From owner-freebsd-ports-bugs@FreeBSD.ORG Thu May 23 18:20:00 2013 Return-Path: Delivered-To: freebsd-ports-bugs@smarthost.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.FreeBSD.org [8.8.178.115]) by hub.freebsd.org (Postfix) with ESMTP id 874A41ED for ; Thu, 23 May 2013 18:20:00 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:1900:2254:206c::16:87]) by mx1.freebsd.org (Postfix) with ESMTP id 53E6B886 for ; Thu, 23 May 2013 18:20:00 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.7/8.14.7) with ESMTP id r4NIK0Pr088684 for ; Thu, 23 May 2013 18:20:00 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.7/8.14.7/Submit) id r4NIK0H9088683; Thu, 23 May 2013 18:20:00 GMT (envelope-from gnats) Resent-Date: Thu, 23 May 2013 18:20:00 GMT Resent-Message-Id: <201305231820.r4NIK0H9088683@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Andrej Zverev Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by hub.freebsd.org (Postfix) with ESMTP id 0C09EB8D for ; Thu, 23 May 2013 18:10:07 +0000 (UTC) (envelope-from az@sunner.semmy.ru) Received: from sunner.semmy.ru (sunner.semmy.ru [IPv6:2a00:14d0:0:20::3]) by mx1.freebsd.org (Postfix) with ESMTP id B82F67B6 for ; Thu, 23 May 2013 18:10:06 +0000 (UTC) Received: from az by sunner.semmy.ru with local (Exim 4.80.1 (FreeBSD)) (envelope-from ) id 1UfZxl-000436-PY for FreeBSD-gnats-submit@freebsd.org; Thu, 23 May 2013 22:10:05 +0400 Message-Id: Date: Thu, 23 May 2013 22:10:05 +0400 From: Andrej Zverev Sender: Andrej Zverev To: FreeBSD-gnats-submit@freebsd.org X-Send-Pr-Version: 3.113 Subject: ports/178877: [patch] biology/p5-bioperl X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.14 Precedence: list Reply-To: Andrej Zverev List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 23 May 2013 18:20:00 -0000 >Number: 178877 >Category: ports >Synopsis: [patch] biology/p5-bioperl >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Thu May 23 18:20:00 UTC 2013 >Closed-Date: >Last-Modified: >Originator: Andrej Zverev >Release: >Organization: >Environment: >Description: - Avoid of using SITE_PERL - Remove depend on DB_File.pm since it part of perl distribution >How-To-Repeat: >Fix: --- patch.diff begins here --- Index: Makefile =================================================================== --- Makefile (revision 318886) +++ Makefile (working copy) @@ -3,7 +3,7 @@ PORTNAME= bioperl PORTVERSION= 1.6.1 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= biology perl5 MASTER_SITES= http://bioperl.org/DIST/ \ CPAN @@ -13,8 +13,7 @@ MAINTAINER= wen@FreeBSD.org COMMENT= A collection of Perl modules for bioinformatics -BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/${PERL_VERSION}/Text/Wrap.pm:${PORTSDIR}/lang/${PERL_PORT} \ - ${LOCALBASE}/lib/perl5/${PERL_VERSION}/${PERL_ARCH}/DB_File.pm:${PORTSDIR}/lang/${PERL_PORT} \ +BUILD_DEPENDS= p5-Text-Tabs+Wrap>=0:${PORTSDIR}/textproc/p5-Text-Tabs+Wrap \ p5-Bio-ASN1-EntrezGene>=0:${PORTSDIR}/biology/p5-Bio-ASN1-EntrezGene \ p5-Class-AutoClass>=0:${PORTSDIR}/devel/p5-Class-AutoClass \ p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \ --- patch.diff ends here --- >Release-Note: >Audit-Trail: >Unformatted: