From owner-freebsd-ports Fri Sep 27 6:30: 6 2002 Delivered-To: freebsd-ports@hub.freebsd.org Received: from mx1.FreeBSD.org (mx1.FreeBSD.org [216.136.204.125]) by hub.freebsd.org (Postfix) with ESMTP id 0C7FA37B401 for ; Fri, 27 Sep 2002 06:30:04 -0700 (PDT) Received: from freefall.freebsd.org (freefall.FreeBSD.org [216.136.204.21]) by mx1.FreeBSD.org (Postfix) with ESMTP id 01E4D43E86 for ; Fri, 27 Sep 2002 06:30:02 -0700 (PDT) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.12.6/8.12.6) with ESMTP id g8RDU2Co067915 for ; Fri, 27 Sep 2002 06:30:02 -0700 (PDT) (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.12.6/8.12.6/Submit) id g8RDU21W067914; Fri, 27 Sep 2002 06:30:02 -0700 (PDT) Received: from mx1.FreeBSD.org (mx1.FreeBSD.org [216.136.204.125]) by hub.freebsd.org (Postfix) with ESMTP id 44B5D37B401 for ; Fri, 27 Sep 2002 06:28:08 -0700 (PDT) Received: from thanatos.nachtalp.net (pD9E96C2C.dip.t-dialin.net [217.233.108.44]) by mx1.FreeBSD.org (Postfix) with ESMTP id 66E6843E75 for ; Fri, 27 Sep 2002 06:28:01 -0700 (PDT) (envelope-from nachtalp@thanatos.nachtalp.net) Received: from thanatos.nachtalp.net (localhost [127.0.0.1]) by thanatos.nachtalp.net (8.12.6/8.12.6) with ESMTP id g8RFSGD7027700 for ; Fri, 27 Sep 2002 15:28:16 GMT (envelope-from nachtalp@thanatos.nachtalp.net) Received: (from nachtalp@localhost) by thanatos.nachtalp.net (8.12.6/8.12.6/Submit) id g8RFSF3d027699; Fri, 27 Sep 2002 15:28:15 GMT Message-Id: <200209271528.g8RFSF3d027699@thanatos.nachtalp.net> Date: Fri, 27 Sep 2002 15:28:15 GMT From: Maxi Karasz Reply-To: Maxi Karasz To: FreeBSD-gnats-submit@FreeBSD.org X-Send-Pr-Version: 3.113 Subject: ports/43417: compliation of ncbi-toolkit fails Sender: owner-freebsd-ports@FreeBSD.ORG Precedence: bulk List-ID: List-Archive: (Web Archive) List-Help: (List Instructions) List-Subscribe: List-Unsubscribe: X-Loop: FreeBSD.org >Number: 43417 >Category: ports >Synopsis: compliation of ncbi-toolkit fails >Confidential: no >Severity: critical >Priority: medium >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Fri Sep 27 06:30:01 PDT 2002 >Closed-Date: >Last-Modified: >Originator: Maxi Karasz >Release: FreeBSD 4.7-RC i386 >Organization: MIPS >Environment: System: FreeBSD thanatos 4.7-RC FreeBSD 4.7-RC #1: Wed Sep 18 19:25:59 GMT 2002 nachtalp@thanatos:/usr/obj/usr/src/sys/THANATOS i386 machine: pIII 750 MHz, 128MB RAM system: see above >Description: make install fails with error code 1 (log below) i've tried gcc 2.95 and gcc 3.2 but neither of them works for me sequin1.c: In function `FGetLine': sequin1.c:2507: warning: comparison is always true due to limited range of data type sequin2.c: In function `ImportFastaDialog': sequin2.c:561: warning: comparison is always true due to limited range of data type sequin3.c: In function `AddBlastTag': sequin3.c:8620: warning: cast from pointer to integer of different size sequin3.c: In function `CommonAddBlastToSeqAnnot': sequin3.c:8645: warning: cast to pointer from integer of different size /usr/X11R6/lib/libXp.a(XpJob.o): In function `_Xpw_copyPasswd': XpJob.o(.text+0x0): multiple definition of `_Xpw_copyPasswd' /usr/X11R6/lib/libXm.a(Xmos.o)(.text+0x1d70): first defined here /usr/libexec/elf/ld: Warning: size of symbol `_Xpw_copyPasswd' changed from 402 to 442 in /usr/X11R6/lib/libXp.a(XpJob.o) ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.o(.text+0x94f): warning: tempnam() possibly used unsafely; consider using mkstemp() collect2: ld returned 1 exit status *** Error code 1 Stop in /usr/ports/biology/ncbi-toolkit/work/ncbi/build. FAILURE primary make status = 0, demo = 0, threaded_demo = 0, net = 1 ####### # ##### ##### #### ##### # # # # # # # # # ##### # # # # # # # # # ##### ##### # # ##### # # # # # # # # # ####### # # # # #### # # *** Error code 1 Stop in /usr/ports/biology/ncbi-toolkit/work/ncbi. *** Error code 1 Stop in /usr/ports/biology/ncbi-toolkit. >How-To-Repeat: another make install will do to reproduce the problem on my machine >Fix: >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message