Date: Sat, 13 Apr 2019 01:08:56 GMT From: pkg-fallout@FreeBSD.org To: dbn@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 112amd64-default][textproc/R-cran-readxl] Failed for R-cran-readxl-1.3.1 in stage Message-ID: <201904130108.x3D18uka065937@beefy9.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: dbn@FreeBSD.org Last committer: dbn@FreeBSD.org Ident: $FreeBSD: head/textproc/R-cran-readxl/Makefile 498297 2019-04-07 16:59:40Z dbn $ Log URL: http://beefy9.nyi.freebsd.org/data/112amd64-default/498784/logs/R-cran-readxl-1.3.1.log Build URL: http://beefy9.nyi.freebsd.org/build.html?mastername=112amd64-default&build=498784 Log: =>> Building textproc/R-cran-readxl build started at Sat Apr 13 01:08:18 UTC 2019 port directory: /usr/ports/textproc/R-cran-readxl package name: R-cran-readxl-1.3.1 building for: FreeBSD 112amd64-default-job-09 11.2-RELEASE-p9 FreeBSD 11.2-RELEASE-p9 amd64 maintained by: dbn@FreeBSD.org Makefile ident: $FreeBSD: head/textproc/R-cran-readxl/Makefile 498297 2019-04-07 16:59:40Z dbn $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300009 Jail OSVERSION: 1102000 Job Id: 09 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1102000 UNAME_v=FreeBSD 11.2-RELEASE-p9 UNAME_r=11.2-RELEASE-p9 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/112amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/112amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=112amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/112amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- dbn@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/textproc/R-cran-readxl/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/textproc/R-cran-readxl/work HOME=/wrkdirs/usr/ports/textproc/R-cran-readxl/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/textproc/R-cran-readxl/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/textproc/R-cran-readxl/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/textproc/R-cran-readxl/work HOME=/wrkdirs/usr/ports/textproc/R-cran-readxl/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/textproc/R-cran-readxl/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/readxl OSREL=11.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/readxl" EXAMPLESDIR="share/examples/readxl" DATADIR="share/readxl" WWWDIR="www/readxl" ETCDIR="etc/readxl" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/readxl DOCSDIR=/usr/local/share/doc/readxl EXAMPLESDIR=/usr/local/share/examples/readxl WWWDIR=/usr/local/www/readxl ETCDIR=/usr/local/etc/readxl --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=11.2-RELEASE-p9 OSREL=11.2 OSVERSION=1102000 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-readxl-1.3.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [112amd64-default-job-09] Installing pkg-1.10.5_5... [112amd64-default-job-09] Extracting pkg-1.10.5_5: .......... done ===> R-cran-readxl-1.3.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-readxl-1.3.1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-readxl-1.3.1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-readxl-1.3.1 for building => SHA256 Checksum OK for readxl_1.3.1.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-readxl-1.3.1 for building ===> Extracting for R-cran-readxl-1.3.1 => SHA256 Checksum OK for readxl_1.3.1.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-readxl-1.3.1 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-readxl-1.3.1 depends on package: R-cran-knitr>0 - not found ===> Installing existing package /packages/All/R-cran-knitr-1.20_1.txz [112amd64-default-job-09] Installing R-cran-knitr-1.20_1... [112amd64-default-job-09] `-- Installing R-3.5.3_2... [112amd64-default-job-09] | `-- Installing cairo-1.16.0,2... [112amd64-default-job-09] | | `-- Installing fontconfig-2.12.6,1... [112amd64-default-job-09] | | `-- Installing expat-2.2.6_1... [112amd64-default-job-09] | | `-- Extracting expat-2.2.6_1: .......... done [112amd64-default-job-09] | | `-- Installing freetype2-2.9.1... [112amd64-default-job-09] | | `-- Extracting freetype2-2.9.1: .......... done [112amd64-default-job-09] | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory <snip> [112amd64-default-job-09] | `-- Extracting tk86-8.6.9_1: .......... done [112amd64-default-job-09] `-- Extracting R-3.5.3_2: .......... done [112amd64-default-job-09] `-- Installing R-cran-evaluate-0.12_1... [112amd64-default-job-09] `-- Extracting R-cran-evaluate-0.12_1: .......... done [112amd64-default-job-09] `-- Installing R-cran-highr-0.7_1... [112amd64-default-job-09] `-- Extracting R-cran-highr-0.7_1: .......... done [112amd64-default-job-09] `-- Installing R-cran-markdown-0.8_3... [112amd64-default-job-09] | `-- Installing R-cran-mime-0.6_1... [112amd64-default-job-09] | `-- Extracting R-cran-mime-0.6_1: .......... done [112amd64-default-job-09] `-- Extracting R-cran-markdown-0.8_3: .......... done [112amd64-default-job-09] `-- Installing R-cran-stringr-1.3.1_1... [112amd64-default-job-09] | `-- Installing R-cran-glue-1.3.0_1... [112amd64-default-job-09] | `-- Extracting R-cran-glue-1.3.0_1: .......... done [112amd64-default-job-09] | `-- Installing R-cran-magrittr-1.5_2... [112amd64-default-job-09] | `-- Extracting R-cran-magrittr-1.5_2: .......... done [112amd64-default-job-09] | `-- Installing R-cran-stringi-1.2.4_3... [112amd64-default-job-09] | `-- Extracting R-cran-stringi-1.2.4_3: .......... done [112amd64-default-job-09] `-- Extracting R-cran-stringr-1.3.1_1: .......... done [112amd64-default-job-09] `-- Installing R-cran-yaml-2.2.0_1... [112amd64-default-job-09] `-- Extracting R-cran-yaml-2.2.0_1: .......... done [112amd64-default-job-09] Extracting R-cran-knitr-1.20_1: .......... done Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from python36-3.6.8_2: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from ca_root_nss-3.43: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from gcc8-8.3.0_1: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.26_1: This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. Message from dejavu-2.37_1: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-cran-readxl-1.3.1 depends on package: R-cran-knitr>0 - found ===> Returning to build of R-cran-readxl-1.3.1 ===> R-cran-readxl-1.3.1 depends on file: /usr/local/bin/R - found ===> R-cran-readxl-1.3.1 depends on executable: gfortran8 - found ===> R-cran-readxl-1.3.1 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-readxl-1.3.1 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-readxl-1.3.1 depends on package: R-cran-Rcpp>=0.12.18 - not found ===> Installing existing package /packages/All/R-cran-Rcpp-1.0.0_1.txz [112amd64-default-job-09] Installing R-cran-Rcpp-1.0.0_1... [112amd64-default-job-09] Extracting R-cran-Rcpp-1.0.0_1: .......... done ===> R-cran-readxl-1.3.1 depends on package: R-cran-Rcpp>=0.12.18 - found ===> Returning to build of R-cran-readxl-1.3.1 ===> R-cran-readxl-1.3.1 depends on package: R-cran-tibble>=1.3.1 - not found ===> Installing existing package /packages/All/R-cran-tibble-2.0.1.txz [112amd64-default-job-09] Installing R-cran-tibble-2.0.1... [112amd64-default-job-09] `-- Installing R-cran-cli-1.0.1_1... [112amd64-default-job-09] | `-- Installing R-cran-assertthat-0.2.1... [112amd64-default-job-09] | `-- Extracting R-cran-assertthat-0.2.1: .......... done [112amd64-default-job-09] | `-- Installing R-cran-crayon-1.3.4_2... [112amd64-default-job-09] | `-- Extracting R-cran-crayon-1.3.4_2: .......... done [112amd64-default-job-09] `-- Extracting R-cran-cli-1.0.1_1: .......... done [112amd64-default-job-09] `-- Installing R-cran-pillar-1.3.1... [112amd64-default-job-09] | `-- Installing R-cran-fansi-0.4.0_1... [112amd64-default-job-09] | `-- Extracting R-cran-fansi-0.4.0_1: .......... done [112amd64-default-job-09] | `-- Installing R-cran-rlang-0.3.1... [112amd64-default-job-09] | `-- Extracting R-cran-rlang-0.3.1: .......... done [112amd64-default-job-09] | `-- Installing R-cran-utf8-1.1.4_1... [112amd64-default-job-09] | `-- Extracting R-cran-utf8-1.1.4_1: .......... done [112amd64-default-job-09] `-- Extracting R-cran-pillar-1.3.1: .......... done [112amd64-default-job-09] `-- Installing R-cran-pkgconfig-2.0.2_1... [112amd64-default-job-09] `-- Extracting R-cran-pkgconfig-2.0.2_1: .......... done [112amd64-default-job-09] Extracting R-cran-tibble-2.0.1: .......... done Message from R-cran-crayon-1.3.4_2: ===> NOTICE: The R-cran-crayon port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> R-cran-readxl-1.3.1 depends on package: R-cran-tibble>=1.3.1 - found ===> Returning to build of R-cran-readxl-1.3.1 ===> R-cran-readxl-1.3.1 depends on package: R-cran-cellranger>0 - not found ===> Installing existing package /packages/All/R-cran-cellranger-1.1.0_1.txz [112amd64-default-job-09] Installing R-cran-cellranger-1.1.0_1... [112amd64-default-job-09] `-- Installing R-cran-rematch-1.0.1_1... [112amd64-default-job-09] `-- Extracting R-cran-rematch-1.0.1_1: .......... done [112amd64-default-job-09] Extracting R-cran-cellranger-1.1.0_1: .......... done ===> R-cran-readxl-1.3.1 depends on package: R-cran-cellranger>0 - found ===> Returning to build of R-cran-readxl-1.3.1 ===> R-cran-readxl-1.3.1 depends on file: /usr/local/bin/R - found ===> R-cran-readxl-1.3.1 depends on executable: gfortran8 - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-readxl-1.3.1 ===> Generating temporary packing list ERROR: dependency 'progress' is not available for package 'readxl' * removing '/wrkdirs/usr/ports/textproc/R-cran-readxl/work/stage/usr/local/lib/R/library/readxl' *** Error code 1 Stop. make: stopped in /usr/ports/textproc/R-cran-readxl
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