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Date:      Thu, 4 Mar 2021 07:39:16 GMT
From:      pkg-fallout@FreeBSD.org
To:        yuri@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - 114amd64-default][science/votca] Failed for votca-1.6.3 in build
Message-ID:  <202103040739.1247dG30039694@beefy9.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: yuri@FreeBSD.org
Ident:          $FreeBSD: head/science/votca/Makefile 558351 2020-12-18 05:40:58Z yuri $
Log URL:        http://beefy9.nyi.freebsd.org/data/114amd64-default/567284/logs/votca-1.6.3.log
Build URL:      http://beefy9.nyi.freebsd.org/build.html?mastername=114amd64-default&build=567284
Log:

=>> Building science/votca
build started at Thu Mar  4 07:31:31 UTC 2021
port directory: /usr/ports/science/votca
package name: votca-1.6.3
building for: FreeBSD 114amd64-default-job-13 11.4-RELEASE-p8 FreeBSD 11.4-RELEASE-p8 amd64
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/votca/Makefile 558351 2020-12-18 05:40:58Z yuri $
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1300134
Jail OSVERSION: 1104001
Job Id: 13

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===> The following configuration options are available for votca-1.6.3:
     APPS=on: Build applications
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work  HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work  HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/votca/work/stage PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
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--End PLIST_SUB--

--SUB_LIST--
APPS="" NO_APPS="@comment " DOCS="" NO_DOCS="@comment " PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/votca DOCSDIR=/usr/local/share/doc/votca EXAMPLESDIR=/usr/local/share/examples/votca  WWWDIR=/usr/local/www/votca ETCDIR=/usr/local/etc/votca
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=======================<phase: check-sanity   >============================
===>  License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   votca-1.6.3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.3.txz
[114amd64-default-job-13] Installing pkg-1.16.3...
[114amd64-default-job-13] Extracting pkg-1.16.3: .......... done
===>   votca-1.6.3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of votca-1.6.3
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by votca-1.6.3 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by votca-1.6.3 for building
=> SHA256 Checksum OK for votca-votca-v1.6.3_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-efaa34c7f148c85493a3d15bf8cc800918d7111f_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-manual-16d27d55248fe7d2f3d78dcb2483f723ba3e38fe_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-tutorials-6819ffd5735cd253d55beffe1be61f0d49e6dd5e_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csgapps-4e40d2b92a5d33db2d750efa1dacdf1d502e7447_GH0.tar.gz.
=> SHA256 Checksum OK for votca-tools-377b8487df371862de793dfe38287f4ce1cbafb8_GH0.tar.gz.
=> SHA256 Checksum OK for votca-xtp-5879ed8d006471d37cc0b19dcbb557eac60cf898_GH0.tar.gz.
=> SHA256 Checksum OK for votca-xtp-tutorials-b4b25d570fef22b8806e2efb2fdcc844ad8acb7e_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by votca-1.6.3 for building
===>  Extracting for votca-1.6.3
=> SHA256 Checksum OK for votca-votca-v1.6.3_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-efaa34c7f148c85493a3d15bf8cc800918d7111f_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-manual-16d27d55248fe7d2f3d78dcb2483f723ba3e38fe_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csg-tutorials-6819ffd5735cd253d55beffe1be61f0d49e6dd5e_GH0.tar.gz.
=> SHA256 Checksum OK for votca-csgapps-4e40d2b92a5d33db2d750efa1dacdf1d502e7447_GH0.tar.gz.
=> SHA256 Checksum OK for votca-tools-377b8487df371862de793dfe38287f4ce1cbafb8_GH0.tar.gz.
=> SHA256 Checksum OK for votca-xtp-5879ed8d006471d37cc0b19dcbb557eac60cf898_GH0.tar.gz.
=> SHA256 Checksum OK for votca-xtp-tutorials-b4b25d570fef22b8806e2efb2fdcc844ad8acb7e_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for votca-1.6.3
===========================================================================
=======================<phase: build-depends  >============================
===>   votca-1.6.3 depends on executable: bash - not found
===>   Installing existing package /packages/All/bash-5.1.4_1.txz
<snip>
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for C++ include stack
-- Looking for C++ include stack - found
-- Looking for C++ include stdexcept
-- Looking for C++ include stdexcept - found
-- Looking for C++ include string
-- Looking for C++ include string - found
-- Looking for C++ include vector
-- Looking for C++ include vector - found
-- Looking for sqrt in m
-- Looking for sqrt in m - found
-- Found EXPAT: /usr/local/lib/libexpat.so (found version "2.2.10") 
-- Performing Test HAVE_AIX
-- Performing Test HAVE_AIX - Failed
-- Found TXT2TAGS: /usr/local/bin/txt2tags  
-- Found UnixCommands: /usr/local/bin/bash  
-- Found Eigen3: /usr/local/share/eigen3/cmake
-- Found VOTCA_TOOLS: 
CMake Warning at csg/CMakeLists.txt:81 (message):
  Gromacs-2020 and above have no support for tabulated interactions, that are
  needed for coarse-graining (see and comment on
  https://gitlab.com/gromacs/gromacs/-/issues/1347)


-- Found GMX: /usr/local/bin/gmx_d  
-- Looking for C++ include algorithm
-- Looking for C++ include algorithm - found
-- Looking for C++ include iomanip
-- Looking for C++ include iomanip - found
-- Looking for C++ include numeric
-- Looking for C++ include numeric - found
-- Looking for C++ include cstdlib
-- Looking for C++ include cstdlib - found
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6") found components: C 
-- Found LMP: /usr/local/bin/lmp  
-- Found VOTCA_CSG: 
-- CSG_SHARE is /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/share
-- VOTCA_CSG_DEFAULTS is /wrkdirs/usr/ports/science/votca/work/.build/csg/share/xml/csg_defaults.xml
-- Found LATEX: /usr/local/bin/latex   
-- I could not find the biber command.
-- I could not find the pdftops command.
-- LaTeX worked
-- Found VOTCA_CSG: 
-- Found OpenMP_C: -fopenmp=libomp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp=libomp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- Checking for module 'libxc'
--   Found libxc, version 5.0.0
-- Found LIBXC: /usr/local/lib/libxc.so  
-- Found HDF5: /usr/local/lib/libhdf5_cpp.so;/usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found suitable version "1.10.6", minimum required is "1.8") found components: CXX 
CMake Warning at xtp/CMakeLists.txt:49 (message):
  HDF5 will be used such that it is compatible with version 1.8.


-- Performing Test COMPILER_SUPPORTS_WNO_DEPRECATED_COPY
-- Performing Test COMPILER_SUPPORTS_WNO_DEPRECATED_COPY - Success
-- Found Boost: /usr/local/include (found suitable version "1.72.0", minimum required is "1.57.0") found components: program_options filesystem system timer chrono 
-- Found Eigen3: /usr/local/share/eigen3/cmake
-- Found VOTCA_TOOLS: 
-- Found VOTCA_CSG: 
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
-- Could NOT find CLANG_FORMAT: Found unsuitable version "0.0", but required is at least "11" (found CLANG_FORMAT_EXECUTABLE-NOTFOUND)
-- The following OPTIONAL packages have been found:

 * FFTW3
 * GROMACS (required version >= 2021)
 * LATEX
 * UnixCommands
 * PkgConfig

-- The following REQUIRED packages have been found:

 * EXPAT
 * Threads
 * TXT2TAGS
 * OpenMP
 * LIBXC
 * HDF5 (required version >= 1.8)
 * Boost (required version >= 1.57.0)
 * Eigen3 (required version >= 3.3.0)

-- The following OPTIONAL packages have not been found:

 * MKL
 * Doxygen
 * CLANG_FORMAT (required version >= 11)

-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_COLOR_MAKEFILE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_MODULE_LINKER_FLAGS
    CMAKE_VERBOSE_MAKEFILE
    Python_ADDITIONAL_VERSIONS


-- Build files have been written to: /wrkdirs/usr/ports/science/votca/work/.build
===========================================================================
=======================<phase: build          >============================
===>  Building for votca-1.6.3
[1/472] cd /wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools && /usr/local/bin/cmake -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-1.6.3" -DGIT_EXECUTABLE="" -P /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/CMakeModules/gitversion.cmake
[2/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/akimaspline.cc
[3/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/application.cc
[4/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/calculator.cc
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_LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY
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#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
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/usr/include/c++/v1/__config:961:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
1 warning generated.
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/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/rangeparser.cc:34:36: warning: 'bind2nd<std::__1::equal_to<char>, char>' is deprecated [-Wdeprecated-declarations]
      str.begin(), str.end(), std::bind2nd(std::equal_to<char>(), ' '));
                                   ^
/usr/include/c++/v1/functional:1089:1: note: 'bind2nd<std::__1::equal_to<char>, char>' has been explicitly marked deprecated here
_LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY
^
/usr/include/c++/v1/__config:972:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:961:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
1 warning generated.
[31/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/reducededge.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/reducededge.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/reducededge.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/reducededge.cc
[32/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/reducedgraph.cc
[33/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/spline.cc
[34/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/table.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/table.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/table.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/table.cc
[35/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/thread.cc
[36/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/tokenizer.cc
[37/472] /usr/bin/c++ -Dvotca_tools_EXPORTS -Itools/src/libtools -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -pthread -std=c++14 -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/version.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/version.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/version.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/libtools/version.cc
[38/472] : && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -fstack-protector-strong -shared -Wl,-soname,libvotca_tools.so.6 -o tools/src/libtools/libvotca_tools.so.6 tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/edge.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/edgecontainer.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/elements
 .cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/filesystem.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graph.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graph_df_visitor.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graphalgorithm.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graphdistvisitor.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graphnode.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/graphvisitor.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/parcer.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/property.cc.o
  tools/src/libtools/CMakeFiles/votca_tools.d!
 ir/propertyiomanipulator.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/reducededge.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/table.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o tools/src/libtools/CMakeFiles/votca_tools.dir/version.cc.o  -Wl,-rpath,/usr/local/lib:  /usr/local/lib/libboost_program_options.so  /usr/local/lib/libboost_filesystem.so  /usr/local/lib/libboost_system.so  /usr/local/lib/libexpat.so  -lm  /usr/local/lib/libfftw3.so  -pthread && :
[39/472] /usr/local/bin/cmake -E cmake_symlink_library tools/src/libtools/libvotca_tools.so.6 tools/src/libtools/libvotca_tools.so.6 tools/src/libtools/libvotca_tools.so && :
[40/472] /usr/bin/c++  -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++14 -MD -MT tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o -MF tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o.d -o tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/src/tools/votca_property.cc
[41/472] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o -o tools/src/tools/votca_property  -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib:  tools/src/libtools/libvotca_tools.so.6  /usr/local/lib/libboost_program_options.so && :
[42/472] cd /wrkdirs/usr/ports/science/votca/work/.build/tools/src/tools && /wrkdirs/usr/ports/science/votca/work/.build/tools/src/tools/votca_property --man > votca_property.man
[43/472] cd /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts && /usr/local/bin/cmake -DINPUT="votca_compare.out" -DOUTPUT="votca_compare" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-1.6.3" -P /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/CMakeModules/gitscript.cmake
[44/472] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg && /usr/local/bin/cmake -DTOP_SOURCE_DIR="/wrkdirs/usr/ports/science/votca/work/votca-1.6.3" -DGIT_EXECUTABLE="" -P /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/CMakeModules/gitversion.cmake
[45/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/beadlist.cc
[46/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/beadmotif.cc
[47/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/beadmotifalgorithms.cc
[48/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/beadmotifconnector.cc
[49/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/beadstructurealgorithms.cc
[50/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/boundarycondition.cc
[51/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/cgengine.cc
[52/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/cgmoleculedef.cc
[53/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/csgapplication.cc
[54/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/exclusionlist.cc
[55/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/imcio.cc
[56/472] /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc
FAILED: csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o 
/usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -Icsg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -pthread -std=c++17 -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc
/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc:83:13: error: use of undeclared identifier 'bind2nd'
            bind2nd(multiplies<double>(), norm));
            ^
/wrkdirs/usr/ports/science/votca/work/votca-1.6.3/csg/src/libcsg/map.cc:92:15: error: use of undeclared identifier 'bind2nd'
              bind2nd(multiplies<double>(), norm));
              ^
2 errors generated.
ninja: build stopped: subcommand failed.
*** Error code 1

Stop.
make: stopped in /usr/ports/science/votca



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