pol-chem-defs/protein-3-letters
-@dirrmtry %%DATADIR%%/pol-chem-defs/protein-1-letter
-@dirrmtry %%DATADIR%%/pol-chem-defs/nucac
-@dirrmtry %%DATADIR%%/pol-chem-defs/dna
-@dirrmtry %%DATADIR%%/pol-chem-defs
-@dirrmtry %%DATADIR%%/locales
-@dirrmtry %%DATADIR%%/dictionaries
-@dirrmtry %%DATADIR%%
-@dirrm %%DOCSDIR%%
-@dirrm lib/massxpert/plugins
-@dirrm lib/massxpert

Modified: head/science/mbdyn/pkg-plist
==============================================================================
--- head/science/mbdyn/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/mbdyn/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -40,7 +40,3 @@ share/awk/mbdyn2pod.awk
 share/awk/periodize.awk
 share/c81/naca0012.c81
 share/octave/pod.m
-@dirrm share/octave
-@dirrm share/c81
-@dirrm share/awk
-@dirrm share/Aster

Modified: head/science/meep/pkg-plist
==============================================================================
--- head/science/meep/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/meep/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -10,5 +10,3 @@ include/meep/vec.hpp
 %%DATADIR%%/casimir.scm
 %%DATADIR%%/meep-enums.scm
 %%DATADIR%%/meep.scm
-@dirrm %%DATADIR%%
-@dirrm include/meep

Modified: head/science/mei/pkg-plist
==============================================================================
--- head/science/mei/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/mei/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -14,6 +14,3 @@ lib/libmei.so.0.0.0
 %%PYTHON_SITELIBDIR%%/mei/mei.pyc
 %%PYTHON_SITELIBDIR%%/mei/mei.pyo
 man/man1/mei-config.1.gz
-@dirrm %%PYTHON_SITELIBDIR%%/mei
-@dirrmtry %%PYTHON_SITELIBDIR%%
-@dirrmtry %%PYTHON_LIBDIR%%

Modified: head/science/metaf2xml/Makefile
==============================================================================
--- head/science/metaf2xml/Makefile	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/metaf2xml/Makefile	Wed Nov 12 18:48:53 2014	(r372500)
@@ -3,6 +3,7 @@
 
 PORTNAME=	metaf2xml
 PORTVERSION=	1.55
+PORTREVISION=	1
 CATEGORIES=	science perl5
 MASTER_SITES=	SF/${PORTNAME}/${PORTVERSION}
 
@@ -20,8 +21,9 @@ MAKE_ARGS=	CGI_BIN_DIR=${PREFIX}/www/met
 		METAF2XML_DOC=${DOCSDIR} \
 		METAF2XML_XSL=${DATADIR}
 NO_BUILD=	yes
-USES=		perl5 tar:tgz
+USES=		perl5 shebangfix tar:tgz
 USE_PERL5=	install run
+SHEBANG_FILES=	metaf.pl metaf2xml.pl metafsrc2raw.pl
 
 .include <bsd.port.options.mk>
 

Modified: head/science/metaf2xml/pkg-plist
==============================================================================
--- head/science/metaf2xml/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/metaf2xml/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -49,11 +49,3 @@ man/man3/metaf2xml::src2raw.3pm.gz
 %%WWWDIR%%/htdocs/metaf.xsl
 %%WWWDIR%%/htdocs/metaf2xml.css
 %%WWWDIR%%/htdocs/stations.xml
-%%APACHE%%@dirrmtry %%APACHEETCDIR%%/Includes
-%%APACHE%%@dirrmtry %%APACHEETCDIR%%
-@dirrmtry %%SITE_PERL%%/metaf2xml
-%%PORTDOCS%%@dirrmtry %%DOCSDIR%%
-@dirrmtry %%DATADIR%%
-@dirrmtry %%WWWDIR%%/cgi-bin
-@dirrmtry %%WWWDIR%%/htdocs
-@dirrmtry %%WWWDIR%%

Modified: head/science/minc2/pkg-plist
==============================================================================
--- head/science/minc2/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/minc2/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -122,4 +122,3 @@ man/man1/xfmconcat.1.gz
 man/man1/xfmflip.1.gz
 man/man1/xfminvert.1.gz
 man/man3/ParseArgv.3.gz
-@dirrm include/volume_io

Modified: head/science/mpb/pkg-plist
==============================================================================
--- head/science/mpb/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/mpb/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -5,4 +5,3 @@ man/man1/mpb.1.gz
 man/man1/mpb-data.1.gz
 man/man1/mpb-split.1.gz
 share/libctl/specs/mpb.scm
-@dirrmtry share/libctl/specs

Modified: head/science/mpqc/Makefile
==============================================================================
--- head/science/mpqc/Makefile	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/mpqc/Makefile	Wed Nov 12 18:48:53 2014	(r372500)
@@ -110,13 +110,13 @@ do-install:
 		${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR})
 	cd ${STAGEDIR}${PREFIX}; ${FIND} share/doc/mpqc \
 	   \( -type f -or -type l \) | ${SORT} >> ${TMPPLIST}
-	cd ${STAGEDIR}${PREFIX}; ${FIND} share/doc/mpqc -type d | \
-	   ${SORT} -r | ${SED} -e 's/^/@dirrm /g' >> ${TMPPLIST}
+	cd ${STAGEDIR}${PREFIX}; ${FIND} share/doc/mpqc -type d -empty | \
+	   ${SORT} -r | ${SED} -e 's/^/@dir /g' >> ${TMPPLIST}
 .endif
 	cd ${STAGEDIR}${PREFIX}; ${FIND} share/mpqc \
 	   \( -type f -or -type l \) | ${SORT} >> ${TMPPLIST}
-	cd ${STAGEDIR}${PREFIX}; ${FIND} share/mpqc -type d | ${SORT} -r | \
-	   ${SED} -e 's/^/@dirrm /g' >> ${TMPPLIST}
+	cd ${STAGEDIR}${PREFIX}; ${FIND} share/mpqc -type d -empty | ${SORT} -r | \
+	   ${SED} -e 's/^/@dir /g' >> ${TMPPLIST}
 
 validate:
 	(cd ${WRKSRC}/src/bin/mpqc/validate && \

Modified: head/science/mpqc/pkg-plist
==============================================================================
--- head/science/mpqc/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/mpqc/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -322,35 +322,6 @@ include/chemistry/qc/psi/psiinput.h
 include/chemistry/qc/psi/psiwfn.h
 include/scconfig.h
 include/scdirlist.h
-@dirrm include/util/state
-@dirrm include/util/render
-@dirrm include/util/ref
-@dirrm include/util/options
-@dirrm include/util/misc
-@dirrm include/util/keyval
-@dirrm include/util/group
-@dirrm include/util/container
-@dirrm include/util/class
-@dirrm include/util
-@dirrm include/math/symmetry
-@dirrm include/math/scmat
-@dirrm include/math/optimize
-@dirrm include/math/isosurf
-@dirrm include/math
-@dirrm include/chemistry/solvent
-@dirrm include/chemistry/qc/wfn
-@dirrm include/chemistry/qc/scf
-@dirrm include/chemistry/qc/psi
-@dirrm include/chemistry/qc/oint3
-@dirrm include/chemistry/qc/mbpt
-@dirrm include/chemistry/qc/intv3
-@dirrm include/chemistry/qc/dft
-@dirrm include/chemistry/qc/basis
-@dirrm include/chemistry/qc/mbptr12
-@dirrm include/chemistry/qc/cints
-@dirrm include/chemistry/qc
-@dirrm include/chemistry/molecule
-@dirrm include/chemistry
 lib/libSCbasis.a
 lib/libSCbasis.so
 lib/libSCbasis.so.7

Modified: head/science/ncs/pkg-plist
==============================================================================
--- head/science/ncs/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/ncs/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -883,38 +883,3 @@ share/locale/fr/LC_MESSAGES/ncs.mo
 %%DATADIR%%/users/rayt/usray3.f90
 %%DATADIR%%/users/rayt/usray4.f90
 %%DATADIR%%/users/rayt/usray5.f90
-@dirrm %%DATADIR%%/users/rayt
-@dirrm %%DATADIR%%/users/pprt
-@dirrm %%DATADIR%%/users/lagr
-@dirrm %%DATADIR%%/users/fuel
-@dirrm %%DATADIR%%/users/elec
-@dirrm %%DATADIR%%/users/ctwr
-@dirrm %%DATADIR%%/users/cplv
-@dirrm %%DATADIR%%/users/cogz
-@dirrm %%DATADIR%%/users/cfbl
-@dirrm %%DATADIR%%/users/base
-@dirrm %%DATADIR%%/users/atmo
-@dirrm %%DATADIR%%/users
-@dirrm %%DATADIR%%/data/thch
-@dirrm %%DATADIR%%/data/mati
-@dirrm %%DATADIR%%/data
-@dirrm %%DATADIR%%
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/3-stratified_junction/mesh
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/3-stratified_junction/case5
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/3-stratified_junction
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/2-full_domain/mesh
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/2-full_domain/case4
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/2-full_domain/case3
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/2-full_domain/case2
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/2-full_domain
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/1-simple_junction/mesh
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/1-simple_junction/case1
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/1-simple_junction
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
-@dirrm %%PYTHON_SITELIBDIR%%/ncs/Pages
-@dirrm %%PYTHON_SITELIBDIR%%/ncs/Base/icons/SplashScreen
-@dirrm %%PYTHON_SITELIBDIR%%/ncs/Base/icons
-@dirrm %%PYTHON_SITELIBDIR%%/ncs/Base
-@dirrm %%PYTHON_SITELIBDIR%%/ncs
-@dirrmtry etc/bash_completion.d

Modified: head/science/netcdf/pkg-plist
==============================================================================
--- head/science/netcdf/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/netcdf/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -17,5 +17,3 @@ share/cmake/Modules/netcdf-config-versio
 share/cmake/Modules/netcdf-config.cmake
 share/cmake/Modules/netcdf-targets-%%CMAKE_BUILD_TYPE%%.cmake
 share/cmake/Modules/netcdf-targets.cmake
-@dirrmtry share/cmake/Modules
-@dirrmtry share/cmake

Modified: head/science/openbabel/pkg-plist
==============================================================================
--- head/science/openbabel/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/openbabel/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -273,16 +273,3 @@ share/openbabel/%%VERSION%%/superatom.tx
 share/openbabel/%%VERSION%%/svgformat.script
 share/openbabel/%%VERSION%%/torlib.txt
 share/openbabel/%%VERSION%%/types.txt
-@dirrm share/openbabel/%%VERSION%%
-@dirrm share/openbabel
-%%PYTHON%%@dirrmtry %%PYTHON_SITELIBDIR%%
-%%PYTHON%%@dirrmtry %%PYTHON_LIBDIR%%
-@dirrm lib/openbabel/%%VERSION%%
-@dirrm lib/openbabel
-@dirrm lib/cmake/openbabel2
-@dirrmtry lib/cmake
-@dirrm include/openbabel-2.0/openbabel/stereo
-@dirrm include/openbabel-2.0/openbabel/math
-@dirrm include/openbabel-2.0/openbabel
-@dirrm include/openbabel-2.0
-@dirrm include/inchi

Modified: head/science/openkim/pkg-plist
==============================================================================
--- head/science/openkim/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/openkim/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -6,4 +6,3 @@ include/KIM_API/Unit_Handling.h
 include/KIM_API/model_init_include.h
 include/KIM_API/model_kim_str_include.h
 lib/libkim.a
-@dirrm include/KIM_API

Modified: head/science/paje/pkg-plist
==============================================================================
--- head/science/paje/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/paje/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -158,59 +158,3 @@ GNUstep/Local/Library/Headers/StatViewer
 GNUstep/Local/Library/Headers/StorageController/AnchorFilter.h
 GNUstep/Local/Library/Headers/StorageController/Encapsulate.h
 GNUstep/Local/Tools/Paje
-@dirrm GNUstep/Local/Library/Headers/StorageController
-@dirrm GNUstep/Local/Library/Headers/StatViewer
-@dirrm GNUstep/Local/Library/Headers/SpaceTimeViewer
-@dirrm GNUstep/Local/Library/Headers/ReductionFilter
-@dirrm GNUstep/Local/Library/Headers/OrderFilter
-@dirrm GNUstep/Local/Library/Headers/ImbricationFilter
-@dirrm GNUstep/Local/Library/Headers/General
-@dirrm GNUstep/Local/Library/Headers/FieldFilter
-@dirrm GNUstep/Local/Library/Headers/EntityTypeFilter
-@dirrm GNUstep/Local/Library/Headers/ContainerFilter
-@dirrm GNUstep/Local/Library/Headers/AggregatingFilter
-@dirrm GNUstep/Local/Library/Bundles/Paje/StorageController.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/StorageController.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/StatViewer.bundle/Resources/StatViewer.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/StatViewer.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/StatViewer.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/SpaceTimeViewer.bundle/Resources/SpaceTime.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/SpaceTimeViewer.bundle/Resources/STEntityTypeLayout.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/SpaceTimeViewer.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/SpaceTimeViewer.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/ReductionFilter.bundle/Resources/ReductionFilter.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/ReductionFilter.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/ReductionFilter.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/PajeSimulator.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/PajeSimulator.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/PajeEventDecoder.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/PajeEventDecoder.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/OrderFilter.bundle/Resources/Order.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/OrderFilter.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/OrderFilter.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/ImbricationFilter.bundle/Resources/InsetLimit.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/ImbricationFilter.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/ImbricationFilter.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/General.bundle/Resources/SourceTextViewer.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/General.bundle/Resources/PajeEntityInspector.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/General.bundle/Resources/HierarchyBrowser.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/General.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/General.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/FileReader.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/FileReader.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/FieldFilter.bundle/Resources/FieldFilter.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/FieldFilter.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/FieldFilter.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/EntityTypeFilter.bundle/Resources/EntityTypeSelector.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/EntityTypeFilter.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/EntityTypeFilter.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/ContainerFilter.bundle/Resources/ContainerSelector.gorm
-@dirrm GNUstep/Local/Library/Bundles/Paje/ContainerFilter.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/ContainerFilter.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje/AggregatingFilter.bundle/Resources
-@dirrm GNUstep/Local/Library/Bundles/Paje/AggregatingFilter.bundle
-@dirrm GNUstep/Local/Library/Bundles/Paje
-@dirrm GNUstep/Local/Applications/Paje.app/Resources/PajeEntityInspector.gorm
-@dirrm GNUstep/Local/Applications/Paje.app/Resources/Paje.gorm
-@dirrm GNUstep/Local/Applications/Paje.app/Resources
-@dirrm GNUstep/Local/Applications/Paje.app

Modified: head/science/py-DendroPy/pkg-plist
==============================================================================
--- head/science/py-DendroPy/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/py-DendroPy/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -477,15 +477,3 @@ bin/sumtrees.py
 %%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.py
 %%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.pyc
 %%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.pyo
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy/dataio
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy/dataobject
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy/interop
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy/mathlib
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy/test/data/chars
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy/test/data/mixed
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy/test/data/trees
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy/test/data
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy/test/support
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy/test
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy/utility
-@dirrmtry %%PYTHON_SITELIBDIR%%/dendropy

Modified: head/science/pynn/pkg-plist
==============================================================================
--- head/science/pynn/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/pynn/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -202,20 +202,3 @@
 %%PYTHON_SITELIBDIR%%/pyNN/utility.py
 %%PYTHON_SITELIBDIR%%/pyNN/utility.pyc
 %%PYTHON_SITELIBDIR%%/pyNN/utility.pyo
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/standardmodels
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/recording
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/pcsim/standardmodels
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/pcsim
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/neuron/standardmodels
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/neuron
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/nest/standardmodels
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/nest
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/string
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/jinja2
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/cheetah
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/descriptions
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/brian/standardmodels
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN/brian
-@dirrm %%PYTHON_SITELIBDIR%%/pyNN

Modified: head/science/svmlight/pkg-plist
==============================================================================
--- head/science/svmlight/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/svmlight/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -7,5 +7,3 @@ lib/libsvmlight.a
 lib/libsvmlight.so
 lib/libsvmlight.so.1
 %%PORTDOCS%%%%DOCSDIR%%/LICENSE.txt
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
-@dirrm include/svmlight

Modified: head/science/v_sim/pkg-plist
==============================================================================
--- head/science/v_sim/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/v_sim/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -235,23 +235,3 @@ share/pixmaps/v_sim.xpm
 %%DATADIR%%/v_sim.par
 %%DATADIR%%/v_sim.rc
 %%DATADIR%%/v_sim.res
-@dirrm %%DATADIR%%/pixmaps
-@dirrm %%DATADIR%%
-@dirrmtry share/icons/hicolor/scalable/apps
-@dirrmtry share/icons/hicolor/scalable
-@dirrmtry share/icons/hicolor/48x48/apps
-@dirrmtry share/icons/hicolor/48x48
-@dirrmtry share/icons/hicolor/32x32/apps
-@dirrmtry share/icons/hicolor/32x32
-@dirrmtry share/icons/hicolor/24x24/apps
-@dirrmtry share/icons/hicolor/24x24
-@dirrmtry share/icons/hicolor/22x22/apps
-@dirrmtry share/icons/hicolor/22x22
-@dirrmtry share/icons/hicolor/16x16/apps
-@dirrmtry share/icons/hicolor/16x16
-@dirrmtry share/icons/hicolor
-@dirrmtry share/icons
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
-@dirrm lib/v_sim/plug-ins
-@dirrm lib/v_sim

Modified: head/science/vmd/pkg-plist
==============================================================================
--- head/science/vmd/pkg-plist	Wed Nov 12 17:59:34 2014	(r372499)
+++ head/science/vmd/pkg-plist	Wed Nov 12 18:48:53 2014	(r372500)
@@ -1181,162 +1181,4 @@ lib/vmd/surf_%%VMD_ARCH%%
 lib/vmd/tachyon_%%VMD_ARCH%%
 lib/vmd/vmd_%%VMD_ARCH%%
 lib/vmd/vmd_completion.dat
-@dirrm lib/vmd/doc
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/bin/catdcd4.0
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/bin/cionize1.0
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/bin
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/molfile
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/autopsf1.3
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/cionize1.0
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/clustalw1.1
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/hesstrans1.0
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/mutator1.4
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.6
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/CVS
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1
-@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2

*** DIFF OUTPUT TRUNCATED AT 1000 LINES ***



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