Date: Thu, 13 Mar 2014 07:41:34 +0000 (UTC) From: Martin Wilke <miwi@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r348042 - in head/biology: garlic mafft mopac mummer muscle paml phylip pymol velvet xmolwt Message-ID: <201403130741.s2D7fYGY060969@svn.freebsd.org>
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Author: miwi Date: Thu Mar 13 07:41:34 2014 New Revision: 348042 URL: http://svnweb.freebsd.org/changeset/ports/348042 QAT: https://qat.redports.org/buildarchive/r348042/ Log: - Convert USE_GMAKE to USES Modified: head/biology/garlic/Makefile head/biology/mafft/Makefile head/biology/mopac/Makefile head/biology/mummer/Makefile head/biology/muscle/Makefile head/biology/paml/Makefile head/biology/phylip/Makefile head/biology/pymol/Makefile head/biology/velvet/Makefile head/biology/xmolwt/Makefile Modified: head/biology/garlic/Makefile ============================================================================== --- head/biology/garlic/Makefile Thu Mar 13 07:40:26 2014 (r348041) +++ head/biology/garlic/Makefile Thu Mar 13 07:41:34 2014 (r348042) @@ -14,7 +14,7 @@ EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} MAINTAINER= maho@FreeBSD.org COMMENT= Molecular viewer, editor, and visualization program -USE_GMAKE= yes +USES= gmake USE_XORG= x11 ALL_TARGET= # empty Modified: head/biology/mafft/Makefile ============================================================================== --- head/biology/mafft/Makefile Thu Mar 13 07:40:26 2014 (r348041) +++ head/biology/mafft/Makefile Thu Mar 13 07:41:34 2014 (r348042) @@ -18,7 +18,7 @@ RUN_DEPENDS= lav2ps:${PORTSDIR}/biology/ WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}-without-extensions BUILD_WRKSRC= ${WRKSRC}/core -USE_GMAKE= yes +USES= gmake MAN1= mafft.1 mafft-homologs.1 Modified: head/biology/mopac/Makefile ============================================================================== --- head/biology/mopac/Makefile Thu Mar 13 07:40:26 2014 (r348041) +++ head/biology/mopac/Makefile Thu Mar 13 07:41:34 2014 (r348042) @@ -14,7 +14,7 @@ COMMENT= Semi-empirical (MNDO, etc.) mol LIB_DEPENDS= libf2c.so:${PORTSDIR}/lang/f2c -USE_GMAKE= yes +USES= gmake USE_AUTOTOOLS= aclocal automake autoconf libtool ACLOCAL_ARGS= -I ${LOCALBASE}/share/aclocal AUTOMAKE_ARGS= --add-missing --copy Modified: head/biology/mummer/Makefile ============================================================================== --- head/biology/mummer/Makefile Thu Mar 13 07:40:26 2014 (r348041) +++ head/biology/mummer/Makefile Thu Mar 13 07:41:34 2014 (r348042) @@ -10,7 +10,7 @@ DISTNAME= MUMmer${PORTVERSION} MAINTAINER= sylvio@FreeBSD.org COMMENT= A modular system for rapid whole genome alignment -USE_GMAKE= yes +USES= gmake PROGRAMS= annotate combineMUMs delta-filter gaps \ mgaps mummer repeat-match show-aligns \ Modified: head/biology/muscle/Makefile ============================================================================== --- head/biology/muscle/Makefile Thu Mar 13 07:40:26 2014 (r348041) +++ head/biology/muscle/Makefile Thu Mar 13 07:41:34 2014 (r348042) @@ -22,7 +22,7 @@ COMMENT= Multiple Sequence Comparison by FETCH_ARGS= -A -USE_GMAKE= yes +USES= gmake USE_DOS2UNIX= *.cpp PLIST_FILES= bin/muscle Modified: head/biology/paml/Makefile ============================================================================== --- head/biology/paml/Makefile Thu Mar 13 07:40:26 2014 (r348041) +++ head/biology/paml/Makefile Thu Mar 13 07:41:34 2014 (r348042) @@ -10,7 +10,7 @@ DISTNAME= ${PORTNAME}${PORTVERSION} MAINTAINER= wen@FreeBSD.org COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) -USE_GMAKE= YES +USES= gmake WRKSRC= ${WRKDIR}/${PORTNAME}44/src MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" Modified: head/biology/phylip/Makefile ============================================================================== --- head/biology/phylip/Makefile Thu Mar 13 07:40:26 2014 (r348041) +++ head/biology/phylip/Makefile Thu Mar 13 07:41:34 2014 (r348042) @@ -19,7 +19,7 @@ BUILD_WRKSRC= ${WRKSRC}/src INSTALL_WRKSRC= ${WRKSRC}/src USE_XORG= x11 xaw xt -USE_GMAKE= yes +USES= gmake MAKEFILE= Makefile.unx MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \ DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \ Modified: head/biology/pymol/Makefile ============================================================================== --- head/biology/pymol/Makefile Thu Mar 13 07:40:26 2014 (r348041) +++ head/biology/pymol/Makefile Thu Mar 13 07:41:34 2014 (r348042) @@ -22,7 +22,7 @@ SVNREVISION= 3978 USE_BZIP2= yes WRKSRC= ${WRKDIR}/pymol-${PORTVERSION} USE_GL= glut glew -USE_GMAKE= yes +USES= gmake USE_PYTHON= yes PLIST_SUB= PYMOL_VER=${VERSION} PYTHON_VER=${PYTHON_VER} Modified: head/biology/velvet/Makefile ============================================================================== --- head/biology/velvet/Makefile Thu Mar 13 07:40:26 2014 (r348041) +++ head/biology/velvet/Makefile Thu Mar 13 07:41:34 2014 (r348042) @@ -11,14 +11,13 @@ EXTRACT_SUFX= .tgz MAINTAINER= mzaki@m.u-tokyo.ac.jp COMMENT= Sequence assembler for very short reads -USE_GMAKE= yes ALL_TARGET= default MAXKMERLENGTH?= 31 VELVET_CATEGORIES?= 2 MAKE_ENV+= MAXKMERLENGTH=${MAXKMERLENGTH} CATEGORIES=${VELVET_CATEGORIES} -USES= perl5 +USES= perl5 gmake USE_PERL5= run BINARIES= velvetg velveth Modified: head/biology/xmolwt/Makefile ============================================================================== --- head/biology/xmolwt/Makefile Thu Mar 13 07:40:26 2014 (r348041) +++ head/biology/xmolwt/Makefile Thu Mar 13 07:41:34 2014 (r348042) @@ -12,7 +12,7 @@ COMMENT= Calculate atom weight and perce OPTIONS_DEFINE= DOCS GTK2 -USE_GMAKE= yes +USES= gmake MAKEFILE= Makefile.gtk ALL_TARGET= gmolwt
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