Date: Thu, 2 Nov 2000 19:31:03 +1100 (EST) From: Tony Maher <tonym@dt.home> To: FreeBSD-gnats-submit@freebsd.org Subject: ports/22522: Port update: biology/ncbi-toolkit Message-ID: <200011020831.eA28V3U70221@dt.home>
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>Number: 22522 >Category: ports >Synopsis: Port update: biology/ncbi-toolkit >Confidential: no >Severity: non-critical >Priority: high >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Thu Nov 02 00:40:01 PST 2000 >Closed-Date: >Last-Modified: >Originator: Tony Maher >Release: FreeBSD 4.2-BETA i386 >Organization: eBioinformatics >Environment: >Description: NCBI have released new toolkit. THe distfiles do not have any version info (but old copies are available). THe new toolkit also removes on executable. >How-To-Repeat: >Fix: diff -ruN ncbi-toolkit.orig/Makefile ncbi-toolkit/Makefile --- ncbi-toolkit.orig/Makefile Mon Oct 30 00:56:23 2000 +++ ncbi-toolkit/Makefile Thu Nov 2 09:16:54 2000 @@ -6,7 +6,7 @@ # PORTNAME= ncbi.toolkit -PORTVERSION= 2000.07.07 +PORTVERSION= 2000.10.31 CATEGORIES= biology MASTER_SITES= ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/ DISTNAME= ncbi diff -ruN ncbi-toolkit.orig/distinfo ncbi-toolkit/distinfo --- ncbi-toolkit.orig/distinfo Mon Oct 30 00:56:23 2000 +++ ncbi-toolkit/distinfo Thu Nov 2 09:16:32 2000 @@ -1 +1 @@ -MD5 (ncbi/ncbi.tar.gz) = d201fc46e5e31e930ab73cc2dab79a2e +MD5 (ncbi/ncbi.tar.gz) = 3da64fe88e0f9a9f68b82b4042c9efb1 diff -ruN ncbi-toolkit.orig/files/patch-aa ncbi-toolkit/files/patch-aa --- ncbi-toolkit.orig/files/patch-aa Mon Oct 30 00:56:24 2000 +++ ncbi-toolkit/files/patch-aa Thu Nov 2 09:17:49 2000 @@ -5,7 +5,7 @@ $(SRC11) $(SRC8) $(SRC7) $(SRC6) $(SRC5) $(SRC3) \ $(SRC2) $(SRC1) $(OTHERLIBS) -lsocket -lnsl + -+EXE= Cn3Dv3d Nentrez Psequin \ ++EXE= Nentrez Psequin \ + asn2fast asn2ff asndhuff asntool \ + bl2seq blast.REAL blastall blastcl3 blastclust blastpgp \ + cdscan checksub copymat \ diff -ruN ncbi-toolkit.orig/pkg-plist ncbi-toolkit/pkg-plist --- ncbi-toolkit.orig/pkg-plist Mon Oct 30 00:56:23 2000 +++ ncbi-toolkit/pkg-plist Thu Nov 2 09:54:07 2000 @@ -1,4 +1,3 @@ -bin/Cn3Dv3d bin/Nentrez bin/Psequin bin/asn2fast >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message
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