From owner-svn-ports-all@freebsd.org Tue Nov 27 08:05:37 2018 Return-Path: Delivered-To: svn-ports-all@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id C0E22113E8CD; Tue, 27 Nov 2018 08:05:37 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 627946A0FB; Tue, 27 Nov 2018 08:05:37 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 43437186EE; Tue, 27 Nov 2018 08:05:37 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id wAR85blZ068222; Tue, 27 Nov 2018 08:05:37 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id wAR85aiW068218; Tue, 27 Nov 2018 08:05:36 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <201811270805.wAR85aiW068218@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Tue, 27 Nov 2018 08:05:36 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r485989 - in head/misc: . snakemake X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/misc: . snakemake X-SVN-Commit-Revision: 485989 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Rspamd-Queue-Id: 627946A0FB X-Spamd-Result: default: False [1.32 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_SPAM_SHORT(0.12)[0.120,0]; NEURAL_SPAM_MEDIUM(0.69)[0.687,0]; NEURAL_SPAM_LONG(0.51)[0.511,0]; ASN(0.00)[asn:11403, ipnet:2610:1c1:1::/48, country:US] X-Rspamd-Server: mx1.freebsd.org X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 27 Nov 2018 08:05:38 -0000 Author: yuri Date: Tue Nov 27 08:05:36 2018 New Revision: 485989 URL: https://svnweb.freebsd.org/changeset/ports/485989 Log: New port: snakemake/Makefile: Workflow management system Added: head/misc/snakemake/ head/misc/snakemake/Makefile (contents, props changed) head/misc/snakemake/distinfo (contents, props changed) head/misc/snakemake/pkg-descr (contents, props changed) Modified: head/misc/Makefile Modified: head/misc/Makefile ============================================================================== --- head/misc/Makefile Tue Nov 27 07:53:33 2018 (r485988) +++ head/misc/Makefile Tue Nov 27 08:05:36 2018 (r485989) @@ -507,6 +507,7 @@ SUBDIR += sloccount SUBDIR += sls SUBDIR += smssend + SUBDIR += snakemake SUBDIR += soapysdr SUBDIR += solarized SUBDIR += spamcalc Added: head/misc/snakemake/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/misc/snakemake/Makefile Tue Nov 27 08:05:36 2018 (r485989) @@ -0,0 +1,29 @@ +# $FreeBSD$ + +PORTNAME= snakemake +DISTVERSION= 5.3.0 +CATEGORIES= misc +MASTER_SITES= CHEESESHOP + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Workflow management system + +LICENSE= MIT + +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}configargparse>0:devel/py-configargparse@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}datrie>0:devel/py-datrie@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}GitPython>0:devel/py-gitpython@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}ratelimiter>0:devel/py-ratelimiter@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}wrapt>0:devel/py-wrapt@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}yaml>0:devel/py-yaml@${PY_FLAVOR} + +USES= python:3.5+ +USE_PYTHON= distutils autoplist + +NO_ARCH= yes + +.include Added: head/misc/snakemake/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/misc/snakemake/distinfo Tue Nov 27 08:05:36 2018 (r485989) @@ -0,0 +1,3 @@ +TIMESTAMP = 1543303780 +SHA256 (snakemake-5.3.0.tar.gz) = 612a16f2bba580c47183e4f752ed40b034852541ca3e96e480d01fb30ad9570c +SIZE (snakemake-5.3.0.tar.gz) = 168283 Added: head/misc/snakemake/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/misc/snakemake/pkg-descr Tue Nov 27 08:05:36 2018 (r485989) @@ -0,0 +1,7 @@ +Snakemake is a workflow management system that aims to reduce the complexity of +creating workflows by providing a fast and comfortable execution environment, +together with a clean and modern specification language in python style. +Snakemake workflows are essentially Python scripts extended by declarative code +to define rules. Rules describe how to create output files from input files. + +WWW: https://bitbucket.org/snakemake/snakemake/src/master/