Date: Mon, 04 Dec 2000 14:40:07 +0200 From: johann@egenetics.com To: FreeBSD-gnats-submit@freebsd.org Subject: ports/23262: Port fix: biology/emboss (MAINTAINER) Message-ID: <E142uud-0002ue-00@fling.sanbi.ac.za> Resent-Message-ID: <200012041250.eB4Co8m25921@freefall.freebsd.org>
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>Number: 23262
>Category: ports
>Synopsis: Port fix: biology/emboss (MAINTAINER)
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: change-request
>Submitter-Id: current-users
>Arrival-Date: Mon Dec 04 04:50:01 PST 2000
>Closed-Date:
>Last-Modified:
>Originator: Johann Visagie
>Release: FreeBSD 5.0-CURRENT i386
>Organization:
Electric Genetics
>Environment:
>Description:
- Fixed distfile checksums for EMBASSY applications.
- A small bugfix in MEME - an EMBASSY app I have not yet integrated into the
FreeBSD EMBOSS port - caused a distfile reroll. Apparently their distfile
rolling scripts touch a great number of files and then recreate the
tarballs... which then obviously have different checksums. Seems I've
signed myself up for a long term pain in the you-know-where.
- Added another distribution site to ${MASTER_SITES} while I was at it.
>How-To-Repeat:
>Fix:
diff -ruN emboss.bak/Makefile emboss/Makefile
--- emboss.bak/Makefile Mon Dec 4 14:34:14 2000
+++ emboss/Makefile Mon Dec 4 14:33:35 2000
@@ -9,7 +9,8 @@
PORTVERSION= 1.8.0
CATEGORIES= biology
MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \
- ftp://ftp.no.embnet.org/pub/EMBOSS/
+ ftp://ftp.no.embnet.org/pub/EMBOSS/ \
+ ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/
DISTFILES= ${PORTNAME:U}-${PORTVERSION}${EXTRACT_SUFX}
DIST_SUBDIR= ${PORTNAME}
EXTRACT_ONLY= ${PORTNAME:U}-${PORTVERSION}${EXTRACT_SUFX}
diff -ruN emboss.bak/distinfo emboss/distinfo
--- emboss.bak/distinfo Mon Dec 4 14:34:14 2000
+++ emboss/distinfo Mon Dec 4 14:32:52 2000
@@ -1,4 +1,4 @@
MD5 (emboss/EMBOSS-1.8.0.tar.gz) = 4f4b54f5e2c3e053baaffb19f258ad2a
-MD5 (emboss/MSE-0.0.4.tar.gz) = 981832ce14fc4bdccef12b8ae0d0ad1d
-MD5 (emboss/PHYLIP-3.573c.tar.gz) = b999b725bd0fc6d9ebdb31f6b57e30ee
-MD5 (emboss/TOPO-0.1.tar.gz) = 59025d1bf906217ccbb4ca4ed6214458
+MD5 (emboss/MSE-0.0.4.tar.gz) = 0585be481f33eb71ceadee89b339f86e
+MD5 (emboss/PHYLIP-3.573c.tar.gz) = 7186d27d0909ffb5481720ec41d99222
+MD5 (emboss/TOPO-0.1.tar.gz) = a8709a31b1fc2f5914365d87b7120e72
>Release-Note:
>Audit-Trail:
>Unformatted:
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