Date: Tue, 22 May 2018 22:55:18 +0000 (UTC) From: Joseph Mingrone <jrm@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r470664 - head/biology/hyphy Message-ID: <201805222255.w4MMtIXs097905@repo.freebsd.org>
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Author: jrm Date: Tue May 22 22:55:18 2018 New Revision: 470664 URL: https://svnweb.freebsd.org/changeset/ports/470664 Log: biology/hyphy: Update to version 2.3.13 Modified: head/biology/hyphy/Makefile (contents, props changed) head/biology/hyphy/distinfo (contents, props changed) head/biology/hyphy/pkg-plist (contents, props changed) Modified: head/biology/hyphy/Makefile ============================================================================== --- head/biology/hyphy/Makefile Tue May 22 22:41:57 2018 (r470663) +++ head/biology/hyphy/Makefile Tue May 22 22:55:18 2018 (r470664) @@ -1,8 +1,7 @@ # $FreeBSD$ PORTNAME= hyphy -DISTVERSION= 2.3.12 -PORTREVISION= 1 +DISTVERSION= 2.3.13 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org Modified: head/biology/hyphy/distinfo ============================================================================== --- head/biology/hyphy/distinfo Tue May 22 22:41:57 2018 (r470663) +++ head/biology/hyphy/distinfo Tue May 22 22:55:18 2018 (r470664) @@ -1,3 +1,3 @@ -TIMESTAMP = 1526314925 -SHA256 (veg-hyphy-2.3.12_GH0.tar.gz) = e2378a5130670d9440103b207e6b0fdb87e3eb163f55509d11a6876161072fed -SIZE (veg-hyphy-2.3.12_GH0.tar.gz) = 7900819 +TIMESTAMP = 1527024059 +SHA256 (veg-hyphy-2.3.13_GH0.tar.gz) = 29b72574302c98d38a92d5316b9283caa80a54c3e74c5e278c5bc9ae3d3df499 +SIZE (veg-hyphy-2.3.13_GH0.tar.gz) = 7910770 Modified: head/biology/hyphy/pkg-plist ============================================================================== --- head/biology/hyphy/pkg-plist Tue May 22 22:41:57 2018 (r470663) +++ head/biology/hyphy/pkg-plist Tue May 22 22:55:18 2018 (r470664) @@ -257,6 +257,7 @@ lib/hyphy/TemplateBatchFiles/Samplers/srs.ibf lib/hyphy/TemplateBatchFiles/SandNSAmbigs.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf +lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL-contrast.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf @@ -265,10 +266,13 @@ lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-G lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-SRV.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf +lib/hyphy/TemplateBatchFiles/SelectionAnalyses/Simulators/BUSTED.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf +lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf +lib/hyphy/TemplateBatchFiles/SelectionAnalyses/testers/FitModel.bf lib/hyphy/TemplateBatchFiles/SelectionLRT.bf lib/hyphy/TemplateBatchFiles/SeqAlignShared.ibf lib/hyphy/TemplateBatchFiles/SeqAlignment.bf @@ -477,9 +481,11 @@ lib/hyphy/TemplateBatchFiles/libv3/models/DNA/HKY85.bf lib/hyphy/TemplateBatchFiles/libv3/models/DNA/JC69.bf lib/hyphy/TemplateBatchFiles/libv3/models/binary.bf lib/hyphy/TemplateBatchFiles/libv3/models/binary/charbinary.bf +lib/hyphy/TemplateBatchFiles/libv3/models/binary/empirical.bf lib/hyphy/TemplateBatchFiles/libv3/models/codon.bf lib/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf +lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf lib/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf lib/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf lib/hyphy/TemplateBatchFiles/libv3/models/parameters.bf
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