From owner-svn-ports-head@freebsd.org Mon Mar 15 20:09:29 2021 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 894DA5ADDE3; Mon, 15 Mar 2021 20:09:29 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4DznZK3VQPz3sPt; Mon, 15 Mar 2021 20:09:29 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 6076516B0C; Mon, 15 Mar 2021 20:09:29 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 12FK9TI0031796; Mon, 15 Mar 2021 20:09:29 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 12FK9S4f031789; Mon, 15 Mar 2021 20:09:28 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <202103152009.12FK9S4f031789@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Mon, 15 Mar 2021 20:09:28 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r568501 - in head/biology: . generand X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: in head/biology: . generand X-SVN-Commit-Revision: 568501 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 15 Mar 2021 20:09:29 -0000 Author: jwb Date: Mon Mar 15 20:09:28 2021 New Revision: 568501 URL: https://svnweb.freebsd.org/changeset/ports/568501 Log: biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF format Generate random genomic data in FASTA/FASTQ, SAM, or VCF format, suitable for small academic examples or test inputs of arbitrary size. Output can be piped directly to programs or redirected to a file and edited to taste. Added: head/biology/generand/ head/biology/generand/Makefile (contents, props changed) head/biology/generand/distinfo (contents, props changed) head/biology/generand/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Mon Mar 15 19:58:59 2021 (r568500) +++ head/biology/Makefile Mon Mar 15 20:09:28 2021 (r568501) @@ -48,6 +48,7 @@ SUBDIR += gatk SUBDIR += gcta SUBDIR += gemma + SUBDIR += generand SUBDIR += gff2ps SUBDIR += gmap SUBDIR += gperiodic Added: head/biology/generand/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/generand/Makefile Mon Mar 15 20:09:28 2021 (r568501) @@ -0,0 +1,18 @@ +# $FreeBSD$ + +PORTNAME= generand +DISTVERSION= 0.1.1 +CATEGORIES= biology + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Generate random genomic data in FASTA/FASTQ, SAM, or VCF format + +LICENSE= BSD2CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +USE_GITHUB= yes +GH_ACCOUNT= auerlab + +PLIST_FILES= bin/generand man/man1/generand.1.gz + +.include Added: head/biology/generand/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/generand/distinfo Mon Mar 15 20:09:28 2021 (r568501) @@ -0,0 +1,3 @@ +TIMESTAMP = 1615760855 +SHA256 (auerlab-generand-0.1.1_GH0.tar.gz) = 5e1b8099a4f9704e0241be184a54b2fbe76f556f58bc743bfc6992971d52d038 +SIZE (auerlab-generand-0.1.1_GH0.tar.gz) = 6481 Added: head/biology/generand/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/generand/pkg-descr Mon Mar 15 20:09:28 2021 (r568501) @@ -0,0 +1,5 @@ +Generate random genomic data in FASTA/FASTQ, SAM, or VCF format, suitable for +small academic examples or test inputs of arbitrary size. Output can be piped +directly to programs or redirected to a file and edited to taste. + +WWW: https://github.com/auerlab/generand