Date: Thu, 4 Mar 2021 07:39:16 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 114amd64-default][science/votca] Failed for votca-1.6.3 in build Message-ID: <202103040739.1247dG30039694@beefy9.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/science/votca/Makefile 558351 2020-12-18 05:40:58Z yuri $ Log URL: http://beefy9.nyi.freebsd.org/data/114amd64-default/567284/logs/votca-1.6.3.log Build URL: http://beefy9.nyi.freebsd.org/build.html?mastername=114amd64-default&build=567284 Log: =>> Building science/votca build started at Thu Mar 4 07:31:31 UTC 2021 port directory: /usr/ports/science/votca package name: votca-1.6.3 building for: FreeBSD 114amd64-default-job-13 11.4-RELEASE-p8 FreeBSD 11.4-RELEASE-p8 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/votca/Makefile 558351 2020-12-18 05:40:58Z yuri $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1300134 Jail OSVERSION: 1104001 Job Id: 13 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1104001 UNAME_v=FreeBSD 11.4-RELEASE-p8 UNAME_r=11.4-RELEASE-p8 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/114amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/114amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=114amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/114amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for votca-1.6.3: APPS=on: Build applications DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/votca/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" APPS="" NO_APPS="@comment " DOCS="" NO_DOCS="@comment " TEXMFDIR="share/texmf" TEXMFDISTDIR="share/texmf-dist" TEXMFLOCALDIR="share/texmf-local" TEXMFVARDIR="share/texmf-var" TEXMFCONFIGDIR="share/texmf-config" FMTUTIL_CNF="share/texmf-config/web2c/fmtutil.cnf" CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd11 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_EXT_SUFFIX= PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=11.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/votca" EXAMPLESDIR="share/examples/votca" DATADIR="share/votca" WWWDIR="www/votca" ETCDIR="etc/votca" --End PLIST_SUB-- --SUB_LIST-- APPS="" NO_APPS="@comment " DOCS="" NO_DOCS="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/votca DOCSDIR=/usr/local/share/doc/votca EXAMPLESDIR=/usr/local/share/examples/votca WWWDIR=/usr/local/www/votca ETCDIR=/usr/local/etc/votca --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=11.4-RELEASE-p8 OSREL=11.4 OSVERSION=1104001 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License APACHE20 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> votca-1.6.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.3.txz [114amd64-default-job-13] Installing pkg-1.16.3... [114amd64-default-job-13] Extracting pkg-1.16.3: .......... done ===> votca-1.6.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of votca-1.6.3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-1.6.3 for building =========================================================================== =======================<phase: checksum >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-1.6.3 for building => SHA256 Checksum OK for votca-votca-v1.6.3_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-efaa34c7f148c85493a3d15bf8cc800918d7111f_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-manual-16d27d55248fe7d2f3d78dcb2483f723ba3e38fe_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-tutorials-6819ffd5735cd253d55beffe1be61f0d49e6dd5e_GH0.tar.gz. => SHA256 Checksum OK for votca-csgapps-4e40d2b92a5d33db2d750efa1dacdf1d502e7447_GH0.tar.gz. => SHA256 Checksum OK for votca-tools-377b8487df371862de793dfe38287f4ce1cbafb8_GH0.tar.gz. => SHA256 Checksum OK for votca-xtp-5879ed8d006471d37cc0b19dcbb557eac60cf898_GH0.tar.gz. => SHA256 Checksum OK for votca-xtp-tutorials-b4b25d570fef22b8806e2efb2fdcc844ad8acb7e_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-1.6.3 for building ===> Extracting for votca-1.6.3 => SHA256 Checksum OK for votca-votca-v1.6.3_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-efaa34c7f148c85493a3d15bf8cc800918d7111f_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-manual-16d27d55248fe7d2f3d78dcb2483f723ba3e38fe_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-tutorials-6819ffd5735cd253d55beffe1be61f0d49e6dd5e_GH0.tar.gz. => SHA256 Checksum OK for votca-csgapps-4e40d2b92a5d33db2d750efa1dacdf1d502e7447_GH0.tar.gz. => SHA256 Checksum OK for votca-tools-377b8487df371862de793dfe38287f4ce1cbafb8_GH0.tar.gz. => SHA256 Checksum OK for votca-xtp-5879ed8d006471d37cc0b19dcbb557eac60cf898_GH0.tar.gz. => SHA256 Checksum OK for votca-xtp-tutorials-b4b25d570fef22b8806e2efb2fdcc844ad8acb7e_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for votca-1.6.3 =========================================================================== =======================<phase: build-depends >============================ ===> votca-1.6.3 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.1.4_1.txz <snip> -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for C++ include stack -- Looking for C++ include stack - found -- Looking for C++ include stdexcept -- Looking for C++ include stdexcept - found -- Looking for C++ include string -- Looking for C++ include string - found -- Looking for C++ include vector -- Looking for C++ include vector - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found EXPAT: /usr/local/lib/libexpat.so (found version "2.2.10") -- Performing Test HAVE_AIX -- Performing Test HAVE_AIX - Failed -- Found TXT2TAGS: /usr/local/bin/txt2tags -- Found UnixCommands: /usr/local/bin/bash -- Found Eigen3: /usr/local/share/eigen3/cmake -- Found VOTCA_TOOLS: CMake Warning at csg/CMakeLists.txt:81 (message): Gromacs-2020 and above have no support for tabulated interactions, that are needed for coarse-graining (see and comment on https://gitlab.com/gromacs/gromacs/-/issues/1347) -- Found GMX: /usr/local/bin/gmx_d -- Looking for C++ include algorithm -- Looking for C++ include algorithm - found -- Looking for C++ include iomanip -- Looking for C++ include iomanip - found -- Looking for C++ include numeric -- Looking for C++ include numeric - found -- Looking for C++ include cstdlib -- Looking for C++ include cstdlib - found -- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6") found components: C -- Found LMP: /usr/local/bin/lmp -- Found VOTCA_CSG: -- CSG_SHARE is /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/share -- VOTCA_CSG_DEFAULTS is /wrkdirs/usr/ports/science/votca/work/.build/csg/share/xml/csg_defaults.xml -- Found LATEX: /usr/local/bin/latex -- I could not find the biber command. -- I could not find the pdftops command. -- LaTeX worked -- Found VOTCA_CSG: -- Found OpenMP_C: -fopenmp=libomp (found version "4.5") -- Found OpenMP_CXX: -fopenmp=libomp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Checking for module 'libxc' -- Found libxc, version 5.0.0 -- Found LIBXC: /usr/local/lib/libxc.so -- Found HDF5: /usr/local/lib/libhdf5_cpp.so;/usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found suitable version "1.10.6", minimum required is "1.8") found components: CXX CMake Warning at xtp/CMakeLists.txt:49 (message): HDF5 will be used such that it is compatible with version 1.8. -- Performing Test COMPILER_SUPPORTS_WNO_DEPRECATED_COPY -- Performing Test COMPILER_SUPPORTS_WNO_DEPRECATED_COPY - Success -- Found Boost: /usr/local/include (found suitable version "1.72.0", minimum required is "1.57.0") found components: program_options filesystem system timer chrono -- Found Eigen3: /usr/local/share/eigen3/cmake -- Found VOTCA_TOOLS: -- Found VOTCA_CSG: -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Could NOT find CLANG_FORMAT: Found unsuitable version "0.0", but required is at least "11" (found CLANG_FORMAT_EXECUTABLE-NOTFOUND) -- The following OPTIONAL packages have been found: * FFTW3 * GROMACS (required version >= 2021) * LATEX * UnixCommands * PkgConfig -- The following REQUIRED packages have been found: * EXPAT * Threads * TXT2TAGS * OpenMP * LIBXC * HDF5 (required version >= 1.8) * Boost (required version >= 1.57.0) * Eigen3 (required version >= 3.3.0) -- The following OPTIONAL packages have not been found: * MKL * Doxygen * CLANG_FORMAT (required version >= 11) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE Python_ADDITIONAL_VERSIONS -- Build files have been written to: /wrkdirs/usr/ports/science/votca/work/.build =========================================================================== =======================<phase: build >============================ ===> Building for votca-1.6.3 [1/472] cd /wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools && /usr/local/bin/cmake -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-1.6.3" -DGIT_EXECUTABLE="" -P /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/CMakeModules/gitversion.cmake [2/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/akimaspline.cc [3/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/application.cc [4/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/calculator.cc [5/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/colors.cc [6/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o -MF 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-Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++14 -MD -MT tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o -MF tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o.d -o tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/tools/votca_property.cc [41/472] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o -o tools/src/tools/votca_property -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib: tools/src/libtools/libvotca_tools.so.6 /usr/local/lib/libboost_program_options.so && : [42/472] cd /wrkdirs/usr/ports/science/votca/work/.build/tools/src/tools && /wrkdirs/usr/ports/science/votca/work/.build/tools/src/tools/votca_property --man > votca_property.man [43/472] cd /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts && /usr/local/bin/cmake -DINPUT="votca_compare.out" -DOUTPUT="votca_compare" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-1.6.3" -P /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/CMakeModules/gitscript.cmake [44/472] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg && /usr/local/bin/cmake -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-1.6.3" -DGIT_EXECUTABLE="" -P /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/CMakeModules/gitversion.cmake [45/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include 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/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/csgapplication.cc [54/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/exclusionlist.cc [55/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/imcio.cc [56/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc FAILED: csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc:83:13: error: use of undeclared identifier 'bind2nd' bind2nd(multiplies<double>(), norm)); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc:92:15: error: use of undeclared identifier 'bind2nd' bind2nd(multiplies<double>(), norm)); ^ 2 errors generated. ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/science/votca
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