Date: Tue, 14 Jan 2025 03:26:20 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 08fa8f9c4bbe - main - biology/py-scikit-bio: update 0.6.2 =?utf-8?Q?=E2=86=92?= 0.6.3 Message-ID: <202501140326.50E3QKho040555@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=08fa8f9c4bbe32743a414305614fc6e9371d8e1b commit 08fa8f9c4bbe32743a414305614fc6e9371d8e1b Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2025-01-14 01:51:33 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2025-01-14 03:26:05 +0000 biology/py-scikit-bio: update 0.6.2 → 0.6.3 --- biology/py-scikit-bio/Makefile | 11 ++++++++--- biology/py-scikit-bio/distinfo | 6 +++--- 2 files changed, 11 insertions(+), 6 deletions(-) diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile index 03efdcfe9af3..4297e08f2c1c 100644 --- a/biology/py-scikit-bio/Makefile +++ b/biology/py-scikit-bio/Makefile @@ -1,5 +1,5 @@ PORTNAME= scikit-bio -DISTVERSION= 0.6.2 +DISTVERSION= 0.6.3 CATEGORIES= biology education python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -34,10 +34,9 @@ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biom-format>0:biology/py-biom-format@${PY_FL ${PYTHON_PKGNAMEPREFIX}statsmodels>=0.14.0:math/py-statsmodels@${PY_FLAVOR} USES= python -USE_PYTHON= pep517 cython autoplist pytest # tests fail to run, see https://github.com/biocore/scikit-bio/issues/1846 +USE_PYTHON= pep517 cython autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} -TEST_WRKSRC= ${WRKSRC}/skbio/tests CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}ddtrace # lib/python3.8/site-packages/benchmarks/__init__.py @@ -53,4 +52,10 @@ post-install: ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*${PYTHON_EXT_SUFFIX}.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*/*${PYTHON_EXT_SUFFIX}.so +do-test: # tests fail to run in a regular way, see https://github.com/biocore/scikit-bio/issues/1846 + @cd ${STAGEDIR}${PYTHON_SITELIBDIR} && \ + ${SETENV} ${TEST_ENV} pytest . + +# tests as of 0.6.3: 2792 passed, 30 skipped, 56 warnings in 250.28s (0:04:10) + .include <bsd.port.mk> diff --git a/biology/py-scikit-bio/distinfo b/biology/py-scikit-bio/distinfo index fa11401cb467..370eba0445bd 100644 --- a/biology/py-scikit-bio/distinfo +++ b/biology/py-scikit-bio/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1720838021 -SHA256 (scikit-bio-0.6.2.tar.gz) = af217ad12243cdaeef74a8f3bebe0d04aefda2a22d963d634201a36318b1a404 -SIZE (scikit-bio-0.6.2.tar.gz) = 2699488 +TIMESTAMP = 1736808587 +SHA256 (scikit-bio-0.6.3.tar.gz) = f06cc87a1823902906821819e66f7cd704563a9f8cdf6720296a42dcbc2fe1c2 +SIZE (scikit-bio-0.6.3.tar.gz) = 5356619
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