From owner-dev-commits-ports-all@freebsd.org Tue Aug 17 21:30:16 2021 Return-Path: Delivered-To: dev-commits-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 4635F66BCD0; Tue, 17 Aug 2021 21:30:16 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Gq4201FSXz4SmX; Tue, 17 Aug 2021 21:30:16 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 130EA25116; Tue, 17 Aug 2021 21:30:16 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 17HLUFs6096571; Tue, 17 Aug 2021 21:30:15 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 17HLUF94096565; Tue, 17 Aug 2021 21:30:15 GMT (envelope-from git) Date: Tue, 17 Aug 2021 21:30:15 GMT Message-Id: <202108172130.17HLUF94096565@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 10875d93bb72 - main - biology/py-python-libsbml: New port: LibSBML Python API MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 10875d93bb728801a61c3d78a1e140718fd0cfdf Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commit messages for all branches of the ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 17 Aug 2021 21:30:16 -0000 The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=10875d93bb728801a61c3d78a1e140718fd0cfdf commit 10875d93bb728801a61c3d78a1e140718fd0cfdf Author: Yuri Victorovich AuthorDate: 2021-08-17 21:21:57 +0000 Commit: Yuri Victorovich CommitDate: 2021-08-17 21:30:07 +0000 biology/py-python-libsbml: New port: LibSBML Python API --- biology/Makefile | 1 + biology/py-python-libsbml/Makefile | 21 +++++++++++++++++++++ biology/py-python-libsbml/distinfo | 3 +++ biology/py-python-libsbml/pkg-descr | 4 ++++ biology/py-python-libsbml/pkg-plist | 3 +++ 5 files changed, 32 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index 9f1aa3be4cd9..d02ab1ac20eb 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -151,6 +151,7 @@ SUBDIR += py-pandas-charm SUBDIR += py-pyfaidx SUBDIR += py-pysam + SUBDIR += py-python-libsbml SUBDIR += py-resdk SUBDIR += py-scikit-bio SUBDIR += py-xenaPython diff --git a/biology/py-python-libsbml/Makefile b/biology/py-python-libsbml/Makefile new file mode 100644 index 000000000000..2acf5ef53d00 --- /dev/null +++ b/biology/py-python-libsbml/Makefile @@ -0,0 +1,21 @@ +PORTNAME= python-libsbml +DISTVERSION= 5.19.0 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= LibSBML Python API + +LICENSE= LGPL21 + +BUILD_DEPENDS= cmake:devel/cmake \ + swig:devel/swig + +USES= python:3.6+ +USE_PYTHON= autoplist distutils # autoplist produces incomplete plist, missing files are in pkg-plist. Reported to the upstream author fbergman@caltech.edu on 2021-08-17 + +post-install: + @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/libsbml/_libsbml.cpython-38.so + +.include diff --git a/biology/py-python-libsbml/distinfo b/biology/py-python-libsbml/distinfo new file mode 100644 index 000000000000..6f7129d3cedb --- /dev/null +++ b/biology/py-python-libsbml/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1629231482 +SHA256 (python-libsbml-5.19.0.tar.gz) = 87596017aa76c1284e83247593fe999ab7ba9a84e7488bcf0434b01277858f86 +SIZE (python-libsbml-5.19.0.tar.gz) = 36842483 diff --git a/biology/py-python-libsbml/pkg-descr b/biology/py-python-libsbml/pkg-descr new file mode 100644 index 000000000000..22c87a0470a3 --- /dev/null +++ b/biology/py-python-libsbml/pkg-descr @@ -0,0 +1,4 @@ +Python binding for libsbml - Systems Biology Markup Language (SBML) read/write +library. + +WWW: http://sbml.org/Main_Page diff --git a/biology/py-python-libsbml/pkg-plist b/biology/py-python-libsbml/pkg-plist new file mode 100644 index 000000000000..092f79185065 --- /dev/null +++ b/biology/py-python-libsbml/pkg-plist @@ -0,0 +1,3 @@ +%%PYTHON_SITELIBDIR%%/libsbml/__init__.py +%%PYTHON_SITELIBDIR%%/libsbml/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/libsbml/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc