From owner-freebsd-ports-bugs@FreeBSD.ORG Wed Jan 21 09:30:02 2009 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 436E91065673 for ; Wed, 21 Jan 2009 09:30:02 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 1DA3F8FC16 for ; Wed, 21 Jan 2009 09:30:02 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.3/8.14.3) with ESMTP id n0L9U1on070564 for ; Wed, 21 Jan 2009 09:30:01 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.3/8.14.3/Submit) id n0L9U1H0070562; Wed, 21 Jan 2009 09:30:01 GMT (envelope-from gnats) Resent-Date: Wed, 21 Jan 2009 09:30:01 GMT Resent-Message-Id: <200901210930.n0L9U1H0070562@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, bf Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 7196E1065672 for ; Wed, 21 Jan 2009 09:22:08 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id 5E30F8FC13 for ; Wed, 21 Jan 2009 09:22:08 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.3/8.14.3) with ESMTP id n0L9M8hw003978 for ; Wed, 21 Jan 2009 09:22:08 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.3/8.14.3/Submit) id n0L9M8i0003977; Wed, 21 Jan 2009 09:22:08 GMT (envelope-from nobody) Message-Id: <200901210922.n0L9M8i0003977@www.freebsd.org> Date: Wed, 21 Jan 2009 09:22:08 GMT From: bf To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/130812: [PATCH] math/jags : fix miscellaneous problems X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 21 Jan 2009 09:30:03 -0000 >Number: 130812 >Category: ports >Synopsis: [PATCH] math/jags : fix miscellaneous problems >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Wed Jan 21 09:30:01 UTC 2009 >Closed-Date: >Last-Modified: >Originator: bf >Release: 8-CURRENT i386 >Organization: - >Environment: >Description: -fix location of pkgconfig data -fix linker flags -USE_LDCONFIG -respect NOPORTEXAMPLES -bump PORTREVISION (I am the maintainer.) >How-To-Repeat: >Fix: Patch attached with submission follows: diff -ruN jags.orig/Makefile jags/Makefile --- jags.orig/Makefile 2009-01-21 02:17:41.581368462 -0500 +++ jags/Makefile 2009-01-21 04:14:19.122973330 -0500 @@ -8,6 +8,7 @@ PORTNAME= jags PORTVERSION= 1.0.3 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= http://www-fis.iarc.fr/~martyn/software/jags/ DISTNAME= ${PORTNAME:U}-${PORTVERSION} @@ -33,14 +34,21 @@ DIST_SUBDIR= ${PORTNAME} GNU_CONFIGURE= yes -CONFIGURE_ENV= LDFLAGS=-L${PREFIX}/lib +CONFIGURE_ENV= LDFLAGS=-L${LOCALBASE}/lib USE_FORTRAN= yes +USE_LDCONFIG= yes + +post-patch: + ${REINPLACE_CMD} -e 's|[(]libdir[)]/pkgconfig|(prefix)/libdata/pkgconfig|g' \ + ${WRKSRC}/etc/Makefile.in post-install: .if !defined(NOPORTDOCS) ${MKDIR} ${DOCSDIR} ${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/jags_user_manual.pdf \ ${DOCSDIR} +.endif +.if !defined(NOPORTEXAMPLES) ${MKDIR} ${EXAMPLESDIR} ( cd ${EXAMPLESDIR}; \ ${PAX} -rzf ${DISTDIR}/${DIST_SUBDIR}/classic-bugs.tar.gz \ diff -ruN jags.orig/pkg-plist jags/pkg-plist --- jags.orig/pkg-plist 2009-01-21 02:17:41.582369427 -0500 +++ jags/pkg-plist 2009-01-21 04:14:19.158961703 -0500 @@ -70,344 +70,344 @@ lib/libjrmath.la lib/libjrmath.so lib/libjrmath.so.0 -lib/pkgconfig/jags.pc +libdata/pkgconfig/jags.pc libexec/jags-terminal %%PORTDOCS%%%%DOCSDIR%%/jags_user_manual.pdf -%%PORTDOCS%%%%EXAMPLESDIR%%/R/Rcheck.R -%%PORTDOCS%%%%EXAMPLESDIR%%/R/bench.R -%%PORTDOCS%%%%EXAMPLESDIR%%/R/check.R -%%PORTDOCS%%%%EXAMPLESDIR%%/ReadMe -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/Makefile -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/blocker/ReadMe -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/blocker/bench-test1.R -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/blocker/bench-test2.R -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/blocker/bench-test3.R -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/blocker/blocker-data.R -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/blocker/blocker-init.R -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/blocker/blocker.bug 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%%EXAMPLESDIR%%/vol2/schools +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/pigs +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/orange +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/jaw +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/ice +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/hearts +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/eyes +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/dugongs +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/cervix +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/birats +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/biops +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/beetles +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/asia +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/alli +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/air +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2 +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/seeds +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/salm +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/rats +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/pump +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/oxford +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/mice +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/lsat +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/litters +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/line +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/leuk +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/kidney +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/inhaler +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/equiv +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/epil +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/dyes +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/bones +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/blocker +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1 +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/R +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%% %%PORTDOCS%%@dirrm %%DOCSDIR%% @dirrm lib/JAGS/modules @dirrm lib/JAGS >Release-Note: >Audit-Trail: >Unformatted: