From owner-freebsd-ports-bugs@FreeBSD.ORG Sat Dec 10 21:40:09 2011 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 5FCA21065676 for ; Sat, 10 Dec 2011 21:40:09 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 231EE8FC15 for ; Sat, 10 Dec 2011 21:40:09 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.5/8.14.5) with ESMTP id pBALe9cq082987 for ; Sat, 10 Dec 2011 21:40:09 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.5/8.14.5/Submit) id pBALe8Wn082986; Sat, 10 Dec 2011 21:40:09 GMT (envelope-from gnats) Resent-Date: Sat, 10 Dec 2011 21:40:09 GMT Resent-Message-Id: <201112102140.pBALe8Wn082986@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Jan Beich Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id C64FB106566B for ; Sat, 10 Dec 2011 21:31:11 +0000 (UTC) (envelope-from jbeich@tormail.net) Received: from server2.hudsonvalleyhost.com (server2.hudsonvalleyhost.com [66.7.195.77]) by mx1.freebsd.org (Postfix) with ESMTP id 974A68FC13 for ; Sat, 10 Dec 2011 21:31:11 +0000 (UTC) Received: from jennifer.idxf.com ([85.17.122.36]:54482 helo=internal.tormail.net) by server2.hudsonvalleyhost.com with esmtpsa (TLSv1:RC4-SHA:128) (Exim 4.69) (envelope-from ) id 1RZUVi-0048OD-5t for FreeBSD-gnats-submit@freebsd.org; Sat, 10 Dec 2011 16:31:11 -0500 Received: from jbeich by internal.tormail.net with local (Exim 4.63) (envelope-from ) id 1RZUUb-0000uh-6P for FreeBSD-gnats-submit@freebsd.org; Sat, 10 Dec 2011 21:30:04 +0000 Message-Id: <1RZUUb-0000uh-6P@internal.tormail.net> Date: Sat, 10 Dec 2011 11:32:30 -0900 From: Jan Beich To: FreeBSD-gnats-submit@FreeBSD.org Cc: Subject: ports/163172: [patch] biology/primer3: respect CC X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 10 Dec 2011 21:40:09 -0000 >Number: 163172 >Category: ports >Synopsis: [patch] biology/primer3: respect CC >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Sat Dec 10 21:40:08 UTC 2011 >Closed-Date: >Last-Modified: >Originator: Jan Beich >Release: FreeBSD 10.0-CURRENT amd64 >Organization: >Environment: # slightly different from pointyhat $ export PATH=~/.bin:$PATH $ for cc in CC cc c++ gcc g++ cpp; do ln -s /usr/bin/false ~/.bin/${cc}; done >Description: While here, use `+=' consistently for *FLAGS. >How-To-Repeat: http://pointyhat.freebsd.org/errorlogs/amd64-errorlogs/e.9-exp.20110723205754/primer3-1.1.4.log >Fix: --- cc.diff begins here --- Index: biology/primer3/Makefile =================================================================== RCS file: /a/.csup/ports/biology/primer3/Makefile,v retrieving revision 1.13 diff -u -p -r1.13 Makefile --- biology/primer3/Makefile 29 Dec 2010 20:04:12 -0000 1.13 +++ biology/primer3/Makefile 10 Dec 2011 20:29:22 -0000 @@ -19,9 +19,10 @@ DOCUMENTS= README.txt example post-patch: @${REINPLACE_CMD} \ + -e 's#^CC *=#CC ?=#;' \ -e 's#^CFLAGS.*#CFLAGS += \$$\(CC_OPTS\)#;' \ -e 's#CC_OPTS = -g#CC_OPTS =#;' \ - -e 's#LDFLAGS = -g#LDFLAGS ?=#;' \ + -e 's#LDFLAGS = -g#LDFLAGS +=#;' \ -e 's#^WHITEHEAD_SPECIFIC_HACK.*##;' \ ${WRKDIR}/src/Makefile --- cc.diff ends here --- >Release-Note: >Audit-Trail: >Unformatted: