Date: Tue, 30 Jan 2018 20:10:53 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 103amd64-default][math/adept] Failed for adept-2.0.4 in build Message-ID: <201801302010.w0UKAraV060285@beefy6.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/math/adept/Makefile 458714 2018-01-11 07:17:33Z yuri $ Log URL: http://beefy6.nyi.freebsd.org/data/103amd64-default/460361/logs/adept-2.0.4.log Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=103amd64-default&build=460361 Log: =>> Building math/adept build started at Tue Jan 30 20:10:08 UTC 2018 port directory: /usr/ports/math/adept package name: adept-2.0.4 building for: FreeBSD 103amd64-default-job-02 10.3-RELEASE-p26 FreeBSD 10.3-RELEASE-p26 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/math/adept/Makefile 458714 2018-01-11 07:17:33Z yuri $ Poudriere version: 3.2.4-22-g5aece630 Host OSVERSION: 1200054 Jail OSVERSION: 1003000 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1003000 UNAME_v=FreeBSD 10.3-RELEASE-p26 UNAME_r=10.3-RELEASE-p26 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/103amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk OLDPWD=/usr/local/poudriere/data/.m/103amd64-default/ref/.p P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS PWD=/usr/local/poudriere/data/.m/103amd64-default/ref/.p/pool MASTERNAME=103amd64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root P_PYTHON_MAJOR_VER=2 POUDRIERE_VERSION=3.2.4-22-g5aece630 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for adept-2.0.4: PDFTEXDOCS=off: Build and install PDF documentation from LaTeX sources ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --disable-static --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/math/adept/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/adept/work HOME=/wrkdirs/usr/ports/math/adept/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/adept/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/math/adept/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/adept/work HOME=/wrkdirs/usr/ports/math/adept/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/adept/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP ="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -L/usr/local/lib -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" PDFTEXDOCS="@comment " NO_PDFTEXDOCS="" OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/adept" EXAMPLESDIR="share/examples/adept" DATADIR="share/adept" WWWDIR="www/adept" ETCDIR="etc/adept" --End PLIST_SUB-- --SUB_LIST-- PDFTEXDOCS="@comment " NO_PDFTEXDOCS="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/adept DOCSDIR=/usr/local/share/doc/adept EXAMPLESDIR=/usr/local/share/examples/adept WWWDIR=/usr/local/www/adept ETCDIR=/usr/local/etc/adept --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=amd64 CONFIGURE_MAX_CMD_LEN=262144 HAVE_COMPAT_IA32_KERN=YES OPSYS=FreeBSD OSREL=10.3 OSVERSION=1003000 PYTHONBASE=/usr/local UID=0 _OSRELEASE=10.3-RELEASE-p26 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited sbsize (bytes, -b) unlimited pseudo-terminals (-p) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License APACHE20 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> adept-2.0.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.4.txz [103amd64-default-job-02] Installing pkg-1.10.4... [103amd64-default-job-02] Extracting pkg-1.10.4: .......... done ===> adept-2.0.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of adept-2.0.4 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by adept-2.0.4 for building =========================================================================== =======================<phase: checksum >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by adept-2.0.4 for building => SHA256 Checksum OK for adept-2.0.4.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by adept-2.0.4 for building ===> Extracting for adept-2.0.4 => SHA256 Checksum OK for adept-2.0.4.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for adept-2.0.4 ===> Applying FreeBSD patches for adept-2.0.4 =========================================================================== =======================<phase: build-depends >============================ ===> adept-2.0.4 depends on executable: autoconf-2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_1.txz [103amd64-default-job-02] Installing autoconf-2.69_1... [103amd64-default-job-02] `-- Installing autoconf-wrapper-20131203... [103amd64-default-job-02] `-- Extracting autoconf-wrapper-20131203: .......... done [103amd64-default-job-02] `-- Installing indexinfo-0.3.1... [103amd64-default-job-02] `-- Extracting indexinfo-0.3.1: .... done [103amd64-default-job-02] `-- Installing m4-1.4.18,1... [103amd64-default-job-02] `-- Extracting m4-1.4.18,1: .......... done [103amd64-default-job-02] `-- Installing perl5-5.24.3... [103amd64-default-job-02] `-- Extracting perl5-5.24.3: .......... done [103amd64-default-job-02] Extracting autoconf-2.69_1: .......... done Message from perl5-5.24.3: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> adept-2.0.4 depends on executable: autoconf-2.69 - found ===> Returning to build of adept-2.0.4 ===> adept-2.0.4 depends on executable: autoheader-2.69 - found ===> adept-2.0.4 depends on executable: autoreconf-2.69 - found ===> adept-2.0.4 depends on executable: aclocal-1.15 - not found ===> Installing existing package /packages/All/automake-1.15.1.txz [103amd64-default-job-02] Installing automake-1.15.1... [103amd64-default-job-02] `-- Installing automake-wrapper-20131203... [103amd64-default-job-02] `-- Extracting automake-wrapper-20131203: ...... done [103amd64-default-job-02] Extracting automake-1.15.1: .......... done ===> adept-2.0.4 depends on executable: aclocal-1.15 - found ===> Returning to build of adept-2.0.4 ===> adept-2.0.4 depends on executable: automake-1.15 - found <snip> checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking the archiver (/usr/local/bin/ar) interface... ar checking build system type... amd64-portbld-freebsd10.3 checking host system type... amd64-portbld-freebsd10.3 checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert amd64-portbld-freebsd10.3 file names to amd64-portbld-freebsd10.3 format... func_convert_file_noop checking how to convert amd64-portbld-freebsd10.3 file names to toolchain format... func_convert_file_noop checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd10.3 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd10.3 ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran6 option to produce PIC... -fPIC checking if gfortran6 PIC flag -fPIC works... yes checking if gfortran6 static flag -static works... yes checking if gfortran6 supports -c -o file.o... yes checking if gfortran6 supports -c -o file.o... (cached) yes checking whether the gfortran6 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd10.3 ld.so checking how to hardcode library paths into programs... immediate checking for sys/time.h... (cached) yes checking for gettimeofday... (cached) yes checking for pow... yes checking for sqrt... yes checking for c++ option to support OpenMP... unsupported checking how to get verbose linking output from gfortran6... -v checking for Fortran 77 libraries of gfortran6... -L/usr/local/lib/gcc6 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc6/gcc/x86_64-portbld-freebsd10.3/6.4.0 -L/usr/local/lib/gcc6/gcc/x86_64-portbld-freebsd10.3/6.4.0/../../../../../x86_64-portbld-freebsd10.3/lib -L/usr/local/lib/gcc6/gcc/x86_64-portbld-freebsd10.3/6.4.0/../../.. -lgfortran -lm -lssp_nonshared -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking if sgemm_ is being linked in already... no checking for sgemm_ in -lopenblas... yes checking for cheev_... yes checking whether cblas.h is from OpenBLAS... no checking for gsl_multimin_fdfminimizer_alloc in -lgsl... no checking adolc/adolc.h usability... no checking adolc/adolc.h presence... no checking for adolc/adolc.h... no checking for tapestats in -ladolc... no checking whether Sacado is installed... no checking cppad/cppad.hpp usability... no checking cppad/cppad.hpp presence... no checking for cppad/cppad.hpp... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating makefile_include config.status: creating adept/Makefile config.status: creating include/Makefile config.status: creating benchmark/Makefile config.status: creating config.h config.status: creating config_platform_independent.h config.status: executing depfiles commands config.status: executing libtool commands configure: ********************* Summary ************************************** configure: CXX = c++ configure: CPPFLAGS = configure: CXXFLAGS = -O2 -pipe -fstack-protector -fno-strict-aliasing configure: LDFLAGS = -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -L/usr/local/lib -fstack-protector configure: LIBS = -lopenblas configure: Typing "make; make install" will install Adept header files in ${prefix}/include configure: and the static and shared libraries as ${exec_prefix}/lib/libadept.*, where configure: prefix=/usr/local configure: ********************* Libraries used by Adept ********************** configure: BLAS (Basic Linear Algebra Subprograms) will be used: BLAS_LIBS = -lopenblas configure: LAPACK (Linear Algebra Package) will be used: LAPACK_LIBS = configure: ********************* Libraries used by test programs ************** configure: GNU Scientific Library (GSL) not found; Adept will compile all the configure: example programs except test/test_gsl_interface. configure: ********************* Benchmark program **************************** configure: The benchmarking program, "benchmark/advection_benchmark", will be configure: compiled with support for these automatic differentiation libraries: configure: Adept: yes configure: ADOLC: no configure: CppAD: no configure: Sacado: no configure: ********************* Top tips ************************************* configure: To use a higher than default optimization level, call this configure configure: script with something like: ./configure "CXXFLAGS=-g -O3" configure: If you have libraries in non-standard locations, specify their location configure: by calling this script with something like: configure: ./configure CPPFLAGS=-I/local/include LDFLAGS="-L/local/lib -Wl,-rpath,/local/lib" configure: The rpath argument is especially useful for locating the BLAS and LAPACK configure: libraries if they are in non-standard locations, so that executables configure: built with Adept do not need to use the LD_LIBRARY_PATH environment configure: variable to specify their locations at run-time. configure: ******************************************************************** =========================================================================== =======================<phase: build >============================ ===> Building for adept-2.0.4 gmake[1]: Entering directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.4' gmake all-recursive gmake[2]: Entering directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.4' Making all in adept gmake[3]: Entering directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.4/adept' /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT libadept_la-Array.lo -MD -MP -MF .deps/libadept_la-Array.Tpo -c -o libadept_la-Array.lo `test -f 'Array.cpp' || echo './'`Array.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT libadept_la-Array.lo -MD -MP -MF .deps/libadept_la-Array.Tpo -c Array.cpp -fPIC -DPIC -o .libs/libadept_la-Array.o In file included from Array.cpp:11: In file included from ../include/adept/Array.h:29: In file included from ../include/adept/Storage.h:26: In file included from ../include/adept/Stack.h:41: ./include/adept/traits.h:77:32: warning: unknown warning group '-Wpragmas', ignored [-Wunknown-pragmas] #pragma GCC diagnostic ignored "-Wpragmas" ^ ./include/adept/traits.h:78:32: warning: unknown warning group '-Wunused-local-typedefs', ignored [-Wunknown-pragmas] #pragma GCC diagnostic ignored "-Wunused-local-typedefs" ^ ./include/adept/traits.h:79:32: warning: unknown warning group '-Wpragmas', ignored [-Wunknown-pragmas] #pragma GCC diagnostic warning "-Wpragmas" ^ In file included from Array.cpp:11: In file included from ../include/adept/Array.h:29: In file included from ../include/adept/Storage.h:27: ./include/adept/Packet.h:280:37: error: use of undeclared identifier '_mm_undefined_ps' __m128 shuftmp= _mm_movehl_ps(_mm_undefined_ps(), ^ ./include/adept/Packet.h:286:37: error: use of undeclared identifier '_mm_undefined_ps' __m128 shuftmp= _mm_movehl_ps(_mm_undefined_ps(), ^ ./include/adept/Packet.h:292:37: error: use of undeclared identifier '_mm_undefined_ps' __m128 shuftmp= _mm_movehl_ps(_mm_undefined_ps(), ^ ./include/adept/Packet.h:298:37: error: use of undeclared identifier '_mm_undefined_ps' __m128 shuftmp= _mm_movehl_ps(_mm_undefined_ps(), ^ 3 warnings and 4 errors generated. gmake[3]: *** [Makefile:476: libadept_la-Array.lo] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.4/adept' gmake[2]: *** [Makefile:428: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.4' gmake[1]: *** [Makefile:350: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.4' *** Error code 1 Stop. make: stopped in /usr/ports/math/adept
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