Date: Wed, 13 Jun 2001 10:35:28 +0200 (SAST) From: johann@egenetics.com To: FreeBSD-gnats-submit@freebsd.org Subject: ports/28119: Port update: biology/emboss (MAINTAINER) Message-ID: <200106130835.f5D8ZSG29239@shuffle.egenetics.com>
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>Number: 28119 >Category: ports >Synopsis: Port update: biology/emboss (MAINTAINER) >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Wed Jun 13 01:40:00 PDT 2001 >Closed-Date: >Last-Modified: >Originator: Johann Visagie >Release: FreeBSD 5.0-CURRENT i386 >Organization: Electric Genetics >Environment: >Description: - Update the EMBOSS suite (biology/emboss) to 1.13.3 - File removed: pkg_plist.embassy (added by mistake in my laste update - sorry!) >How-To-Repeat: >Fix: diff -ruN emboss.bak/Makefile emboss/Makefile --- emboss.bak/Makefile Wed Jun 13 10:33:21 2001 +++ emboss/Makefile Tue Jun 12 14:34:18 2001 @@ -6,7 +6,7 @@ # PORTNAME= emboss -PORTVERSION= 1.13.1 +PORTVERSION= 1.13.3 CATEGORIES= biology MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \ ftp://ftp.no.embnet.org/pub/EMBOSS/ \ diff -ruN emboss.bak/distinfo emboss/distinfo --- emboss.bak/distinfo Wed Jun 13 10:33:21 2001 +++ emboss/distinfo Tue Jun 12 15:16:36 2001 @@ -1,5 +1,5 @@ -MD5 (emboss/EMBOSS-1.13.1.tar.gz) = 313440f1c5f41cb8615f01dfba445358 +MD5 (emboss/EMBOSS-1.13.3.tar.gz) = ef3ebd34154abf04293f58bd9974267b MD5 (emboss/EMNU-1.0.4.tar.gz) = 6ebdf128e1b531911ff97d2b8d6a59d8 -MD5 (emboss/MSE-0.0.4.tar.gz) = 8b5e9cb6919be5cae1ea977ea7327e79 -MD5 (emboss/PHYLIP-3.573c.tar.gz) = c001525bfbedc8903da34d859eeedf0c -MD5 (emboss/TOPO-0.1.tar.gz) = c3ea9c55af1d48644f9096ac793cc5a1 +MD5 (emboss/MSE-0.0.4.tar.gz) = d671afc3a3cc211f038f7752fb09c8f6 +MD5 (emboss/PHYLIP-3.573c.tar.gz) = 3539ae2d0753a6e95e60d59d0177c305 +MD5 (emboss/TOPO-0.1.tar.gz) = 8666694007cf866f5cdfe2aba7c01e3b diff -ruN emboss.bak/pkg-plist emboss/pkg-plist --- emboss.bak/pkg-plist Wed Jun 13 10:33:21 2001 +++ emboss/pkg-plist Tue Jun 12 17:57:55 2001 @@ -75,6 +75,7 @@ bin/cpgplot bin/cpgreport bin/cusp +bin/cutgextract bin/cutseq bin/dan bin/dbiblast @@ -237,6 +238,7 @@ share/EMBOSS/acd/cpgplot.acd share/EMBOSS/acd/cpgreport.acd share/EMBOSS/acd/cusp.acd +share/EMBOSS/acd/cutgextract.acd share/EMBOSS/acd/cutseq.acd share/EMBOSS/acd/dan.acd share/EMBOSS/acd/dbiblast.acd @@ -842,9 +844,9 @@ share/doc/EMBOSS/programs/html/ekitsch.html share/doc/EMBOSS/programs/html/emboss_icon.gif share/doc/EMBOSS/programs/html/embossdata.html -share/doc/EMBOSS/programs/html/embossversion.html share/doc/EMBOSS/programs/html/emix.html share/doc/EMBOSS/programs/html/emma.html +share/doc/EMBOSS/programs/html/emnu.html share/doc/EMBOSS/programs/html/emowse.html share/doc/EMBOSS/programs/html/eneighbor.html share/doc/EMBOSS/programs/html/entret.html @@ -971,7 +973,6 @@ share/doc/EMBOSS/programs/html/restover.html share/doc/EMBOSS/programs/html/restrict.html share/doc/EMBOSS/programs/html/revseq.html -share/doc/EMBOSS/programs/html/scopalign.html share/doc/EMBOSS/programs/html/scope.html share/doc/EMBOSS/programs/html/seealso.html share/doc/EMBOSS/programs/html/seqboot.html @@ -981,7 +982,6 @@ share/doc/EMBOSS/programs/html/seqretfeat.html share/doc/EMBOSS/programs/html/seqretset.html share/doc/EMBOSS/programs/html/seqretsplit.html -share/doc/EMBOSS/programs/html/showalign.html share/doc/EMBOSS/programs/html/showdb.html share/doc/EMBOSS/programs/html/showfeat.html share/doc/EMBOSS/programs/html/showorf.html @@ -990,7 +990,6 @@ share/doc/EMBOSS/programs/html/sigcleave.html share/doc/EMBOSS/programs/html/silent.html share/doc/EMBOSS/programs/html/splitter.html -share/doc/EMBOSS/programs/html/stamps.html share/doc/EMBOSS/programs/html/stretcher.html share/doc/EMBOSS/programs/html/stssearch.html share/doc/EMBOSS/programs/html/supermatcher.html @@ -1086,9 +1085,9 @@ share/doc/EMBOSS/programs/text/einverted.txt share/doc/EMBOSS/programs/text/ekitsch.txt share/doc/EMBOSS/programs/text/embossdata.txt -share/doc/EMBOSS/programs/text/embossversion.txt share/doc/EMBOSS/programs/text/emix.txt share/doc/EMBOSS/programs/text/emma.txt +share/doc/EMBOSS/programs/text/emnu.txt share/doc/EMBOSS/programs/text/emowse.txt share/doc/EMBOSS/programs/text/eneighbor.txt share/doc/EMBOSS/programs/text/entret.txt @@ -1175,7 +1174,6 @@ share/doc/EMBOSS/programs/text/restover.txt share/doc/EMBOSS/programs/text/restrict.txt share/doc/EMBOSS/programs/text/revseq.txt -share/doc/EMBOSS/programs/text/scopalign.txt share/doc/EMBOSS/programs/text/scope.txt share/doc/EMBOSS/programs/text/seealso.txt share/doc/EMBOSS/programs/text/seqboot.txt @@ -1185,7 +1183,6 @@ share/doc/EMBOSS/programs/text/seqretfeat.txt share/doc/EMBOSS/programs/text/seqretset.txt share/doc/EMBOSS/programs/text/seqretsplit.txt -share/doc/EMBOSS/programs/text/showalign.txt share/doc/EMBOSS/programs/text/showdb.txt share/doc/EMBOSS/programs/text/showfeat.txt share/doc/EMBOSS/programs/text/showorf.txt @@ -1194,7 +1191,6 @@ share/doc/EMBOSS/programs/text/sigcleave.txt share/doc/EMBOSS/programs/text/silent.txt share/doc/EMBOSS/programs/text/splitter.txt -share/doc/EMBOSS/programs/text/stamps.txt share/doc/EMBOSS/programs/text/stretcher.txt share/doc/EMBOSS/programs/text/stssearch.txt share/doc/EMBOSS/programs/text/supermatcher.txt diff -ruN emboss.bak/pkg-plist.embassy emboss/pkg-plist.embassy --- emboss.bak/pkg-plist.embassy Wed Jun 13 10:33:21 2001 +++ emboss/pkg-plist.embassy Thu Jan 1 02:00:00 1970 @@ -1,58 +0,0 @@ -%%PLIST_EMNU%%bin/emnu -%%PLIST_EMNU%%share/EMBOSS/acd/emnu.acd -%%PLIST_MSE%%bin/mse -%%PLIST_MSE%%lib/libckit.a -%%PLIST_MSE%%lib/libckit.la -%%PLIST_MSE%%lib/libckit.so -%%PLIST_MSE%%lib/libckit.so.1 -%%PLIST_MSE%%share/EMBOSS/acd/mse.acd -%%PLIST_PHYLIP%%bin/eclique -%%PLIST_PHYLIP%%bin/econsense -%%PLIST_PHYLIP%%bin/econtml -%%PLIST_PHYLIP%%bin/econtrast -%%PLIST_PHYLIP%%bin/ednacomp -%%PLIST_PHYLIP%%bin/ednadist -%%PLIST_PHYLIP%%bin/ednainvar -%%PLIST_PHYLIP%%bin/ednaml -%%PLIST_PHYLIP%%bin/ednamlk -%%PLIST_PHYLIP%%bin/ednapars -%%PLIST_PHYLIP%%bin/ednapenny -%%PLIST_PHYLIP%%bin/edollop -%%PLIST_PHYLIP%%bin/edolpenny -%%PLIST_PHYLIP%%bin/efactor -%%PLIST_PHYLIP%%bin/efitch -%%PLIST_PHYLIP%%bin/egendist -%%PLIST_PHYLIP%%bin/ekitsch -%%PLIST_PHYLIP%%bin/emix -%%PLIST_PHYLIP%%bin/eneighbor -%%PLIST_PHYLIP%%bin/epenny -%%PLIST_PHYLIP%%bin/eprotdist -%%PLIST_PHYLIP%%bin/eprotpars -%%PLIST_PHYLIP%%bin/erestml -%%PLIST_PHYLIP%%bin/eseqboot -%%PLIST_PHYLIP%%share/EMBOSS/acd/eclique.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/econsense.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/econtml.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/econtrast.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/ednacomp.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/ednadist.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/ednainvar.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/ednaml.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/ednamlk.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/ednapars.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/ednapenny.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/edollop.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/edolpenny.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/efactor.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/efitch.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/egendist.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/ekitsch.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/emix.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/eneighbor.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/epenny.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/eprotdist.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/eprotpars.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/erestml.acd -%%PLIST_PHYLIP%%share/EMBOSS/acd/eseqboot.acd -%%PLIST_TOPO%%bin/topo -%%PLIST_TOPO%%share/EMBOSS/acd/topo.acd >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message
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