Date: Sun, 6 Apr 2008 04:49:06 +0000 (UTC) From: Rong-En Fan <rafan@FreeBSD.org> To: ports-committers@FreeBSD.org, cvs-ports@FreeBSD.org, cvs-all@FreeBSD.org Subject: cvs commit: ports/biology Makefile ports/biology/mapm3 Makefile distinfo pkg-descr pkg-plist ports/biology/mapm3/files patch-Makefile patch-lib-iolib.c patch-lib-iolib.h patch-lib-makehelp.c patch-lib-shell.c patch-lib-syscode.c ... Message-ID: <200804060449.m364n6Mn011792@repoman.freebsd.org>
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rafan 2008-04-06 04:49:06 UTC
FreeBSD ports repository
Modified files:
biology Makefile
Added files:
biology/mapm3 Makefile distinfo pkg-descr pkg-plist
biology/mapm3/files patch-Makefile patch-lib-iolib.c
patch-lib-iolib.h patch-lib-makehelp.c
patch-lib-shell.c patch-lib-syscode.c
patch-lib-system.h patch-mapm-chroms.c
patch-mapm-database.c patch-mapm-info.c
patch-mapm-map_info.h patch-mapm-mapm.h
patch-mapm-maps.c patch-mapm-npt_cmds.c
patch-mapm-print.c patch-mapm-reader.c
patch-mapm-state.c patch-mapm-sys_cmds.c
patch-mapm-two_cmds.c patch-quant-qcmds.c
patch-quant-qraw.c patch-sun-xmapmaker
patch-sun-xqtl
Log:
MAPMAKER/EXP is a linkage analysis package designed to help construct primary
linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
performs full multipoint linkage analysis (simultaneous estimation of all
recombination fractions from the primary data) for dominant, recessive, and co-
dominant (e.g. RFLP-like) markers. MAPMAKER/EXP is an experimental-cross-only
successor to the original MAPMAKER program.
MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
genes controlling polygenic quantitative traits in F2 intercrosses and BC1
backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
can be found in the technical report (included with MAPMAKER/QTL).
WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
PR: ports/122452
Submitted by: Tassilo Philipp <tphilipp at potion-studios.com>
Revision Changes Path
1.95 +1 -0 ports/biology/Makefile
1.1 +26 -0 ports/biology/mapm3/Makefile (new)
1.1 +3 -0 ports/biology/mapm3/distinfo (new)
1.1 +54 -0 ports/biology/mapm3/files/patch-Makefile (new)
1.1 +11 -0 ports/biology/mapm3/files/patch-lib-iolib.c (new)
1.1 +78 -0 ports/biology/mapm3/files/patch-lib-iolib.h (new)
1.1 +81 -0 ports/biology/mapm3/files/patch-lib-makehelp.c (new)
1.1 +81 -0 ports/biology/mapm3/files/patch-lib-shell.c (new)
1.1 +43 -0 ports/biology/mapm3/files/patch-lib-syscode.c (new)
1.1 +71 -0 ports/biology/mapm3/files/patch-lib-system.h (new)
1.1 +29 -0 ports/biology/mapm3/files/patch-mapm-chroms.c (new)
1.1 +11 -0 ports/biology/mapm3/files/patch-mapm-database.c (new)
1.1 +41 -0 ports/biology/mapm3/files/patch-mapm-info.c (new)
1.1 +11 -0 ports/biology/mapm3/files/patch-mapm-map_info.h (new)
1.1 +11 -0 ports/biology/mapm3/files/patch-mapm-mapm.h (new)
1.1 +72 -0 ports/biology/mapm3/files/patch-mapm-maps.c (new)
1.1 +11 -0 ports/biology/mapm3/files/patch-mapm-npt_cmds.c (new)
1.1 +11 -0 ports/biology/mapm3/files/patch-mapm-print.c (new)
1.1 +191 -0 ports/biology/mapm3/files/patch-mapm-reader.c (new)
1.1 +18 -0 ports/biology/mapm3/files/patch-mapm-state.c (new)
1.1 +47 -0 ports/biology/mapm3/files/patch-mapm-sys_cmds.c (new)
1.1 +16 -0 ports/biology/mapm3/files/patch-mapm-two_cmds.c (new)
1.1 +93 -0 ports/biology/mapm3/files/patch-quant-qcmds.c (new)
1.1 +53 -0 ports/biology/mapm3/files/patch-quant-qraw.c (new)
1.1 +9 -0 ports/biology/mapm3/files/patch-sun-xmapmaker (new)
1.1 +9 -0 ports/biology/mapm3/files/patch-sun-xqtl (new)
1.1 +13 -0 ports/biology/mapm3/pkg-descr (new)
1.1 +6 -0 ports/biology/mapm3/pkg-plist (new)
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