Date: Fri, 14 Jul 2023 16:12:07 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 2b96a02432ae - main - biology/kallisto: Tag only for 64-bit architectures Message-ID: <202307141612.36EGC77K075690@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=2b96a02432aeacb3a5f477be3477b95f8bd9d2ca commit 2b96a02432aeacb3a5f477be3477b95f8bd9d2ca Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2023-07-14 16:10:49 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2023-07-14 16:12:06 +0000 biology/kallisto: Tag only for 64-bit architectures Also patch out -march=native Reported by: pkg-fallout --- biology/kallisto/Makefile | 4 ++++ biology/kallisto/files/patch-ext_bifrost_CMakeLists.txt | 11 +++++++++++ 2 files changed, 15 insertions(+) diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile index 42715d9abc88..ea7cb1a53596 100644 --- a/biology/kallisto/Makefile +++ b/biology/kallisto/Makefile @@ -1,6 +1,7 @@ PORTNAME= kallisto DISTVERSIONPREFIX= v DISTVERSION= 0.50.0 +PORTREVISION= 1 PORTEPOCH= 1 CATEGORIES= biology @@ -11,6 +12,9 @@ WWW= https://pachterlab.github.io/kallisto/about.html LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/license.txt +# Requires a 64-bit processor +ONLY_FOR_ARCHS= aarch64 amd64 powerpc64 powerpc64le riscv64 + LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/libaec \ libhts.so:biology/htslib diff --git a/biology/kallisto/files/patch-ext_bifrost_CMakeLists.txt b/biology/kallisto/files/patch-ext_bifrost_CMakeLists.txt new file mode 100644 index 000000000000..c4c22a5e0666 --- /dev/null +++ b/biology/kallisto/files/patch-ext_bifrost_CMakeLists.txt @@ -0,0 +1,11 @@ +--- ext/bifrost/CMakeLists.txt.orig 2023-07-14 14:27:24 UTC ++++ ext/bifrost/CMakeLists.txt +@@ -30,8 +30,6 @@ if(COMPILATION_ARCH MATCHES "OFF") + message("Disabling native architecture compilation (including AVX2)") + else(COMPILATION_ARCH MATCHES "OFF") + message("Compilation architecture: ${COMPILATION_ARCH}") +- set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -march=${COMPILATION_ARCH}") +- set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=${COMPILATION_ARCH}") + endif(COMPILATION_ARCH MATCHES "OFF") + + if(ENABLE_AVX2 MATCHES "OFF")
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