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Date:      Fri, 16 Apr 2021 11:11:52 GMT
From:      pkg-fallout@FreeBSD.org
To:        yuri@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - 122i386-default][biology/ngs-sdk] Failed for ngs-sdk-2.11.0_2 in stage
Message-ID:  <202104161111.13GBBqR5064258@beefy5.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: @FreeBSD.org
Ident:          Makefile ident: 
Log URL:        http://beefy5.nyi.freebsd.org/data/122i386-default/f43705587fa6/logs/ngs-sdk-2.11.0_2.log
Build URL:      http://beefy5.nyi.freebsd.org/build.html?mastername=122i386-default&build=f43705587fa6
Log:

=>> Building biology/ngs-sdk
build started at Fri Apr 16 11:10:16 UTC 2021
port directory: /usr/ports/biology/ngs-sdk
package name: ngs-sdk-2.11.0_2
building for: FreeBSD 122i386-default-job-08 12.2-RELEASE-p6 FreeBSD 12.2-RELEASE-p6 i386
maintained by: yuri@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1400003
Jail OSVERSION: 1202000
Job Id: 08

---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1202000
UNAME_v=FreeBSD 12.2-RELEASE-p6
UNAME_r=12.2-RELEASE-p6
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
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SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/122i386-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=122i386-default
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OLDPWD=/usr/local/poudriere/data/.m/122i386-default/ref/.p
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POUDRIEREPATH=/usr/local/bin/poudriere
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PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build"
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=12.2 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1  PERL_VER=5.32  PERL5_MAN1=lib/perl5/site_perl/man/man1  PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/ngs"  EXAMPLESDIR="share/examples/ngs"  DATADIR="share/ngs"  WWWDIR="www/ngs"  ETCDIR="etc/ngs"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/ngs DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs  WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin
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ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=12.2-RELEASE-p6
OSREL=12.2
OSVERSION=1202000
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ngs-sdk-2.11.0_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.3.txz
[122i386-default-job-08] Installing pkg-1.16.3...
[122i386-default-job-08] Extracting pkg-1.16.3: .......... done
===>   ngs-sdk-2.11.0_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ngs-sdk-2.11.0_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building
=> SHA256 Checksum OK for ncbi-ngs-2.11.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.11.0_2 for building
===>  Extracting for ngs-sdk-2.11.0_2
=> SHA256 Checksum OK for ncbi-ngs-2.11.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for ngs-sdk-2.11.0_2
===>  Applying FreeBSD patches for ngs-sdk-2.11.0_2 from /usr/ports/biology/ngs-sdk/files
===========================================================================
=======================<phase: build-depends  >============================
===>   ngs-sdk-2.11.0_2 depends on package: gmake>=4.3 - not found
===>   Installing existing package /packages/All/gmake-4.3_2.txz
[122i386-default-job-08] Installing gmake-4.3_2...
[122i386-default-job-08] `-- Installing gettext-runtime-0.21...
[122i386-default-job-08] |   `-- Installing indexinfo-0.3.1...
[122i386-default-job-08] |   `-- Extracting indexinfo-0.3.1: .... done
[122i386-default-job-08] `-- Extracting gettext-runtime-0.21: .......... done
[122i386-default-job-08] Extracting gmake-4.3_2: .......... done
===>   ngs-sdk-2.11.0_2 depends on package: gmake>=4.3 - found
===>   Returning to build of ngs-sdk-2.11.0_2
===>   ngs-sdk-2.11.0_2 depends on package: perl5>=5.32.r0<5.33 - not found
===>   Installing existing package /packages/All/perl5-5.32.1_1.txz
[122i386-default-job-08] Installing perl5-5.32.1_1...
[122i386-default-job-08] Extracting perl5-5.32.1_1: .......... done
===>   ngs-sdk-2.11.0_2 depends on package: perl5>=5.32.r0<5.33 - found
<snip>
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-python.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_FragmentIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PackageItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/
 rel/obj/language/python/py_PileupEventIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_PileupIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReadIteratorItf.pic.o /wrkdirs/usr/ports
 /biology/ngs-sdk/work/ngs-2.11.0/build/ngs-s!
 dk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/language/python/py_StringItf.pic.o
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language/python'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/language'
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch'
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-disp.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sd
 k/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/PackageItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/StringItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/VTable.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/dispatch/ErrBlock.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/di
 spatch/ErrorMsg.pic.o
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/dispatch'
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter'
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/ngs/unix/i386 -MD -arch i386
clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ng
 s-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/StringItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrorMsg.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/adapter/ErrBlock.pic.o
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a.2
ln -s libngs-adapt-c++.a.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a.2
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a
ln -s libngs-adapt-c++.a.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++.a  
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++-static.a
ln -s libngs-adapt-c++.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-adapt-c++-static.a  
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk/adapter'
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk'
rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++
( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-c++.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-bind-c++\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++/manifest )
rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp
( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-disp.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-disp\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp/manifest )
( ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a.2.11.0 `cat /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-c++/manifest /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-disp/manifest` )
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a.2
ln -s libngs-c++.a.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a.2
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a
ln -s libngs-c++.a.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++.a
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++-static.a
ln -s libngs-c++.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-c++-static.a
rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java
( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-java.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-bind-java\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java/manifest )
rm -rf /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python
mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python
( cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python; ar x /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-python.a; ar t /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/wrkdirs\/usr\/ports\/biology\/ngs-sdk\/work\/ngs-2.11.0\/build\/ngs-sdk\/FreeBSD\/clang\/i386\/rel\/obj\/ngs-bind-python\/\1/' > /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python/manifest )
clang++ -mmacosx-version-min=10.10 -arch i386 -DNDEBUG -O3 -shared -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so.2.11.0 -install_name /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib32/libngs-sdk.so.2 -compatibility_version 2.11 -current_version 2.11.0 -flat_namespace -undefined suppress `cat /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-java/manifest /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/obj/ngs-bind-python/manifest` -L/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/ilib -lngs-disp
clang++: warning: argument unused during compilation: '-arch i386' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-install_name /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib32/libngs-sdk.so.2' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-compatibility_version 2.11' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-current_version 2.11.0' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-flat_namespace' [-Wunused-command-line-argument]
clang++: warning: argument unused during compilation: '-undefined suppress' [-Wunused-command-line-argument]
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so.2
ln -s libngs-sdk.so.2.11.0 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so.2
rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so
ln -s libngs-sdk.so.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/i386/rel/lib/libngs-sdk.so
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk'
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0'
===========================================================================
=======================<phase: run-depends    >============================
===========================================================================
=======================<phase: stage          >============================
===>  Staging for ngs-sdk-2.11.0_2
===>   Generating temporary packing list
cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/ngs-sdk && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) &&  /usr/bin/find -Ed $1 $3 \(   -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} +  -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE ngs /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/include
/bin/rm -f -r /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/include/ngs/win
cd /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) &&  /usr/bin/find -Ed $1 $3 \(   -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} +  -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib
cd: /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.0/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib: No such file or directory
*** Error code 2

Stop.
make: stopped in /usr/ports/biology/ngs-sdk



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