From owner-freebsd-ports-bugs@freebsd.org Wed Apr 1 17:05:54 2020 Return-Path: Delivered-To: freebsd-ports-bugs@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 156DC279ACB for ; Wed, 1 Apr 2020 17:05:54 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mailman.nyi.freebsd.org (unknown [127.0.1.3]) by mx1.freebsd.org (Postfix) with ESMTP id 48ssz31Fb6z3NR2 for ; Wed, 1 Apr 2020 17:05:51 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: by mailman.nyi.freebsd.org (Postfix) id B8493279AB5; Wed, 1 Apr 2020 17:05:42 +0000 (UTC) Delivered-To: ports-bugs@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id AF0B9279AB3 for ; Wed, 1 Apr 2020 17:05:42 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 48ssyt2LCTz3NNJ for ; Wed, 1 Apr 2020 17:05:42 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2610:1c1:1:606c::50:1d]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 3165548B for ; Wed, 1 Apr 2020 16:23:26 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org ([127.0.1.5]) by kenobi.freebsd.org (8.15.2/8.15.2) with ESMTP id 031GNPa0043195 for ; Wed, 1 Apr 2020 16:23:25 GMT (envelope-from bugzilla-noreply@freebsd.org) Received: (from www@localhost) by kenobi.freebsd.org (8.15.2/8.15.2/Submit) id 031GNPwC043180 for ports-bugs@FreeBSD.org; Wed, 1 Apr 2020 16:23:25 GMT (envelope-from bugzilla-noreply@freebsd.org) X-Authentication-Warning: kenobi.freebsd.org: www set sender to bugzilla-noreply@freebsd.org using -f From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: [Bug 245240] biology/kallisto: fix build on GCC architectures Date: Wed, 01 Apr 2020 16:23:25 +0000 X-Bugzilla-Reason: AssignedTo X-Bugzilla-Type: new X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Only Me X-Bugzilla-Who: pkubaj@FreeBSD.org X-Bugzilla-Status: New X-Bugzilla-Resolution: X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: jwb@freebsd.org X-Bugzilla-Flags: maintainer-feedback? X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform op_sys bug_status bug_severity priority component assigned_to reporter flagtypes.name Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated MIME-Version: 1.0 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 01 Apr 2020 17:05:54 -0000 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D245240 Bug ID: 245240 Summary: biology/kallisto: fix build on GCC architectures Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Only Me Priority: --- Component: Individual Port(s) Assignee: jwb@freebsd.org Reporter: pkubaj@FreeBSD.org Flags: maintainer-feedback?(jwb@freebsd.org) Assignee: jwb@freebsd.org kallisto 0.46.2 fails to build with GCC: In file included from /wrkdirs/usr/ports/biology/kallisto/work/kallisto-0.46.2/src/Bootstrap.cpp:= 1: /wrkdirs/usr/ports/biology/kallisto/work/kallisto-0.46.2/src/Bootstrap.h:57= :106: error: 'uint' has not been declared 57 | const std::vector& fld, const std::vector& preBias, const std::vector& postBias, uint compression, size_t index_version, |=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20= =20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20= =20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20 ^~~~ Including sys/types.h is necessary. Please MFH after commit since new quarterly is imminent. --=20 You are receiving this mail because: You are the assignee for the bug.=