From owner-svn-ports-all@FreeBSD.ORG Tue May 12 08:58:15 2015 Return-Path: Delivered-To: svn-ports-all@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id C2590547; Tue, 12 May 2015 08:58:15 +0000 (UTC) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id A3A381D9E; Tue, 12 May 2015 08:58:15 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.9/8.14.9) with ESMTP id t4C8wF45032246; Tue, 12 May 2015 08:58:15 GMT (envelope-from wen@FreeBSD.org) Received: (from wen@localhost) by svn.freebsd.org (8.14.9/8.14.9/Submit) id t4C8wEMP032243; Tue, 12 May 2015 08:58:14 GMT (envelope-from wen@FreeBSD.org) Message-Id: <201505120858.t4C8wEMP032243@svn.freebsd.org> X-Authentication-Warning: svn.freebsd.org: wen set sender to wen@FreeBSD.org using -f From: Wen Heping Date: Tue, 12 May 2015 08:58:14 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r386129 - head/biology/libsbml X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.20 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 12 May 2015 08:58:16 -0000 Author: wen Date: Tue May 12 08:58:14 2015 New Revision: 386129 URL: https://svnweb.freebsd.org/changeset/ports/386129 Log: - Update to 5.11.4 Modified: head/biology/libsbml/Makefile head/biology/libsbml/distinfo head/biology/libsbml/pkg-plist Modified: head/biology/libsbml/Makefile ============================================================================== --- head/biology/libsbml/Makefile Tue May 12 08:57:23 2015 (r386128) +++ head/biology/libsbml/Makefile Tue May 12 08:58:14 2015 (r386129) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= libsbml -PORTVERSION= 5.11.0 +PORTVERSION= 5.11.4 CATEGORIES= biology devel MASTER_SITES= SF/sbml/${PORTNAME}/${PORTVERSION}/stable DISTNAME= libSBML-${PORTVERSION}-core-src @@ -39,6 +39,7 @@ post-patch: @${REINPLACE_CMD} -e \ 's|/usr/local/include|${LOCALBASE}/include| ; \ s|/usr/local/lib|${LOCALBASE}/lib| ; \ + s|$${CMAKE_INSTALL_LIBDIR}/pkgconfig|libdata/pkgconfig| ; \ /$${DOCUMENTATION_FILES}/s|^|#|' ${WRKSRC}/CMakeLists.txt post-install: Modified: head/biology/libsbml/distinfo ============================================================================== --- head/biology/libsbml/distinfo Tue May 12 08:57:23 2015 (r386128) +++ head/biology/libsbml/distinfo Tue May 12 08:58:14 2015 (r386129) @@ -1,2 +1,2 @@ -SHA256 (libSBML-5.11.0-core-src.tar.gz) = 67a2b7e32c4294e8cdc65b7a4bceecf83a6365c2df423c4f06c1a9b28346ae2a -SIZE (libSBML-5.11.0-core-src.tar.gz) = 12988833 +SHA256 (libSBML-5.11.4-core-src.tar.gz) = d70684c547ad748c9ac4ca3e7663e3a563f26f7dd874c9bd582e71c0b9e592e2 +SIZE (libSBML-5.11.4-core-src.tar.gz) = 13129455 Modified: head/biology/libsbml/pkg-plist ============================================================================== --- head/biology/libsbml/pkg-plist Tue May 12 08:57:23 2015 (r386128) +++ head/biology/libsbml/pkg-plist Tue May 12 08:58:14 2015 (r386129) @@ -201,7 +201,8 @@ include/sbml/xml/XercesTranscode.h lib/libsbml-static.a lib/libsbml.so lib/libsbml.so.5 -lib/libsbml.so.5.11.0 +lib/libsbml.so.5.11.4 +libdata/pkgconfig/libsbml.pc %%PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml.pth %%PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/_libsbml.so %%PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/libsbml.py @@ -331,6 +332,7 @@ lib/libsbml.so.5.11.0 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/getAllElementsWithNotes.java %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/inlineInitialAssignments.java %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/layout/CMakeLists.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/layout/SimpleLayoutConverter.java %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/layout/layout_example1.java %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/layout/layout_example1_L3.java %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printAnnotation.java @@ -402,6 +404,9 @@ lib/libsbml.so.5.11.0 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/unsetAnnotation.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/unsetNotes.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/validateSBML.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/php/createExampleSBML.php +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/php/echoSBML.php +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/php/validateSBML.php %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/addCVTerms.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/addCustomValidator.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/addModelHistory.py