From owner-svn-ports-head@freebsd.org Tue May 26 03:37:48 2020 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id D6DAA2DE653; Tue, 26 May 2020 03:37:48 +0000 (UTC) (envelope-from linimon@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 49WKRJ5Chpz4GJb; Tue, 26 May 2020 03:37:48 +0000 (UTC) (envelope-from linimon@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id ADF221CFDD; Tue, 26 May 2020 03:37:48 +0000 (UTC) (envelope-from linimon@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 04Q3bmuH007744; Tue, 26 May 2020 03:37:48 GMT (envelope-from linimon@FreeBSD.org) Received: (from linimon@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 04Q3bmtU007742; Tue, 26 May 2020 03:37:48 GMT (envelope-from linimon@FreeBSD.org) Message-Id: <202005260337.04Q3bmtU007742@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: linimon set sender to linimon@FreeBSD.org using -f From: Mark Linimon Date: Tue, 26 May 2020 03:37:48 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r536568 - head/biology/gatk X-SVN-Group: ports-head X-SVN-Commit-Author: linimon X-SVN-Commit-Paths: head/biology/gatk X-SVN-Commit-Revision: 536568 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 26 May 2020 03:37:48 -0000 Author: linimon Date: Tue May 26 03:37:48 2020 New Revision: 536568 URL: https://svnweb.freebsd.org/changeset/ports/536568 Log: Mark as BROKEN on powerpc64 12. It builds on -head. While here, pet portlint (remove extra blank line). Approved by: portmgr (tier-2 blanket) Modified: head/biology/gatk/Makefile Modified: head/biology/gatk/Makefile ============================================================================== --- head/biology/gatk/Makefile Tue May 26 03:23:37 2020 (r536567) +++ head/biology/gatk/Makefile Tue May 26 03:37:48 2020 (r536568) @@ -11,6 +11,8 @@ COMMENT= Variant discovery in high-throughput sequenci LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.TXT +BROKEN_FreeBSD_12_powerpc64= fails to build: String index out of range: -1 + BUILD_DEPENDS= gradle62:devel/gradle62 USES= gettext-runtime @@ -51,7 +53,6 @@ GRADLE_ARGS= --offline post-extract: # need a separate extract step because the cache is in /tmp, and not under work/ like with maven @cd ${DEPS_CACHE_DIR} && ${TAR} xzf ${DISTDIR}/${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX} .endif - do-build: @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle62 \