From owner-svn-ports-all@freebsd.org Wed Jul 18 05:28:25 2018 Return-Path: Delivered-To: svn-ports-all@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id C944E1035CD6; Wed, 18 Jul 2018 05:28:25 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 755FE89629; Wed, 18 Jul 2018 05:28:25 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4CF4215EB2; Wed, 18 Jul 2018 05:28:25 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id w6I5SP0d038885; Wed, 18 Jul 2018 05:28:25 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id w6I5SOlu038884; Wed, 18 Jul 2018 05:28:24 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <201807180528.w6I5SOlu038884@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Wed, 18 Jul 2018 05:28:24 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r474834 - head/science/libghemical X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: head/science/libghemical X-SVN-Commit-Revision: 474834 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 18 Jul 2018 05:28:26 -0000 Author: yuri Date: Wed Jul 18 05:28:24 2018 New Revision: 474834 URL: https://svnweb.freebsd.org/changeset/ports/474834 Log: science/libghemical: Remove BROKEN/DEPRECATED labels The main cause of the breakage was a libary linkage problem in science/mpqc which is now fixed. Other port changes: * Add LICENSE/LICENSE_FILE * Add missing items to LIB_DEPENDS * Add workaround for the problem that configure fails due to the libgcc.so mismatch. By using CONFIGURE_ENV, preload libgcc.so from the gcc package. * Update WWW Modified: head/science/libghemical/Makefile head/science/libghemical/pkg-descr Modified: head/science/libghemical/Makefile ============================================================================== --- head/science/libghemical/Makefile Wed Jul 18 03:15:30 2018 (r474833) +++ head/science/libghemical/Makefile Wed Jul 18 05:28:24 2018 (r474834) @@ -11,20 +11,24 @@ MASTER_SITES= http://bioinformatics.org/ghemical/downl MAINTAINER= yuri@FreeBSD.org COMMENT= Support libraries of science/ghemical port -BROKEN= fails to configure -DEPRECATED= Broken for more than 5 months -EXPIRATION_DATE= 2018-08-20 +LICENSE= GPLv2 +LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= obabel:science/openbabel \ intltool-update:textproc/intltool \ ld:devel/binutils -LIB_DEPENDS= libmpqc.so:science/mpqc \ - libf2c.so:lang/f2c +LIB_DEPENDS= libblas.so:math/blas \ + libint.so:science/libint \ + libf2c.so:lang/f2c \ + liblapack.so:math/lapack \ + libmpqc.so:science/mpqc USES= fortran gettext gmake pathfix pkgconfig libtool USE_GL= gl GNU_CONFIGURE= yes USE_LDCONFIG= yes + +CONFIGURE_ENV= LD_PRELOAD=${LOCALBASE}/lib/gcc6/libgcc_s.so # workaround: otherwise configure fails CONFIGURE_ARGS+= --enable-mpqc CPPFLAGS+= -I${LOCALBASE}/include Modified: head/science/libghemical/pkg-descr ============================================================================== --- head/science/libghemical/pkg-descr Wed Jul 18 03:15:30 2018 (r474833) +++ head/science/libghemical/pkg-descr Wed Jul 18 05:28:24 2018 (r474834) @@ -1,3 +1,3 @@ libghemical is a support library packages for biology/ghemical -WWW: http://www.uku.fi/~thassine/projects/ghemical/ +WWW: https://www.bioinformatics.org/ghemical/ghemical/index.html