From owner-freebsd-pkg-fallout@FreeBSD.ORG Thu Jan 16 14:13:17 2014 Return-Path: Delivered-To: pkg-fallout@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 6779F1BB for ; Thu, 16 Jan 2014 14:13:17 +0000 (UTC) Received: from beefy2.isc.freebsd.org (beefy2.isc.freebsd.org [IPv6:2001:4f8:3:ffe0:4072:0:16:39]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id 50A0710BC; Thu, 16 Jan 2014 14:13:17 +0000 (UTC) Received: from beefy2.isc.freebsd.org (localhost [127.0.0.1]) by beefy2.isc.freebsd.org (8.14.7/8.14.7) with ESMTP id s0GEDHHS077260; Thu, 16 Jan 2014 14:13:17 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy2.isc.freebsd.org (8.14.7/8.14.7/Submit) id s0GEDE7V072711; Thu, 16 Jan 2014 14:13:14 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 16 Jan 2014 14:13:14 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201401161413.s0GEDE7V072711@beefy2.isc.freebsd.org> To: h2+fbsdports@fsfe.org Subject: [REL - head-amd64-default][biology/ugene] Failed for ugene-1.12.3 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.17 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 16 Jan 2014 14:13:17 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: h2+fbsdports@fsfe.org Last committer: danfe@FreeBSD.org Ident: $FreeBSD: head/biology/ugene/Makefile 332391 2013-11-01 15:20:28Z danfe $ Log URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-01-15_19h51m13s/logs/ugene-1.12.3.log Build URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-01-15_19h51m13s Log: ====>> Building biology/ugene build started at Thu Jan 16 12:56:38 UTC 2014 port directory: /usr/ports/biology/ugene building for: FreeBSD head-amd64-default-job-21 11.0-CURRENT FreeBSD 11.0-CURRENT r256430 amd64 maintained by: h2+fbsdports@fsfe.org Makefile ident: $FreeBSD: head/biology/ugene/Makefile 332391 2013-11-01 15:20:28Z danfe $ Poudriere version: 3.1-pre ---Begin Environment--- OSVERSION=1100000 UNAME_v=FreeBSD 11.0-CURRENT r256430 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/head-amd64-default/ref PKG_EXT=txz tpid=77186 POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=ugene-1.12.3 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=head-amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for ugene-1.12.3: DOCS=on: Install official UGENE documentation (PDF) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --with-qt-includes=/usr/local/include/qt4 --with-qt-libraries=/usr/local/lib/qt4 --with-extra-includes=/usr/local/include --with-extra-libs=/usr/local/lib --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" QTDIR="/usr/local" QMAKE="/usr/local/bin/qmake-qt4" MOC="/usr/local/bin/moc-qt4" RCC="/usr/local/bin/rcc" UIC="/usr/local/bin/uic-qt4" QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-$(ccver="$(c++ --version)"; case "$ccver" in *clang*) echo clang ;; *) echo g++ ;; esac)" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing -std=c++11" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ugene DOCSDIR=/usr/local/share/ugene/manuals EXAMPLESDIR=/usr/local/share/examples/ugene WWWDIR=/usr/local/www/ugene ETCDIR=/usr/local/etc/ugene --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for ugene-1.12.3 =================================================== =========================================================================== =================================================== ===> ugene-1.12.3 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.5.txz Installing pkg-1.2.5... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of ugene-1.12.3 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by ugene-1.12.3 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by ugene-1.12.3 for building => SHA256 Checksum OK for ugene/ugene-1.12.3.tar.gz. => SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf. => SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf. => SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by ugene-1.12.3 for building ===> Extracting for ugene-1.12.3 => SHA256 Checksum OK for ugene/ugene-1.12.3.tar.gz. => SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf. => SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf. => SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf. /bin/cp -p /portdistfiles/ugene/*.pdf /wrkdirs/usr/ports/biology/ugene/work/ugene-1.12.3/data/manuals =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for ugene-1.12.3 ===> Applying FreeBSD patches for ugene-1.12.3 =========================================================================== =================================================== ===> ugene-1.12.3 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/glproto.pc in /usr/ports/x11/glproto ===> Installing existing package /packages/All/glproto-1.4.17.txz Installing glproto-1.4.17... done ===> Returning to build of ugene-1.12.3 ===> ugene-1.12.3 depends on file: /usr/local/libdata/pkgconfig/dri2proto.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/dri2proto.pc in /usr/ports/x11/dri2proto ===> Installing existing package /packages/All/dri2proto-2.8.txz Installing dri2proto-2.8... done ===> Returning to build of ugene-1.12.3 ===> ugene-1.12.3 depends on file: /usr/local/libdata/pkgconfig/xtst.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xtst.pc in /usr/ports/x11/libXtst ===> Installing existing package /packages/All/libXtst-1.2.2.txz Installing libXtst-1.2.2...Installing inputproto-2.3... done Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done Installing libXau-1.0.8...Installing xproto-7.0.25... done done Installing libXdmcp-1.1.1... done Installing libxcb-1.9.3...Installing libpthread-stubs-0.3_4... done Installing libxml2-2.8.0_3... done done done Installing libXext-1.3.2,1...Installing xextproto-7.2.1... done done Installing libXi-1.7.2,1...Installing libXfixes-5.0.1...Installing fixesproto-5.0... done done done Installing recordproto-1.14.2... done done ===> Returning to build of ugene-1.12.3 ===> ugene-1.12.3 depends on file: /usr/local/lib/qt4/libQtGui.so - not found ===> Verifying install for /usr/local/lib/qt4/libQtGui.so in /usr/ports/x11-toolkits/qt4-gui ===> Installing existing package /packages/All/qt4-gui-4.8.5.txz Installing qt4-gui-4.8.5...Installing encodings-1.0.4_1,1...Installing font-util-1.3.0_1... done done Installing fontconfig-2.11.0_1,1...Installing expat-2.1.0... done Installing freetype2-2.5.2... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 3 dirs /usr/local/lib/X11/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /usr/local/lib/X11/fonts/encodings/large: caching, new cache contents: 0 fonts, 0 dirs /usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs /usr/local/lib/X11/fonts/util: caching, new cache contents: 0 fonts, 0 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 3 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded done Installing libICE-1.0.8,1... done Installing libSM-1.2.2,1... done Installing libXcursor-1.1.14...Installing libXrender-0.9.8...Installing renderproto-0.11.1... done done done Installing libXinerama-1.1.3,1...Installing xineramaproto-1.2.1... done done Installing libXrandr-1.4.2...Installing randrproto-1.4.0... done done Installing libXt-1.1.4,1... done Installing png-1.5.17... done Installing qt4-corelib-4.8.5_1...Installing glib-2.36.3_1...Installing python27-2.7.6_1...Installing gettext-0.18.3.1... done done Installing perl5-5.16.3_6...Removing /usr/local/etc/perl5_version... Done. Creating /usr/local/etc/perl5_version... Done. Removing stale symlinks from /usr/bin... Skipping /usr/bin/perl Skipping /usr/bin/perl5 Done. Creating various symlinks in /usr/bin... Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl5 Done. c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RF_SArray_TandemFinder.o _tmp/moc/release/moc_RF_SArray_TandemFinder.cpp In file included from _tmp/moc/release/moc_RF_SArray_TandemFinder.cpp:9: In file included from _tmp/moc/release/../../../src/RF_SArray_TandemFinder.h:25: In file included from ../../include/U2Core/AppResources.h:1: ./../include/U2Core/../../corelibs/U2Core/src/globals/AppResources.h:65:27: warning: field '_maxUse' will be initialized after field 'name' [-Wreorder] : resourceId(id), _maxUse(_maxUse), name(_name), suffix(_suffix), systemUse(0) {} ^ ./../include/U2Core/../../corelibs/U2Core/src/globals/AppResources.h:157:30: warning: unused parameter 'n' [-Wunused-parameter] virtual void release(int n, MemoryLockType lt = TaskMemory) { ^ In file included from _tmp/moc/release/moc_RF_SArray_TandemFinder.cpp:9: In file included from _tmp/moc/release/../../../src/RF_SArray_TandemFinder.h:39: In file included from src/RFBase.h:27: In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1: ./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder] : x(_x), y(_y), l(_len), c(_c), fragment(_fragment) ^ 3 warnings generated. /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RFBase.h -o _tmp/moc/release/moc_RFBase.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RFBase.o _tmp/moc/release/moc_RFBase.cpp In file included from _tmp/moc/release/moc_RFBase.cpp:9: In file included from _tmp/moc/release/../../../src/RFBase.h:27: In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1: ./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder] : x(_x), y(_y), l(_len), c(_c), fragment(_fragment) ^ 1 warning generated. /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RFDiagonal.h -o _tmp/moc/release/moc_RFDiagonal.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RFDiagonal.o _tmp/moc/release/moc_RFDiagonal.cpp In file included from _tmp/moc/release/moc_RFDiagonal.cpp:9: In file included from _tmp/moc/release/../../../src/RFDiagonal.h:25: In file included from src/RFBase.h:27: In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1: ./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder] : x(_x), y(_y), l(_len), c(_c), fragment(_fragment) ^ 1 warning generated. /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RFSArray.h -o _tmp/moc/release/moc_RFSArray.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RFSArray.o _tmp/moc/release/moc_RFSArray.cpp In file included from _tmp/moc/release/moc_RFSArray.cpp:9: In file included from _tmp/moc/release/../../../src/RFSArray.h:31: In file included from src/RFBase.h:27: In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1: ./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder] : x(_x), y(_y), l(_len), c(_c), fragment(_fragment) ^ 1 warning generated. /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RFSArrayWK.h -o _tmp/moc/release/moc_RFSArrayWK.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RFSArrayWK.o _tmp/moc/release/moc_RFSArrayWK.cpp In file included from _tmp/moc/release/moc_RFSArrayWK.cpp:9: In file included from _tmp/moc/release/../../../src/RFSArrayWK.h:27: In file included from src/RFBase.h:27: In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1: ./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder] : x(_x), y(_y), l(_len), c(_c), fragment(_fragment) ^ 1 warning generated. /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RFTaskFactory.h -o _tmp/moc/release/moc_RFTaskFactory.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RFTaskFactory.o _tmp/moc/release/moc_RFTaskFactory.cpp In file included from _tmp/moc/release/moc_RFTaskFactory.cpp:9: In file included from _tmp/moc/release/../../../src/RFTaskFactory.h:25: In file included from ../../include/U2Algorithm/RepeatFinderTaskFactory.h:1: In file included from ../../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderTaskFactory.h:25: ./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder] : x(_x), y(_y), l(_len), c(_c), fragment(_fragment) ^ 1 warning generated. /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/RepeatQuery.h -o _tmp/moc/release/moc_RepeatQuery.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_RepeatQuery.o _tmp/moc/release/moc_RepeatQuery.cpp In file included from _tmp/moc/release/moc_RepeatQuery.cpp:9: In file included from _tmp/moc/release/../../../src/RepeatQuery.h:25: In file included from src/FindRepeatsTask.h:25: In file included from src/RFBase.h:27: In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1: ./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder] : x(_x), y(_y), l(_len), c(_c), fragment(_fragment) ^ In file included from _tmp/moc/release/moc_RepeatQuery.cpp:9: In file included from _tmp/moc/release/../../../src/RepeatQuery.h:25: src/FindRepeatsTask.h:42:71: warning: field 'excludeTandems' will be initialized after field 'filter' [-Wreorder] algo(RFAlgorithm_Auto), nThreads(MAX_PARALLEL_SUBTASKS_AUTO), excludeTandems(false) ^ 2 warnings generated. /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/TandemQuery.h -o _tmp/moc/release/moc_TandemQuery.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_TandemQuery.o _tmp/moc/release/moc_TandemQuery.cpp In file included from _tmp/moc/release/moc_TandemQuery.cpp:9: In file included from _tmp/moc/release/../../../src/TandemQuery.h:25: In file included from src/RF_SArray_TandemFinder.h:25: In file included from ../../include/U2Core/AppResources.h:1: ./../include/U2Core/../../corelibs/U2Core/src/globals/AppResources.h:65:27: warning: field '_maxUse' will be initialized after field 'name' [-Wreorder] : resourceId(id), _maxUse(_maxUse), name(_name), suffix(_suffix), systemUse(0) {} ^ ./../include/U2Core/../../corelibs/U2Core/src/globals/AppResources.h:157:30: warning: unused parameter 'n' [-Wunused-parameter] virtual void release(int n, MemoryLockType lt = TaskMemory) { ^ In file included from _tmp/moc/release/moc_TandemQuery.cpp:9: In file included from _tmp/moc/release/../../../src/TandemQuery.h:25: In file included from src/RF_SArray_TandemFinder.h:39: In file included from src/RFBase.h:27: In file included from ../../include/U2Algorithm/RepeatFinderSettings.h:1: ./../include/U2Algorithm/../../corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h:59:28: warning: field 'c' will be initialized after field 'fragment' [-Wreorder] : x(_x), y(_y), l(_len), c(_c), fragment(_fragment) ^ 3 warnings generated. /usr/local/bin/rcc -name repeat_finder repeat_finder.qrc -o _tmp/rcc/qrc_repeat_finder.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/qrc_repeat_finder.o _tmp/rcc/qrc_repeat_finder.cpp rm -f librepeat_finder.so c++ -Wl,-O1 -pthread -Wl,-rpath,/usr/local/lib/qt4 -shared -o librepeat_finder.so _tmp/obj/release/FindRepeatsDialog.o _tmp/obj/release/FindRepeatsTask.o _tmp/obj/release/FindTandemsDialog.o _tmp/obj/release/RepeatFinderPlugin.o _tmp/obj/release/RepeatFinderTests.o _tmp/obj/release/RepeatWorker.o _tmp/obj/release/RF_SArray_TandemFinder.o _tmp/obj/release/RF_SuffixArray.o _tmp/obj/release/RFBase.o _tmp/obj/release/RFDiagonal.o _tmp/obj/release/RFSArray.o _tmp/obj/release/RFSArrayWK.o _tmp/obj/release/RFTaskFactory.o _tmp/obj/release/RepeatQuery.o _tmp/obj/release/RepeatTest.o _tmp/obj/release/TandemQuery.o _tmp/obj/release/moc_FindRepeatsDialog.o _tmp/obj/release/moc_FindRepeatsTask.o _tmp/obj/release/moc_FindTandemsDialog.o _tmp/obj/release/moc_RepeatFinderPlugin.o _tmp/obj/release/moc_RepeatFinderTests.o _tmp/obj/release/moc_RepeatWorker.o _tmp/obj/release/moc_RF_SArray_TandemFinder.o _tmp/obj/release/moc_RFBase.o _tmp/obj/release/moc_RFDiagonal.o _tmp/obj/r elease/moc_RFSArray.o _tmp/obj/release/moc_RFSArrayWK.o _tmp/obj/release/moc_RFTaskFactory.o _tmp/obj/release/moc_RepeatQuery.o _tmp/obj/release/moc_TandemQuery.o _tmp/obj/release/qrc_repeat_finder.o -L/usr/local/lib/qt4 -L/usr/local/lib -L../../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Remote -lU2Lang -lU2Designer -lQtWebKit -lQtScript -L/usr/local/lib/qt4 -L/usr/local/lib -lQtSvg -lQtXml -lQtGui -lQtNetwork -lQtCore mv -f librepeat_finder.so ../../_release/plugins/ cd src/plugins/test_runner/ && /usr/bin/make -f Makefile release /usr/bin/make -f Makefile.Release /usr/local/bin/uic-qt4 src/ui/Reporter.ui -o _tmp/ui/ui_Reporter.h /usr/local/bin/uic-qt4 src/ui/TestView.ui -o _tmp/ui/ui_TestView.h c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/GTestScriptWrapper.o src/GTestScriptWrapper.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/TestRunnerPlugin.o src/TestRunnerPlugin.cpp In file included from src/TestRunnerPlugin.cpp:22: In file included from src/TestRunnerPlugin.h:25: In file included from ../../include/U2Core/PluginModel.h:1: In file included from ../../include/U2Core/../../corelibs/U2Core/src/globals/PluginModel.h:25: In file included from ../../include/U2Core/global.h:1: In file included from ../../include/U2Core/../../corelibs/U2Core/src/globals/global.h:25: In file included from ../../include/U2Core/U2IdTypes.h:1: In file included from ../../include/U2Core/../../corelibs/U2Core/src/datatype/U2IdTypes.h:27: In file included from ../../include/U2Core/U2Identity.h:1: In file included from ../../include/U2Core/../../corelibs/U2Core/src/datatype/U2Identity.h:25: In file included from /usr/local/include/qt4/QtCore/QHash:1: In file included from /usr/local/include/qt4/QtCore/qhash.h:48: /usr/local/include/qt4/QtCore/qlist.h:431:33: warning: delete called on 'U2::ServiceType' that has virtual functions but non-virtual destructor [-Wdelete-non-virtual-dtor] while(from != to) --to, delete reinterpret_cast(to->v); ^ /usr/local/include/qt4/QtCore/qlist.h:757:5: note: in instantiation of member function 'QList::node_destruct' requested here node_destruct(reinterpret_cast(data->array + data->begin), ^ /usr/local/include/qt4/QtCore/qlist.h:732:9: note: in instantiation of member function 'QList::free' requested here free(d); ^ ./../include/U2Core/../../corelibs/U2Core/src/globals/ServiceModel.h:59:52: note: in instantiation of member function 'QList::~QList' requested here const QList& parentServices = QList(), ^ 1 warning generated. c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/TestViewController.o src/TestViewController.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/TestViewReporter.o src/TestViewReporter.cpp /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/TestRunnerPlugin.h -o _tmp/moc/release/moc_TestRunnerPlugin.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_TestRunnerPlugin.o _tmp/moc/release/moc_TestRunnerPlugin.cpp /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/TestViewController.h -o _tmp/moc/release/moc_TestViewController.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_TestViewController.o _tmp/moc/release/moc_TestViewController.cpp /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include src/TestViewReporter.h -o _tmp/moc/release/moc_TestViewReporter.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_TestViewReporter.o _tmp/moc/release/moc_TestViewReporter.cpp /usr/local/bin/rcc -name test_runner test_runner.qrc -o _tmp/rcc/qrc_test_runner.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/qrc_test_runner.o _tmp/rcc/qrc_test_runner.cpp rm -f libtest_runner.so c++ -Wl,-O1 -pthread -Wl,-rpath,/usr/local/lib/qt4 -shared -o libtest_runner.so _tmp/obj/release/GTestScriptWrapper.o _tmp/obj/release/TestRunnerPlugin.o _tmp/obj/release/TestViewController.o _tmp/obj/release/TestViewReporter.o _tmp/obj/release/moc_TestRunnerPlugin.o _tmp/obj/release/moc_TestViewController.o _tmp/obj/release/moc_TestViewReporter.o _tmp/obj/release/qrc_test_runner.o -L/usr/local/lib/qt4 -L/usr/local/lib -L../../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Remote -lU2Lang -lU2Designer -lQtWebKit -lQtTest -L/usr/local/lib/qt4 -L/usr/local/lib -lQtScript -lQtSvg -lQtXml -lQtGui -lQtNetwork -lQtCore mv -f libtest_runner.so ../../_release/plugins/ cd src/plugins/perf_monitor/ && /usr/bin/make -f Makefile release /usr/bin/make -f Makefile.Release c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/PerfMonitorPlugin.o src/PerfMonitorPlugin.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/PerfMonitorView.o src/PerfMonitorView.cpp /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include src/PerfMonitorPlugin.h -o _tmp/moc/release/moc_PerfMonitorPlugin.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_PerfMonitorPlugin.o _tmp/moc/release/moc_PerfMonitorPlugin.cpp /usr/local/bin/moc-qt4 -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include src/PerfMonitorView.h -o _tmp/moc/release/moc_PerfMonitorView.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/moc_PerfMonitorView.o _tmp/moc/release/moc_PerfMonitorView.cpp /usr/local/bin/rcc -name perf_monitor perf_monitor.qrc -o _tmp/rcc/qrc_perf_monitor.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/qrc_perf_monitor.o _tmp/rcc/qrc_perf_monitor.cpp rm -f libperf_monitor.so c++ -Wl,-O1 -pthread -Wl,-rpath,/usr/local/lib/qt4 -shared -o libperf_monitor.so _tmp/obj/release/PerfMonitorPlugin.o _tmp/obj/release/PerfMonitorView.o _tmp/obj/release/moc_PerfMonitorPlugin.o _tmp/obj/release/moc_PerfMonitorView.o _tmp/obj/release/qrc_perf_monitor.o -L/usr/local/lib/qt4 -L/usr/local/lib -L../../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Remote -lU2Lang -lU2Designer -lQtWebKit -lQtScript -L/usr/local/lib/qt4 -L/usr/local/lib -lQtSvg -lQtXml -lQtGui -lQtNetwork -lQtCore mv -f libperf_monitor.so ../../_release/plugins/ cd src/plugins/smith_waterman/ && /usr/bin/make -f Makefile release /usr/bin/make -f Makefile.Release /usr/local/bin/uic-qt4 src/ui/PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.ui -o _tmp/ui/ui_PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.h c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -msse2 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DSW2_BUILD_WITH_SSE2 -DSW2_BUILD_WITH_OPENCL -DOPENCL_SUPPORT -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I../../corelibs/U2View/_tmp -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/PairAlignSequences.o src/PairAlignSequences.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -msse2 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DSW2_BUILD_WITH_SSE2 -DSW2_BUILD_WITH_OPENCL -DOPENCL_SUPPORT -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I../../corelibs/U2View/_tmp -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/SmithWatermanAlgorithm.o src/SmithWatermanAlgorithm.cpp c++ -c -O2 -pipe -fno-strict-aliasing -std=c++11 -msse2 -O2 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DUGENE_VERSION=1.12.3 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=3 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DSW2_BUILD_WITH_SSE2 -DSW2_BUILD_WITH_OPENCL -DOPENCL_SUPPORT -DQT_NO_DEBUG -DQT_PLUGIN -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -Isrc -I_tmp -I../../include -I../../corelibs/U2View/_tmp -I_tmp/moc/release -I_tmp/ui -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/SmithWatermanAlgorithmSSE2.o src/SmithWatermanAlgorithmSSE2.cpp src/SmithWatermanAlgorithmSSE2.cpp:54:45: error: use of undeclared identifier '_mm_movpi64_epi64'; did you mean '_mm_movpi64_pi64'? inline __m128i xmm_load8(__m64* m) { return _mm_movpi64_epi64(*m); } ^~~~~~~~~~~~~~~~~ _mm_movpi64_pi64 /usr/include/clang/3.3/emmintrin.h:1347:1: note: '_mm_movpi64_pi64' declared here _mm_movpi64_pi64(__m64 __a) ^ src/SmithWatermanAlgorithmSSE2.cpp:63:76: warning: unused parameter 'sm' [-Wunused-parameter] quint64 SmithWatermanAlgorithmSSE2::estimateNeededRamAmount(const SMatrix& sm, QByteArray ^ 1 warning and 1 error generated. *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.12.3/src/plugins/smith_waterman *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.12.3/src/plugins/smith_waterman *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.12.3 *** Error code 1 Stop. make: stopped in /usr/ports/biology/ugene ===> Cleaning for ugene-1.12.3