Date: Sun, 20 Jun 2021 23:16:50 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 130releng-armv6-quarterly][biology/emboss] Failed for emboss-6.6.0_4 in package/timeout Message-ID: <202106202316.15KNGohh081386@beefy8.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: wen@FreeBSD.org Log URL: http://beefy8.nyi.freebsd.org/data/130releng-armv6-quarterly/711a4ba94c32/logs/emboss-6.6.0_4.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=130releng-armv6-quarterly&build=711a4ba94c32 Log: =>> Building biology/emboss build started at Sun Jun 20 19:08:05 UTC 2021 port directory: /usr/ports/biology/emboss package name: emboss-6.6.0_4 building for: FreeBSD 130releng-armv6-quarterly-job-12 13.0-RELEASE-p2 FreeBSD 13.0-RELEASE-p2 1300139 arm maintained by: wen@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1300121 Jail OSVERSION: 1300139 Job Id: 12 !!! Jail is newer than host. (Jail: 1300139, Host: 1300121) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300139 UNAME_v=FreeBSD 13.0-RELEASE-p2 1300139 UNAME_r=13.0-RELEASE-p2 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/130releng-armv6-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/130releng-armv6-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=130releng-armv6-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/130releng-armv6-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for emboss-6.6.0_4: DOCS=on: Build and/or install documentation X11=on: X11 (graphics) support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- wen@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --with-docroot=/usr/local/emboss/share/EMBOSS/doc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local/emboss ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/emboss/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- MOTIFLIB="-L/usr/local/lib -lXm" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/emboss/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local/emboss LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-DLIBICONV_PLUG" LDFLAGS=" -L/usr/local/lib -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -DLIBICONV_PLUG " MANPREFIX="/usr/local/emboss" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL _MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local/emboss LIB32DIR=lib DOCSDIR="share/EMBOSS/doc" EXAMPLESDIR="share/examples/emboss" DATADIR="share/EMBOSS" WWWDIR="www/emboss" ETCDIR="etc/emboss" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local/emboss DATADIR=/usr/local/emboss/share/EMBOSS PREFIX=/usr/local/emboss LOCALBASE=/usr/local DATADIR=/usr/local/emboss/share/EMBOSS DOCSDIR=/usr/local/emboss/share/EMBOSS/doc EXAMPLESDIR=/usr/local/emboss/share/examples/emboss WWWDIR=/usr/local/emboss/www/emboss ETCDIR=/usr/local/emboss/etc/emboss --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=13.0-RELEASE-p2 OSREL=13.0 OSVERSION=1300139 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> emboss-6.6.0_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.3.txz [130releng-armv6-quarterly-job-12] Installing pkg-1.16.3... [130releng-armv6-quarterly-job-12] Extracting pkg-1.16.3: .......... done ===> emboss-6.6.0_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of emboss-6.6.0_4 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by emboss-6.6.0_4 for building <snip> gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/acd' gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[8]: Nothing to be done for 'all-am'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' Making all in nucleus gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' Making all in emboss gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' Making all in acd gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' Making all in data gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' Making all in AAINDEX gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' Making all in CODONS gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' Making all in JASPAR_CNE gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' Making all in JASPAR_CORE gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' Making all in JASPAR_FAM gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' Making all in JASPAR_PBM gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' Making all in JASPAR_PBM_HLH gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' Making all in JASPAR_PBM_HOMEO gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' Making all in JASPAR_PHYLOFACTS gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' Making all in JASPAR_POLII gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' Making all in JASPAR_SPLICE gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' Making all in OBO gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' Making all in PRINTS gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' Making all in PROSITE gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' Making all in REBASE gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' Making all in TAXONOMY gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[9]: Nothing to be done for 'all-am'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' Making all in index gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' gmake[8]: Nothing to be done for 'all-am'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' Making all in test gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' Making all in data gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' Making all in embl gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' Making all in genbank gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' Making all in pir gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' Making all in swiss gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' Making all in swnew gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' Making all in testdb gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[8]: Nothing to be done for 'all-am'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' Making all in doc gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' Making all in manuals gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' Making all in programs gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' Making all in html gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html' Making all in text gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text' gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' gmake[9]: Nothing to be done for 'all-am'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' Making all in tutorials gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials' gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' gmake[8]: Nothing to be done for 'all-am'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' Making all in jemboss gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' Making all in images gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images' Making all in lib gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' Making all in axis gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis' gmake[9]: Nothing to be done for 'all'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis' gmake[9]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[9]: Nothing to be done for 'all-am'. gmake[9]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' Making all in resources gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' Making all in utils gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[8]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[8]: Nothing to be done for 'all-am'. gmake[8]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[7]: Nothing to be done for 'all-am'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' install -m 0644 /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/emboss.default.template /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS ====> Compressing man pages (compress-man) ===> Installing ldconfig configuration file =========================================================================== =======================<phase: package >============================ ===> Building package for emboss-6.6.0_4 =>> Killing timed out build after 7200 seconds
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