From owner-freebsd-ports Sun Mar 10 16:31: 3 2002 Delivered-To: freebsd-ports@hub.freebsd.org Received: from freefall.freebsd.org (freefall.FreeBSD.org [216.136.204.21]) by hub.freebsd.org (Postfix) with ESMTP id 2102137B402 for ; Sun, 10 Mar 2002 16:30:01 -0800 (PST) Received: (from gnats@localhost) by freefall.freebsd.org (8.11.6/8.11.6) id g2B0U1K99486; Sun, 10 Mar 2002 16:30:01 -0800 (PST) (envelope-from gnats) Received: from gateway.biolateral.com.au (yellow.biolateral.com.au [129.78.217.60]) by hub.freebsd.org (Postfix) with ESMTP id 499DB37B405 for ; Sun, 10 Mar 2002 16:24:21 -0800 (PST) Received: (from chuynh@localhost) by gateway.biolateral.com.au (8.11.6/8.11.6) id g2B0Z9H06539; Mon, 11 Mar 2002 11:35:09 +1100 (EST) (envelope-from chuynh) Message-Id: <200203110035.g2B0Z9H06539@gateway.biolateral.com.au> Date: Mon, 11 Mar 2002 11:35:09 +1100 (EST) From: Camson Huynh Reply-To: Camson Huynh To: FreeBSD-gnats-submit@freebsd.org X-Send-Pr-Version: 3.113 Subject: ports/35753: New Port: biology/act Sender: owner-freebsd-ports@FreeBSD.ORG Precedence: bulk List-ID: List-Archive: (Web Archive) List-Help: (List Instructions) List-Subscribe: List-Unsubscribe: X-Loop: FreeBSD.org >Number: 35753 >Category: ports >Synopsis: New Port: biology/act >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Sun Mar 10 16:30:01 PST 2002 >Closed-Date: >Last-Modified: >Originator: Camson Huynh >Release: FreeBSD 4.5-STABLE i386 >Organization: Biolateral Pty Ltd >Environment: System: FreeBSD oasis.bio 4.5-STABLE FreeBSD 4.5-STABLE #0: Mon Mar 4 12:18:52 EST 2002 root@oasis.bio:/usr/obj/usr/src/sys/OASIS i386 >Description: ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based on Artemis. In common with Artemis, ACT is written in Java and runs on UNIX, GNU/Linux, Macintosh and MS Windows systems. It can read complete EMBL and GENBANK entries or sequence in FASTA or raw format. Extra sequence features can be in EMBL, GENBANK or GFF format. ACT is distributed under the same license as Artemis. The sequence comparison displayed by ACT is usually the result of a blastn or tblastx search that has been processed by MSPcrunch. MSPcrunch must be run with the -d flag for the output to be usable by ACT. WWW: http://www.sanger.ac.uk/Software/Act/manual >How-To-Repeat: >Fix: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # act # act/pkg-descr # act/pkg-comment # act/distinfo # act/Makefile # act/pkg-plist # echo c - act mkdir -p act > /dev/null 2>&1 echo x - act/pkg-descr sed 's/^X//' >act/pkg-descr << 'END-of-act/pkg-descr' XACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based on XArtemis. In common with Artemis, ACT is written in Java and runs on UNIX, XGNU/Linux, Macintosh and MS Windows systems. It can read complete EMBL Xand GENBANK entries or sequence in FASTA or raw format. Extra sequence Xfeatures can be in EMBL, GENBANK or GFF format. ACT is distributed under the Xsame license as Artemis. X XThe sequence comparison displayed by ACT is usually the result of a blastn or Xtblastx search that has been processed by MSPcrunch. MSPcrunch must be run Xwith the -d flag for the output to be usable by ACT. X XWWW: http://www.sanger.ac.uk/Software/Act/manual END-of-act/pkg-descr echo x - act/pkg-comment sed 's/^X//' >act/pkg-comment << 'END-of-act/pkg-comment' XA DNA sequence comparison viewer based on Artemis END-of-act/pkg-comment echo x - act/distinfo sed 's/^X//' >act/distinfo << 'END-of-act/distinfo' XMD5 (act_compiled_v1.tar.gz) = 30e263c6507007d866a24b59c0767d77 END-of-act/distinfo echo x - act/Makefile sed 's/^X//' >act/Makefile << 'END-of-act/Makefile' X# New ports collection makefile for: artemis X# Date created: 11 Mar 2002 X# Whom: chuynh@bilateral.com.au X# X# $FreeBSD$ X# X XPORTNAME= act XPORTVERSION= 1.0 XCATEGORIES= biology XMASTER_SITES= http://www.sanger.ac.uk/Software/Act/v1/ XDISTNAME= act_compiled_v1 X XMAINTAINER= chuynh@biolateral.com.au X XRUN_DEPENDS= ${JAVA_COMMAND}:${PORTSDIR}/java/jdk13 X XWRKSRC= ${WRKDIR}/${PORTNAME} X XJDK_VERSION= 1.3.1 XJDK_DIR= ${PREFIX}/jdk${JDK_VERSION} XJAVA_COMMAND= ${JDK_DIR}/bin/java X XNO_BUILD= yes X Xdo-install: X @${MKDIR} ${PREFIX}/${PORTNAME}-${PORTVERSION} X @${TAR} -C ${WRKSRC} -cf- . | ${TAR} -C ${PREFIX}/${PORTNAME}-${PORTVERSION} -xpf- X @${LN} -s ${PREFIX}/${PORTNAME}-${PORTVERSION}/act ${PREFIX}/bin/act X XPLIST_SUB= PORTVERSION="${PORTVERSION}" X X.include END-of-act/Makefile echo x - act/pkg-plist sed 's/^X//' >act/pkg-plist << 'END-of-act/pkg-plist' Xact-1.0/CVS/Root Xact-1.0/CVS/Repository Xact-1.0/CVS/Entries Xact-1.0/.cvsignore Xact-1.0/AppGlobal.java Xact-1.0/Dad.java Xact-1.0/Makefile Xact-1.0/act Xact-1.0/META-INF/CVS/Root Xact-1.0/META-INF/CVS/Repository Xact-1.0/META-INF/CVS/Entries Xact-1.0/META-INF/MANIFEST.MF Xact-1.0/uk/CVS/Root Xact-1.0/uk/CVS/Repository Xact-1.0/uk/CVS/Entries Xact-1.0/uk/ac/CVS/Root Xact-1.0/uk/ac/CVS/Repository Xact-1.0/uk/ac/CVS/Entries Xact-1.0/uk/ac/sanger/CVS/Root Xact-1.0/uk/ac/sanger/CVS/Repository Xact-1.0/uk/ac/sanger/CVS/Entries Xact-1.0/uk/ac/sanger/pathogens/CVS/Root Xact-1.0/uk/ac/sanger/pathogens/CVS/Repository Xact-1.0/uk/ac/sanger/pathogens/CVS/Entries Xact-1.0/uk/ac/sanger/pathogens/Document.java Xact-1.0/uk/ac/sanger/pathogens/FastVector.java Xact-1.0/uk/ac/sanger/pathogens/FileDocument.java Xact-1.0/uk/ac/sanger/pathogens/FileProgressDocument.java Xact-1.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.java Xact-1.0/uk/ac/sanger/pathogens/InputStreamProgressListener.java Xact-1.0/uk/ac/sanger/pathogens/OutOfRangeException.java Xact-1.0/uk/ac/sanger/pathogens/ProgressInputStream.java Xact-1.0/uk/ac/sanger/pathogens/ReadOnlyException.java Xact-1.0/uk/ac/sanger/pathogens/StringVector.java Xact-1.0/uk/ac/sanger/pathogens/URLDocument.java Xact-1.0/uk/ac/sanger/pathogens/embl/CVS/Root Xact-1.0/uk/ac/sanger/pathogens/embl/CVS/Repository Xact-1.0/uk/ac/sanger/pathogens/embl/CVS/Entries Xact-1.0/uk/ac/sanger/pathogens/embl/BetweenRange.java Xact-1.0/uk/ac/sanger/pathogens/embl/ComparableFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/CorbaEntry.java Xact-1.0/uk/ac/sanger/pathogens/embl/CorbaFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/CorbaSequence.java Xact-1.0/uk/ac/sanger/pathogens/embl/DateStampFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntry.java Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.java Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.java Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/EMBLObject.java Xact-1.0/uk/ac/sanger/pathogens/embl/Entry.java Xact-1.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.java Xact-1.0/uk/ac/sanger/pathogens/embl/EmblMisc.java Xact-1.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.java Xact-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaEntry.java Xact-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaSequence.java Xact-1.0/uk/ac/sanger/pathogens/embl/EntryInformation.java Xact-1.0/uk/ac/sanger/pathogens/embl/EntryInformationException.java Xact-1.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.java Xact-1.0/uk/ac/sanger/pathogens/embl/Feature.java Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureComparator.java Xact-1.0/uk/ac/sanger/pathogens/embl/Key.java Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.java Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureHeader.java Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureTable.java Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureTree.java Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureVector.java Xact-1.0/uk/ac/sanger/pathogens/embl/FuzzyRange.java Xact-1.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.java Xact-1.0/uk/ac/sanger/pathogens/embl/GFFMisc.java Xact-1.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.java Xact-1.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.java Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankMisc.java Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.java Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.java Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.java Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.java Xact-1.0/uk/ac/sanger/pathogens/embl/KeyVector.java Xact-1.0/uk/ac/sanger/pathogens/embl/LineGroup.java Xact-1.0/uk/ac/sanger/pathogens/embl/LineGroupVector.java Xact-1.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.java Xact-1.0/uk/ac/sanger/pathogens/embl/Location.java Xact-1.0/uk/ac/sanger/pathogens/embl/LocationLexer.java Xact-1.0/uk/ac/sanger/pathogens/embl/Qualifier.java Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseException.java Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseNode.java Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.java Xact-1.0/uk/ac/sanger/pathogens/embl/LowerInteger.java Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.java Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.java Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.java Xact-1.0/uk/ac/sanger/pathogens/embl/OutOfDateException.java Xact-1.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.java Xact-1.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/PushBackException.java Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfo.java Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.java Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.java Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierParseException.java Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierVector.java Xact-1.0/uk/ac/sanger/pathogens/embl/RWCorbaEntry.java Xact-1.0/uk/ac/sanger/pathogens/embl/RWCorbaFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/Range.java Xact-1.0/uk/ac/sanger/pathogens/embl/RangeVector.java Xact-1.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.java Xact-1.0/uk/ac/sanger/pathogens/embl/ReadFormatException.java Xact-1.0/uk/ac/sanger/pathogens/embl/ReadOnlyEntry.java Xact-1.0/uk/ac/sanger/pathogens/embl/Sequence.java Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.java Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.java Xact-1.0/uk/ac/sanger/pathogens/embl/StreamFeature.java Xact-1.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.java Xact-1.0/uk/ac/sanger/pathogens/embl/StreamQualifier.java Xact-1.0/uk/ac/sanger/pathogens/embl/StreamSequence.java Xact-1.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.java Xact-1.0/uk/ac/sanger/pathogens/embl/UpperInteger.java Xact-1.0/uk/ac/sanger/pathogens/embl/embl.example Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.class Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.class Xact-1.0/uk/ac/sanger/pathogens/embl/EntryInformation.class Xact-1.0/uk/ac/sanger/pathogens/embl/EntryInformationException.class Xact-1.0/uk/ac/sanger/pathogens/embl/ReadFormatException.class Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.class Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.class Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.class Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfo.class Xact-1.0/uk/ac/sanger/pathogens/embl/Key.class Xact-1.0/uk/ac/sanger/pathogens/embl/KeyVector.class Xact-1.0/uk/ac/sanger/pathogens/embl/Qualifier.class Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntry.class Xact-1.0/uk/ac/sanger/pathogens/embl/Entry.class Xact-1.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.class Xact-1.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.class Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.class Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry$1.class Xact-1.0/uk/ac/sanger/pathogens/embl/LineGroup.class Xact-1.0/uk/ac/sanger/pathogens/embl/EMBLObject.class Xact-1.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.class Xact-1.0/uk/ac/sanger/pathogens/embl/PushBackException.class Xact-1.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.class Xact-1.0/uk/ac/sanger/pathogens/embl/StreamSequence.class Xact-1.0/uk/ac/sanger/pathogens/embl/Sequence.class Xact-1.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.class Xact-1.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.class Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.class Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentFeature.class Xact-1.0/uk/ac/sanger/pathogens/embl/Feature.class Xact-1.0/uk/ac/sanger/pathogens/embl/StreamFeature.class Xact-1.0/uk/ac/sanger/pathogens/embl/ComparableFeature.class Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierParseException.class Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureHeader.class Xact-1.0/uk/ac/sanger/pathogens/embl/EmblMisc.class Xact-1.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.class Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.class Xact-1.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.class Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.class Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankMisc.class Xact-1.0/uk/ac/sanger/pathogens/embl/GFFMisc.class Xact-1.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.class Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.class Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.class Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.class Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.class Xact-1.0/uk/ac/sanger/pathogens/embl/Range.class Xact-1.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.class Xact-1.0/uk/ac/sanger/pathogens/embl/RangeVector.class Xact-1.0/uk/ac/sanger/pathogens/embl/Location.class Xact-1.0/uk/ac/sanger/pathogens/embl/LocationLexer.class Xact-1.0/uk/ac/sanger/pathogens/embl/LocationLexer$TokenEnumeration.class Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseException.class Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierVector.class Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.class Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureVector.class Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.class Xact-1.0/uk/ac/sanger/pathogens/embl/LineGroupVector.class Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureTable.class Xact-1.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.class Xact-1.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.class Xact-1.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.class Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.class Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseNode.class Xact-1.0/uk/ac/sanger/pathogens/embl/StreamQualifier.class Xact-1.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.class Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.class Xact-1.0/uk/ac/sanger/pathogens/embl/LowerInteger.class Xact-1.0/uk/ac/sanger/pathogens/embl/UpperInteger.class Xact-1.0/uk/ac/sanger/pathogens/embl/FuzzyRange.class Xact-1.0/uk/ac/sanger/pathogens/embl/OutOfDateException.class Xact-1.0/uk/ac/sanger/pathogens/embl/DateStampFeature.class Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.class Xact-1.0/uk/ac/sanger/pathogens/embl/BetweenRange.class Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureTree.class Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureTree$FeatureEnumerator.class Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureComparator.class Xact-1.0/uk/ac/sanger/pathogens/OutOfRangeException.class Xact-1.0/uk/ac/sanger/pathogens/StringVector.class Xact-1.0/uk/ac/sanger/pathogens/StringVector$1.class Xact-1.0/uk/ac/sanger/pathogens/ReadOnlyException.class Xact-1.0/uk/ac/sanger/pathogens/Document.class Xact-1.0/uk/ac/sanger/pathogens/InputStreamProgressListener.class Xact-1.0/uk/ac/sanger/pathogens/FileDocument.class Xact-1.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.class Xact-1.0/uk/ac/sanger/pathogens/FileProgressDocument.class Xact-1.0/uk/ac/sanger/pathogens/FastVector.class Xact-1.0/uk/ac/sanger/pathogens/ProgressInputStream.class Xact-1.0/diana/CVS/Root Xact-1.0/diana/CVS/Repository Xact-1.0/diana/CVS/Entries Xact-1.0/diana/AlignMatch.java Xact-1.0/diana/AlignMatchVector.java Xact-1.0/diana/ChangeEvent.java Xact-1.0/diana/ChangeListener.java Xact-1.0/diana/ClipBoard.java Xact-1.0/diana/ComparisonData.java Xact-1.0/diana/ComparisonDataFactory.java Xact-1.0/diana/ComparisonDataParseException.java Xact-1.0/diana/Entry.java Xact-1.0/diana/EntryChangeEvent.java Xact-1.0/diana/EntryChangeListener.java Xact-1.0/diana/EntryGroup.java Xact-1.0/diana/EntryGroupChangeEvent.java Xact-1.0/diana/EntryGroupChangeListener.java Xact-1.0/diana/EntrySource.java Xact-1.0/diana/plot/CVS/Root Xact-1.0/diana/plot/CVS/Repository Xact-1.0/diana/plot/CVS/Entries Xact-1.0/diana/plot/AGWindowAlgorithm.java Xact-1.0/diana/plot/ATDeviationAlgorithm.java Xact-1.0/diana/plot/Algorithm.java Xact-1.0/diana/plot/BaseAlgorithm.java Xact-1.0/diana/plot/Codon12CorrelationAlgorithm.java Xact-1.0/diana/plot/CodonUsageAlgorithm.java Xact-1.0/diana/plot/CodonUsageFormatException.java Xact-1.0/diana/plot/CodonUsageWeight.java Xact-1.0/diana/plot/CodonWeight.java Xact-1.0/diana/plot/CoilFeatureAlgorithm.java Xact-1.0/diana/plot/HydroAlgorithm.java Xact-1.0/diana/plot/FeatureAlgorithm.java Xact-1.0/diana/plot/GCDeviationAlgorithm.java Xact-1.0/diana/plot/GCFrameAlgorithm.java Xact-1.0/diana/plot/GCSDWindowAlgorithm.java Xact-1.0/diana/plot/GCWindowAlgorithm.java Xact-1.0/diana/plot/HydrophilicityAlgorithm.java Xact-1.0/diana/plot/HydrophobicityAlgorithm.java Xact-1.0/diana/plot/UserDataAlgorithm.java Xact-1.0/diana/plot/BaseAlgorithm.class Xact-1.0/diana/plot/Algorithm.class Xact-1.0/diana/plot/Codon12CorrelationAlgorithm.class Xact-1.0/diana/plot/GCWindowAlgorithm.class Xact-1.0/diana/plot/GCSDWindowAlgorithm.class Xact-1.0/diana/plot/AGWindowAlgorithm.class Xact-1.0/diana/plot/GCFrameAlgorithm.class Xact-1.0/diana/plot/GCDeviationAlgorithm.class Xact-1.0/diana/plot/ATDeviationAlgorithm.class Xact-1.0/diana/plot/UserDataAlgorithm.class Xact-1.0/diana/plot/CodonUsageAlgorithm.class Xact-1.0/diana/plot/CodonUsageWeight.class Xact-1.0/diana/plot/CodonWeight.class Xact-1.0/diana/plot/FeatureAlgorithm.class Xact-1.0/diana/plot/HydrophobicityAlgorithm.class Xact-1.0/diana/plot/HydroAlgorithm.class Xact-1.0/diana/plot/HydrophilicityAlgorithm.class Xact-1.0/diana/plot/CoilFeatureAlgorithm.class Xact-1.0/diana/plot/CodonUsageFormatException.class Xact-1.0/diana/EntrySourceVector.java Xact-1.0/diana/EntryVector.java Xact-1.0/diana/ExternalApplication.java Xact-1.0/diana/ExternalProgram.java Xact-1.0/diana/ExternalProgramException.java Xact-1.0/diana/ExternalProgramVector.java Xact-1.0/diana/ExternalSearchProgram.java Xact-1.0/diana/Feature.java Xact-1.0/diana/FeatureChangeEvent.java Xact-1.0/diana/FeatureChangeListener.java Xact-1.0/diana/FeatureEnumeration.java Xact-1.0/diana/FeatureFromVectorPredicate.java Xact-1.0/diana/FeatureKeyPredicate.java Xact-1.0/diana/FeatureKeyQualifierPredicate.java Xact-1.0/diana/FeatureSegment.java Xact-1.0/diana/FeaturePredicate.java Xact-1.0/diana/FeatureSegmentVector.java Xact-1.0/diana/FeatureVector.java Xact-1.0/diana/FilteredEntryGroup.java Xact-1.0/diana/GotoEvent.java Xact-1.0/diana/GotoEventSource.java Xact-1.0/diana/GotoListener.java Xact-1.0/diana/LastSegmentException.java Xact-1.0/diana/Logger.java Xact-1.0/diana/MSPcrunchComparisonData.java Xact-1.0/diana/MUMmerComparisonData.java Xact-1.0/diana/Options.java Xact-1.0/diana/Selectable.java Xact-1.0/diana/Selection.java Xact-1.0/diana/SelectionChangeEvent.java Xact-1.0/diana/SelectionChangeListener.java Xact-1.0/diana/helix.gif Xact-1.0/diana/SimpleComparisonData.java Xact-1.0/diana/SimpleEntryGroup.java Xact-1.0/diana/SimpleGotoEventSource.java Xact-1.0/diana/sanger-centre.gif Xact-1.0/diana/components/CVS/Root Xact-1.0/diana/components/CVS/Repository Xact-1.0/diana/components/CVS/Entries Xact-1.0/diana/components/ActMain.java Xact-1.0/diana/components/AddMenu.java Xact-1.0/diana/components/AlignmentViewer.java Xact-1.0/diana/components/ArtemisMain.java Xact-1.0/diana/components/BasePlot.java Xact-1.0/diana/components/BasePlotGroup.java Xact-1.0/diana/components/CanvasPanel.java Xact-1.0/diana/components/Comparator.java Xact-1.0/diana/components/ComparatorDialog.java Xact-1.0/diana/components/CorbaEntrySource.java Xact-1.0/diana/components/DisplayAdjustmentEvent.java Xact-1.0/diana/components/DisplayAdjustmentListener.java Xact-1.0/diana/components/DisplayComponent.java Xact-1.0/diana/components/EMBLCorbaEntrySource.java Xact-1.0/diana/components/EditMenu.java Xact-1.0/diana/components/EnsemblEntrySource.java Xact-1.0/diana/components/EntryActionListener.java Xact-1.0/diana/components/EntryEdit.java Xact-1.0/diana/components/EntryEditVector.java Xact-1.0/diana/components/EntryFileDialog.java Xact-1.0/diana/components/EntryGroupDisplay.java Xact-1.0/diana/components/EntryGroupInfoDisplay.java Xact-1.0/diana/components/EntryGroupMenu.java Xact-1.0/diana/components/EntryGroupPanel.java Xact-1.0/diana/components/EntryHeaderEdit.java Xact-1.0/diana/components/ExternalProgramOptions.java Xact-1.0/diana/components/FeatureAminoAcidViewer.java Xact-1.0/diana/components/FeatureBaseViewer.java Xact-1.0/diana/components/FeatureDisplay.java Xact-1.0/diana/components/FeatureDisplayOwner.java Xact-1.0/diana/components/FeatureEdit.java Xact-1.0/diana/components/FeatureInfo.java Xact-1.0/diana/components/FeatureList.java Xact-1.0/diana/components/FeatureListFrame.java Xact-1.0/diana/components/FeaturePlot.java Xact-1.0/diana/components/FeaturePlotGroup.java Xact-1.0/diana/components/FeaturePopup.java Xact-1.0/diana/components/FeatureViewer.java Xact-1.0/diana/components/FileDialogEntrySource.java Xact-1.0/diana/components/FileViewer.java Xact-1.0/diana/components/GotoMenu.java Xact-1.0/diana/components/KeyChoice.java Xact-1.0/diana/components/KeyChooser.java Xact-1.0/diana/components/ListDialog.java Xact-1.0/diana/components/LogViewer.java Xact-1.0/diana/components/MarkerRangeRequester.java Xact-1.0/diana/components/MarkerRangeRequesterEvent.java Xact-1.0/diana/components/MarkerRangeRequesterListener.java Xact-1.0/diana/components/MessageDialog.java Xact-1.0/diana/components/MessageFrame.java Xact-1.0/diana/components/Navigator.java Xact-1.0/diana/components/Plot.java Xact-1.0/diana/components/PlotMouseListener.java Xact-1.0/diana/components/ProcessWatcher.java Xact-1.0/diana/components/ProcessWatcherEvent.java Xact-1.0/diana/components/ProcessWatcherListener.java Xact-1.0/diana/components/QualifierChoice.java Xact-1.0/diana/components/RawFeatureEdit.java Xact-1.0/diana/components/RunMenu.java Xact-1.0/diana/components/ScoreChangeEvent.java Xact-1.0/diana/components/ScoreChangeListener.java Xact-1.0/diana/components/ScoreChanger.java Xact-1.0/diana/components/ScoreScrollbar.java Xact-1.0/diana/components/SearchResultViewer.java Xact-1.0/diana/components/SelectMenu.java Xact-1.0/diana/components/SelectionInfoDisplay.java Xact-1.0/diana/components/SelectionMenu.java Xact-1.0/diana/components/SelectionViewer.java Xact-1.0/diana/components/Selector.java Xact-1.0/diana/components/SequenceViewer.java Xact-1.0/diana/components/Splash.java Xact-1.0/diana/components/TextDialog.java Xact-1.0/diana/components/TextRequester.java Xact-1.0/diana/components/TextRequesterEvent.java Xact-1.0/diana/components/TextRequesterListener.java Xact-1.0/diana/components/ViewMenu.java Xact-1.0/diana/components/WritableEMBLCorbaEntrySource.java Xact-1.0/diana/components/WriteMenu.java Xact-1.0/diana/components/Plot.class Xact-1.0/diana/components/YesNoDialog.java Xact-1.0/diana/components/ActMain.class Xact-1.0/diana/components/ActMain$1.class Xact-1.0/diana/components/ActMain$2.class Xact-1.0/diana/components/Splash.class Xact-1.0/diana/components/Splash$1.class Xact-1.0/diana/components/Splash$2.class Xact-1.0/diana/components/Splash$3.class Xact-1.0/diana/components/MessageFrame.class Xact-1.0/diana/components/MessageFrame$1.class Xact-1.0/diana/components/MessageFrame$2.class Xact-1.0/diana/components/MessageFrame$3.class Xact-1.0/diana/components/LogViewer.class Xact-1.0/diana/components/LogViewer$1.class Xact-1.0/diana/components/EntryFileDialog.class Xact-1.0/diana/components/Comparator.class Xact-1.0/diana/components/Comparator$1.class Xact-1.0/diana/components/Comparator$2.class Xact-1.0/diana/components/Comparator$3.class Xact-1.0/diana/components/Comparator$4.class Xact-1.0/diana/components/Comparator$5.class Xact-1.0/diana/components/Comparator$6.class Xact-1.0/diana/components/Comparator$7.class Xact-1.0/diana/components/Comparator$8.class Xact-1.0/diana/components/Comparator$9.class Xact-1.0/diana/components/Comparator$10.class Xact-1.0/diana/components/Comparator$11.class Xact-1.0/diana/components/Comparator$12.class Xact-1.0/diana/components/Comparator$13.class Xact-1.0/diana/components/Comparator$14.class Xact-1.0/diana/components/Comparator$15.class Xact-1.0/diana/components/FeatureDisplayOwner.class Xact-1.0/diana/components/ComparatorDialog.class Xact-1.0/diana/components/ComparatorDialog$1.class Xact-1.0/diana/components/ComparatorDialog$2.class Xact-1.0/diana/components/ComparatorDialog$3.class Xact-1.0/diana/components/ComparatorDialog$4.class Xact-1.0/diana/components/ComparatorDialog$5.class Xact-1.0/diana/components/ComparatorDialog$6.class Xact-1.0/diana/components/FileViewer.class Xact-1.0/diana/components/FileDialogEntrySource.class Xact-1.0/diana/components/FileViewer$1.class Xact-1.0/diana/components/FileViewer$2.class Xact-1.0/diana/components/FileViewer$3.class Xact-1.0/diana/components/MessageDialog.class Xact-1.0/diana/components/MessageDialog$1.class Xact-1.0/diana/components/MessageDialog$2.class Xact-1.0/diana/components/MessageDialog$3.class Xact-1.0/diana/components/YesNoDialog.class Xact-1.0/diana/components/YesNoDialog$1.class Xact-1.0/diana/components/YesNoDialog$2.class Xact-1.0/diana/components/YesNoDialog$3.class Xact-1.0/diana/components/BasePlotGroup.class Xact-1.0/diana/components/BasePlot.class Xact-1.0/diana/components/DisplayAdjustmentListener.class Xact-1.0/diana/components/FeatureDisplay.class Xact-1.0/diana/components/FeatureDisplay$1.class Xact-1.0/diana/components/FeatureDisplay$2.class Xact-1.0/diana/components/FeatureDisplay$3.class Xact-1.0/diana/components/FeatureDisplay$4.class Xact-1.0/diana/components/FeatureDisplay$5.class Xact-1.0/diana/components/FeatureDisplay$6.class Xact-1.0/diana/components/EntryGroupPanel.class Xact-1.0/diana/components/DisplayComponent.class Xact-1.0/diana/components/EntryGroupPanel$1.class Xact-1.0/diana/components/CanvasPanel.class Xact-1.0/diana/components/CanvasPanel$1.class Xact-1.0/diana/components/AlignmentViewer.class Xact-1.0/diana/components/AlignmentViewer$1.class Xact-1.0/diana/components/AlignmentViewer$2.class Xact-1.0/diana/components/AlignmentViewer$3.class Xact-1.0/diana/components/AlignmentViewer$4.class Xact-1.0/diana/components/AlignmentViewer$5.class Xact-1.0/diana/components/DisplayAdjustmentEvent.class Xact-1.0/diana/components/BasePlot$1.class Xact-1.0/diana/components/Plot$1.class Xact-1.0/diana/components/Plot$2.class Xact-1.0/diana/components/Plot$3.class Xact-1.0/diana/components/Plot$4.class Xact-1.0/diana/components/Plot$5.class Xact-1.0/diana/components/Plot$6.class Xact-1.0/diana/components/Plot$7.class Xact-1.0/diana/components/FeaturePopup.class Xact-1.0/diana/components/FeaturePopup$1.class Xact-1.0/diana/components/FeaturePopup$2.class Xact-1.0/diana/components/FeaturePopup$3.class Xact-1.0/diana/components/FeaturePopup$4.class Xact-1.0/diana/components/FeaturePopup$5.class Xact-1.0/diana/components/FeaturePopup$6.class Xact-1.0/diana/components/FeaturePopup$7.class Xact-1.0/diana/components/EditMenu.class Xact-1.0/diana/components/FeaturePopup$8.class Xact-1.0/diana/components/FeaturePopup$9.class Xact-1.0/diana/components/FeaturePopup$10.class Xact-1.0/diana/components/FeaturePopup$11.class Xact-1.0/diana/components/FeaturePopup$12.class Xact-1.0/diana/components/FeaturePopup$13.class Xact-1.0/diana/components/FeaturePopup$14.class Xact-1.0/diana/components/FeaturePopup$15.class Xact-1.0/diana/components/FeaturePopup$16.class Xact-1.0/diana/components/FeaturePopup$17.class Xact-1.0/diana/components/FeaturePopup$18.class Xact-1.0/diana/components/FeaturePopup$19.class Xact-1.0/diana/components/FeaturePopup$20.class Xact-1.0/diana/components/FeaturePopup$21.class Xact-1.0/diana/components/FeatureEdit.class Xact-1.0/diana/components/FeatureEdit$1.class Xact-1.0/diana/components/FeatureEdit$2.class Xact-1.0/diana/components/FeatureEdit$3.class Xact-1.0/diana/components/FeatureEdit$4.class Xact-1.0/diana/components/FeatureEdit$5.class Xact-1.0/diana/components/FeatureEdit$6.class Xact-1.0/diana/components/FeatureEdit$7.class Xact-1.0/diana/components/FeatureEdit$8.class Xact-1.0/diana/components/FeatureEdit$9.class Xact-1.0/diana/components/FeatureEdit$10.class Xact-1.0/diana/components/EditMenu$1.class Xact-1.0/diana/components/EditMenu$2.class Xact-1.0/diana/components/EditMenu$3.class Xact-1.0/diana/components/EditMenu$4.class Xact-1.0/diana/components/EditMenu$5.class Xact-1.0/diana/components/EditMenu$6.class Xact-1.0/diana/components/EditMenu$7.class Xact-1.0/diana/components/EditMenu$8.class Xact-1.0/diana/components/EditMenu$9.class Xact-1.0/diana/components/EditMenu$10.class Xact-1.0/diana/components/EditMenu$11.class Xact-1.0/diana/components/EditMenu$12.class Xact-1.0/diana/components/EditMenu$13.class Xact-1.0/diana/components/EditMenu$14.class Xact-1.0/diana/components/EditMenu$15.class Xact-1.0/diana/components/EditMenu$16.class Xact-1.0/diana/components/EditMenu$17.class Xact-1.0/diana/components/EditMenu$18.class Xact-1.0/diana/components/EditMenu$19.class Xact-1.0/diana/components/EditMenu$20.class Xact-1.0/diana/components/EditMenu$21.class Xact-1.0/diana/components/EditMenu$22.class Xact-1.0/diana/components/SelectionMenu.class Xact-1.0/diana/components/EntryEdit.class Xact-1.0/diana/components/EntryEdit$1.class Xact-1.0/diana/components/EntryEdit$2.class Xact-1.0/diana/components/EntryEdit$3.class Xact-1.0/diana/components/EntryEdit$4.class Xact-1.0/diana/components/EntryEdit$5.class Xact-1.0/diana/components/EntryEdit$6.class Xact-1.0/diana/components/EntryEdit$7.class Xact-1.0/diana/components/EntryEdit$8.class Xact-1.0/diana/components/EntryEdit$9.class Xact-1.0/diana/components/EntryEdit$10.class Xact-1.0/diana/components/EntryEdit$11.class Xact-1.0/diana/components/EntryEdit$12.class Xact-1.0/diana/components/EntryEdit$13.class Xact-1.0/diana/components/EntryEdit$14.class Xact-1.0/diana/components/EntryEdit$15.class Xact-1.0/diana/components/ReadFeaturesActionListener.class Xact-1.0/diana/components/SaveEntryActionListener.class Xact-1.0/diana/components/SaveEntryAsActionListener.class Xact-1.0/diana/components/EntryHeaderEdit.class Xact-1.0/diana/components/SaveEntryAsEMBLActionListener.class Xact-1.0/diana/components/SaveEntryAsGenbankActionListener.class Xact-1.0/diana/components/SaveEntryAsGFFActionListener.class Xact-1.0/diana/components/SaveEntryAsSubmissionActionListener.class Xact-1.0/diana/components/EntryHeaderEdit$1.class Xact-1.0/diana/components/FeatureListFrame.class Xact-1.0/diana/components/FeatureListFrame$1.class Xact-1.0/diana/components/FeatureListFrame$2.class Xact-1.0/diana/components/FeatureListFrame$3.class Xact-1.0/diana/components/TextRequester.class Xact-1.0/diana/components/TextRequester$1.class Xact-1.0/diana/components/TextRequester$2.class Xact-1.0/diana/components/TextRequester$3.class Xact-1.0/diana/components/ViewMenu.class Xact-1.0/diana/components/TextRequesterListener.class Xact-1.0/diana/components/TextRequesterEvent.class Xact-1.0/diana/components/ViewMenu$1.class Xact-1.0/diana/components/ViewMenu$2.class Xact-1.0/diana/components/ViewMenu$3.class Xact-1.0/diana/components/ViewMenu$4.class Xact-1.0/diana/components/ViewMenu$5.class Xact-1.0/diana/components/ViewMenu$6.class Xact-1.0/diana/components/ViewMenu$7.class Xact-1.0/diana/components/ViewMenu$8.class Xact-1.0/diana/components/ViewMenu$9.class Xact-1.0/diana/components/ViewMenu$10.class Xact-1.0/diana/components/ViewMenu$11.class Xact-1.0/diana/components/ViewMenu$12.class Xact-1.0/diana/components/ViewMenu$13.class Xact-1.0/diana/components/ViewMenu$14.class Xact-1.0/diana/components/ViewMenu$15.class Xact-1.0/diana/components/ViewMenu$16.class Xact-1.0/diana/components/ViewMenu$17.class Xact-1.0/diana/components/ViewMenu$18.class Xact-1.0/diana/components/ViewMenu$19.class Xact-1.0/diana/components/ViewMenu$20.class Xact-1.0/diana/components/ViewMenu$21.class Xact-1.0/diana/components/ViewMenu$22.class Xact-1.0/diana/components/ViewMenu$23.class Xact-1.0/diana/components/ViewMenu$24.class Xact-1.0/diana/components/ViewMenu$25.class Xact-1.0/diana/components/ViewMenu$26.class Xact-1.0/diana/components/ViewMenu$27.class Xact-1.0/diana/components/ViewMenu$28.class Xact-1.0/diana/components/ViewMenu$29.class Xact-1.0/diana/components/SelectionViewer.class Xact-1.0/diana/components/SelectionViewer$1.class Xact-1.0/diana/components/EntryGroupInfoDisplay.class Xact-1.0/diana/components/EntryGroupInfoDisplay$1.class Xact-1.0/diana/components/EntryGroupInfoDisplay$2.class Xact-1.0/diana/components/FeatureList.class Xact-1.0/diana/components/EntryGroupInfoDisplay$3.class Xact-1.0/diana/components/FeatureList$1.class Xact-1.0/diana/components/FeatureList$2.class Xact-1.0/diana/components/FeatureList$3.class Xact-1.0/diana/components/KeyChooser.class Xact-1.0/diana/components/KeyChooser$1.class Xact-1.0/diana/components/KeyChooser$2.class Xact-1.0/diana/components/KeyChooser$3.class Xact-1.0/diana/components/KeyChooser$4.class Xact-1.0/diana/components/KeyChoice.class Xact-1.0/diana/components/KeyChoice$1.class Xact-1.0/diana/components/FeatureViewer.class Xact-1.0/diana/components/FeatureViewer$1.class Xact-1.0/diana/components/GotoMenu.class Xact-1.0/diana/components/FeaturePlotGroup.class Xact-1.0/diana/components/FeaturePlotGroup$1.class Xact-1.0/diana/components/FeaturePlotGroup$2.class Xact-1.0/diana/components/FeaturePlotGroup$3.class Xact-1.0/diana/components/FeaturePlotGroup$4.class Xact-1.0/diana/components/FeaturePlotGroup$5.class Xact-1.0/diana/components/SearchResultViewer.class Xact-1.0/diana/components/SearchResultViewer$1.class Xact-1.0/diana/components/FeatureInfo.class Xact-1.0/diana/components/FeatureInfo$1.class Xact-1.0/diana/components/FeatureInfo$2.class Xact-1.0/diana/components/FeatureBaseViewer.class Xact-1.0/diana/components/FeatureBaseViewer$1.class Xact-1.0/diana/components/FeatureAminoAcidViewer.class Xact-1.0/diana/components/ScoreChangeListener.class Xact-1.0/diana/components/FeatureAminoAcidViewer$1.class Xact-1.0/diana/components/ScoreChangeEvent.class Xact-1.0/diana/components/ScoreChanger.class Xact-1.0/diana/components/ScoreChanger$1.class Xact-1.0/diana/components/ScoreChanger$2.class Xact-1.0/diana/components/ScoreChanger$3.class Xact-1.0/diana/components/ScoreChanger$4.class Xact-1.0/diana/components/ScoreChanger$5.class Xact-1.0/diana/components/PlotMouseListener.class Xact-1.0/diana/components/EntryGroupMenu.class Xact-1.0/diana/components/EntryGroupMenu$1.class Xact-1.0/diana/components/EntryGroupMenu$2.class Xact-1.0/diana/components/EntryGroupMenu$3.class Xact-1.0/diana/components/EntryGroupMenu$4.class Xact-1.0/diana/components/EntryGroupMenu$5.class Xact-1.0/diana/components/SelectMenu.class Xact-1.0/diana/components/EntryGroupMenu$6.class Xact-1.0/diana/components/SelectMenu$1.class Xact-1.0/diana/components/SelectMenu$2.class Xact-1.0/diana/components/SelectMenu$3.class Xact-1.0/diana/components/SelectMenu$4.class Xact-1.0/diana/components/SelectMenu$5.class Xact-1.0/diana/components/SelectMenu$6.class Xact-1.0/diana/components/SelectMenu$7.class Xact-1.0/diana/components/SelectMenu$8.class Xact-1.0/diana/components/SelectMenu$9.class Xact-1.0/diana/components/SelectMenu$10.class Xact-1.0/diana/components/SelectMenu$11.class Xact-1.0/diana/components/SelectMenu$12.class Xact-1.0/diana/components/SelectMenu$13.class Xact-1.0/diana/components/SelectMenu$14.class Xact-1.0/diana/components/SelectMenu$15.class Xact-1.0/diana/components/SelectMenu$16.class Xact-1.0/diana/components/GotoMenu$1.class Xact-1.0/diana/components/GotoMenu$2.class Xact-1.0/diana/components/GotoMenu$3.class Xact-1.0/diana/components/GotoMenu$4.class Xact-1.0/diana/components/GotoMenu$5.class Xact-1.0/diana/components/GotoMenu$6.class Xact-1.0/diana/components/GotoMenu$7.class Xact-1.0/diana/components/GotoMenu$8.class Xact-1.0/diana/components/GotoMenu$9.class Xact-1.0/diana/components/GotoMenu$10.class Xact-1.0/diana/components/AddMenu.class Xact-1.0/diana/components/AddMenu$1.class Xact-1.0/diana/components/AddMenu$2.class Xact-1.0/diana/components/AddMenu$3.class Xact-1.0/diana/components/AddMenu$4.class Xact-1.0/diana/components/AddMenu$5.class Xact-1.0/diana/components/AddMenu$6.class Xact-1.0/diana/components/AddMenu$7.class Xact-1.0/diana/components/AddMenu$8.class Xact-1.0/diana/components/AddMenu$9.class Xact-1.0/diana/components/AddMenu$10.class Xact-1.0/diana/components/AddMenu$11.class Xact-1.0/diana/components/AddMenu$12.class Xact-1.0/diana/components/AddMenu$13.class Xact-1.0/diana/components/AddMenu$14.class Xact-1.0/diana/components/AddMenu$15.class Xact-1.0/diana/components/WriteMenu.class Xact-1.0/diana/components/WriteMenu$1.class Xact-1.0/diana/components/WriteMenu$2.class Xact-1.0/diana/components/WriteMenu$3.class Xact-1.0/diana/components/WriteMenu$4.class Xact-1.0/diana/components/WriteMenu$5.class Xact-1.0/diana/components/WriteMenu$6.class Xact-1.0/diana/components/WriteMenu$7.class Xact-1.0/diana/components/WriteMenu$8.class Xact-1.0/diana/components/WriteMenu$9.class Xact-1.0/diana/components/WriteMenu$10.class Xact-1.0/diana/components/WriteMenu$11.class Xact-1.0/diana/components/WriteMenu$12.class Xact-1.0/diana/components/WriteMenu$13.class Xact-1.0/diana/components/WriteMenu$14.class Xact-1.0/diana/components/WriteMenu$15.class Xact-1.0/diana/components/WriteMenu$16.class Xact-1.0/diana/components/WriteMenu$17.class Xact-1.0/diana/components/WriteMenu$18.class Xact-1.0/diana/components/WriteMenu$19.class Xact-1.0/diana/components/WriteMenu$20.class Xact-1.0/diana/components/WriteMenu$21.class Xact-1.0/diana/components/RunMenu.class Xact-1.0/diana/components/RunMenu$1.class Xact-1.0/diana/components/RunMenu$2.class Xact-1.0/diana/components/QualifierChoice.class Xact-1.0/diana/components/ProcessWatcher.class Xact-1.0/diana/components/ProcessWatcherListener.class Xact-1.0/diana/components/ProcessWatcherEvent.class Xact-1.0/diana/components/EntryGroupDisplay.class Xact-1.0/diana/components/EntryGroupDisplay$1.class Xact-1.0/diana/components/EntryGroupDisplay$2.class Xact-1.0/diana/components/SelectionInfoDisplay.class Xact-1.0/diana/components/EntryActionListener.class Xact-1.0/diana/components/FeaturePlot.class Xact-1.0/diana/components/SequenceViewer.class Xact-1.0/diana/components/ScoreScrollbar.class Xact-1.0/diana/components/Selector.class Xact-1.0/diana/components/Selector$1.class Xact-1.0/diana/components/Selector$2.class Xact-1.0/diana/components/Selector$3.class Xact-1.0/diana/components/Selector$4.class Xact-1.0/diana/components/Selector$5.class Xact-1.0/diana/components/Selector$6.class Xact-1.0/diana/components/Selector$7.class Xact-1.0/diana/components/Navigator.class Xact-1.0/diana/components/Selector$8.class Xact-1.0/diana/components/Selector$9.class Xact-1.0/diana/components/Selector$10.class Xact-1.0/diana/components/Selector$11.class Xact-1.0/diana/components/Selector$12.class Xact-1.0/diana/components/MarkerRangeRequester.class Xact-1.0/diana/components/MarkerRangeRequesterListener.class Xact-1.0/diana/components/MarkerRangeRequesterEvent.class Xact-1.0/diana/components/Navigator$1.class Xact-1.0/diana/components/Navigator$2.class Xact-1.0/diana/components/Navigator$3.class Xact-1.0/diana/components/Navigator$4.class Xact-1.0/diana/components/Navigator$5.class Xact-1.0/diana/components/Navigator$6.class Xact-1.0/diana/components/Navigator$7.class Xact-1.0/diana/components/Navigator$8.class Xact-1.0/diana/components/Navigator$9.class Xact-1.0/diana/components/ExternalProgramOptions.class Xact-1.0/diana/components/ExternalProgramOptions$1.class Xact-1.0/diana/sequence/CVS/Root Xact-1.0/diana/sequence/CVS/Repository Xact-1.0/diana/sequence/CVS/Entries Xact-1.0/diana/sequence/AminoAcidSequence.java Xact-1.0/diana/sequence/BasePattern.java Xact-1.0/diana/sequence/BasePatternFormatException.java Xact-1.0/diana/sequence/Bases.java Xact-1.0/diana/sequence/Marker.java Xact-1.0/diana/sequence/MarkerChangeEvent.java Xact-1.0/diana/sequence/MarkerChangeListener.java Xact-1.0/diana/sequence/MarkerRange.java Xact-1.0/diana/sequence/MarkerRangeVector.java Xact-1.0/diana/sequence/NoSequenceException.java Xact-1.0/diana/sequence/SequenceChangeEvent.java Xact-1.0/diana/sequence/SequenceChangeListener.java Xact-1.0/diana/sequence/Strand.java Xact-1.0/diana/sequence/Bases.class Xact-1.0/diana/sequence/SequenceChangeListener.class Xact-1.0/diana/sequence/NoSequenceException.class Xact-1.0/diana/sequence/Strand.class Xact-1.0/diana/sequence/SequenceChangeEvent.class Xact-1.0/diana/sequence/AminoAcidSequence.class Xact-1.0/diana/sequence/MarkerChangeListener.class Xact-1.0/diana/sequence/Marker.class Xact-1.0/diana/sequence/MarkerInternal.class Xact-1.0/diana/sequence/MarkerRange.class Xact-1.0/diana/sequence/MarkerChangeEvent.class Xact-1.0/diana/sequence/BasePattern.class Xact-1.0/diana/sequence/BasePatternFormatException.class Xact-1.0/diana/sequence/MarkerRangeVector.class Xact-1.0/diana/Logger.class Xact-1.0/diana/Options.class Xact-1.0/diana/EntryGroup.class Xact-1.0/diana/FeatureChangeListener.class Xact-1.0/diana/EntryChangeListener.class Xact-1.0/diana/ChangeListener.class Xact-1.0/diana/SimpleEntryGroup.class Xact-1.0/diana/SimpleEntryGroup$FeatureEnumerator.class Xact-1.0/diana/EntryVector.class Xact-1.0/diana/FeatureEnumeration.class Xact-1.0/diana/Entry.class Xact-1.0/diana/Entry$FeatureEnumerator.class Xact-1.0/diana/Selectable.class Xact-1.0/diana/ComparisonData.class Xact-1.0/diana/ComparisonDataFactory.class Xact-1.0/diana/EntrySourceVector.class Xact-1.0/diana/EntrySource.class Xact-1.0/diana/ExternalProgramVector.class Xact-1.0/diana/ExternalSearchProgram.class Xact-1.0/diana/ExternalProgram.class Xact-1.0/diana/Feature.class Xact-1.0/diana/ExternalProgramException.class Xact-1.0/diana/ExternalApplication.class Xact-1.0/diana/ChangeEvent.class Xact-1.0/diana/LastSegmentException.class Xact-1.0/diana/FeatureVector.class Xact-1.0/diana/EntryGroupChangeListener.class Xact-1.0/diana/FeatureChangeEvent.class Xact-1.0/diana/EntryChangeEvent.class Xact-1.0/diana/EntryGroupChangeEvent.class Xact-1.0/diana/FeatureKeyQualifierPredicate.class Xact-1.0/diana/FeaturePredicate.class Xact-1.0/diana/AlignMatch.class Xact-1.0/diana/MSPcrunchComparisonData.class Xact-1.0/diana/SimpleComparisonData.class Xact-1.0/diana/SelectionChangeListener.class Xact-1.0/diana/GotoListener.class Xact-1.0/diana/Selection.class Xact-1.0/diana/GotoEventSource.class Xact-1.0/diana/SimpleGotoEventSource.class Xact-1.0/diana/GotoEvent.class Xact-1.0/diana/SelectionChangeEvent.class Xact-1.0/diana/FeatureSegmentVector.class Xact-1.0/diana/FeatureSegment.class Xact-1.0/diana/ComparisonDataParseException.class Xact-1.0/diana/FeatureFromVectorPredicate.class Xact-1.0/diana/FilteredEntryGroup.class Xact-1.0/diana/FilteredEntryGroup$1.class Xact-1.0/diana/FilteredEntryGroup$2.class Xact-1.0/diana/FilteredEntryGroup$3.class Xact-1.0/diana/FilteredEntryGroup$FeatureEnumerator.class Xact-1.0/diana/FeatureKeyPredicate.class Xact-1.0/diana/AlignMatchVector.class Xact-1.0/etc/CVS/Root Xact-1.0/etc/CVS/Repository Xact-1.0/etc/CVS/Entries Xact-1.0/etc/c1215.embl Xact-1.0/etc/changes.shtml Xact-1.0/etc/feature_keys Xact-1.0/etc/options Xact-1.0/etc/pombe.usage Xact-1.0/etc/qualifier_types Xact-1.0/collections/CVS/Root Xact-1.0/collections/CVS/Repository Xact-1.0/collections/CVS/Entries Xact-1.0/collections/ArrayEnumeration.java Xact-1.0/collections/Assertable.java Xact-1.0/collections/Bag.java Xact-1.0/collections/BinaryFunction.java Xact-1.0/collections/CEImpl.java Xact-1.0/collections/CLCell.java Xact-1.0/collections/CLEnumeration.java Xact-1.0/collections/Cell.java Xact-1.0/collections/CheckedBag.java Xact-1.0/collections/CheckedCollection.java Xact-1.0/collections/CheckedMap.java Xact-1.0/collections/CheckedSeq.java Xact-1.0/collections/CheckedSet.java Xact-1.0/collections/Keyed.java Xact-1.0/collections/CircularList.java Xact-1.0/collections/Collection.java Xact-1.0/collections/CollectionEnumeration.java Xact-1.0/collections/Comparator.java Xact-1.0/collections/Dynarray.java Xact-1.0/collections/CorruptedEnumerationException.java Xact-1.0/collections/DAEnumeration.java Xact-1.0/collections/DefaultComparator.java Xact-1.0/collections/DefaultImplementations.java Xact-1.0/collections/ElementSortedCollection.java Xact-1.0/collections/FilteringEnumeration.java Xact-1.0/collections/Function.java Xact-1.0/collections/HTEnumeration.java Xact-1.0/collections/HTPairEnumeration.java Xact-1.0/collections/HashTableParams.java Xact-1.0/collections/HashedMap.java Xact-1.0/collections/HashedSet.java Xact-1.0/collections/IllegalElementException.java Xact-1.0/collections/Immutable.java Xact-1.0/collections/ImplementationCheckable.java Xact-1.0/collections/IncrBag.java Xact-1.0/collections/ImplementationError.java Xact-1.0/collections/IncrCollectionEnumeration.java Xact-1.0/collections/IncrImpl.java Xact-1.0/collections/IncrMap.java Xact-1.0/collections/IncrSeq.java Xact-1.0/collections/IncrSet.java Xact-1.0/collections/InterleavingEnumeration.java Xact-1.0/collections/KeySortedCollection.java Xact-1.0/collections/LBEnumeration.java Xact-1.0/collections/LLCell.java Xact-1.0/collections/LLCellEnumeration.java Xact-1.0/collections/LLMap.java Xact-1.0/collections/LLPair.java Xact-1.0/collections/LLPairEnumeration.java Xact-1.0/collections/LinkedBuffer.java Xact-1.0/collections/LinkedList.java Xact-1.0/collections/Map.java Xact-1.0/collections/MappingEnumeration.java Xact-1.0/collections/Pair.java Xact-1.0/collections/Predicate.java Xact-1.0/collections/Procedure.java Xact-1.0/collections/RBCell.java Xact-1.0/collections/RBCellEnumeration.java Xact-1.0/collections/RBMap.java Xact-1.0/collections/RBPair.java Xact-1.0/collections/RBPairEnumeration.java Xact-1.0/collections/RBTree.java Xact-1.0/collections/Seq.java Xact-1.0/collections/Set.java Xact-1.0/collections/SimpleTest.java Xact-1.0/collections/SortableCollection.java Xact-1.0/collections/UpdatableBag.java Xact-1.0/collections/UpdatableBagImpl.java Xact-1.0/collections/UpdatableCollection.java Xact-1.0/collections/UpdatableImpl.java Xact-1.0/collections/UpdatableMap.java Xact-1.0/collections/UpdatableMapImpl.java Xact-1.0/collections/javaMake Xact-1.0/collections/UpdatableSeq.java Xact-1.0/collections/UpdatableSeqImpl.java Xact-1.0/collections/UpdatableSet.java Xact-1.0/collections/UpdatableSetImpl.java Xact-1.0/collections/collections_Dynarray.h Xact-1.0/collections/Dynarray.class Xact-1.0/collections/UpdatableSeqImpl.class Xact-1.0/collections/UpdatableSeq.class Xact-1.0/collections/SortableCollection.class Xact-1.0/collections/Seq.class Xact-1.0/collections/UpdatableImpl.class Xact-1.0/collections/UpdatableCollection.class Xact-1.0/collections/IllegalElementException.class Xact-1.0/collections/CorruptedEnumerationException.class Xact-1.0/collections/ImplementationError.class Xact-1.0/collections/Collection.class Xact-1.0/collections/ImplementationCheckable.class Xact-1.0/collections/Assertable.class Xact-1.0/collections/Comparator.class Xact-1.0/collections/Predicate.class Xact-1.0/collections/CollectionEnumeration.class Xact-1.0/collections/DAEnumeration.class Xact-1.0/collections/CEImpl.class Xact-1.0/collections/KeySortedCollection.class Xact-1.0/collections/Map.class Xact-1.0/collections/ElementSortedCollection.class Xact-1.0/collections/Bag.class Xact-1.0/collections/Set.class Xact-1.0/collections/RBTree.class Xact-1.0/collections/UpdatableBagImpl.class Xact-1.0/collections/UpdatableBag.class Xact-1.0/collections/RBCell.class Xact-1.0/collections/Cell.class Xact-1.0/collections/DefaultComparator.class Xact-1.0/collections/RBCellEnumeration.class Xact-1.0/collections/Keyed.class Xact-1.0/Dad.class Xact-1.0/AppGlobal.class Xbin/act X@dirrm act-1.0/CVS X@dirrm act-1.0/META-INF/CVS X@dirrm act-1.0/META-INF X@dirrm act-1.0/uk/CVS X@dirrm act-1.0/uk/ac/CVS X@dirrm act-1.0/uk/ac/sanger/CVS X@dirrm act-1.0/uk/ac/sanger/pathogens/CVS X@dirrm act-1.0/uk/ac/sanger/pathogens/embl/CVS X@dirrm act-1.0/uk/ac/sanger/pathogens/embl X@dirrm act-1.0/uk/ac/sanger/pathogens X@dirrm act-1.0/uk/ac/sanger X@dirrm act-1.0/uk/ac X@dirrm act-1.0/uk X@dirrm act-1.0/diana/CVS X@dirrm act-1.0/diana/plot/CVS X@dirrm act-1.0/diana/plot X@dirrm act-1.0/diana/components/CVS X@dirrm act-1.0/diana/components X@dirrm act-1.0/diana/sequence/CVS X@dirrm act-1.0/diana/sequence X@dirrm act-1.0/diana X@dirrm act-1.0/etc/CVS X@dirrm act-1.0/etc X@dirrm act-1.0/collections/CVS X@dirrm act-1.0/collections X@dirrm act-1.0 END-of-act/pkg-plist exit >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message