Date: Sun, 3 May 2020 04:25:43 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r533742 - in head/science/lammps: . files Message-ID: <202005030425.0434PhVu055887@repo.freebsd.org>
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Author: yuri Date: Sun May 3 04:25:42 2020 New Revision: 533742 URL: https://svnweb.freebsd.org/changeset/ports/533742 Log: science/lammps: Enable all packages that don't require dependencies, and USER-H5MD that does require dependencies Added: head/science/lammps/files/patch-lib_atc_Function.cpp (contents, props changed) Modified: head/science/lammps/Makefile Modified: head/science/lammps/Makefile ============================================================================== --- head/science/lammps/Makefile Sun May 3 04:03:30 2020 (r533741) +++ head/science/lammps/Makefile Sun May 3 04:25:42 2020 (r533742) @@ -2,7 +2,7 @@ PORTNAME= lammps PORTVERSION= ${GH_TAGNAME:C/(stable|patch)_([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\4.\3.\2/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/} -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/ @@ -38,23 +38,26 @@ CMAKE_ARGS_gcc= -DBUILD_OMP:BOOL=false # enable packages (for a complete list see STANDARD_PACKAGES in cmake/CMakeLists.txt) CMAKE_ON+= PKG_ASPHERE PKG_BODY PKG_CLASS2 PKG_COLLOID PKG_COMPRESS PKG_DIPOLE -CMAKE_ON+= PKG_GRANULAR PKG_KSPACE PKG_MANYBODY PKG_MC PKG_MESSAGE PKG_MOLECULE PKG_PERI PKG_POEMS PKG_QEQ +CMAKE_ON+= PKG_GRANULAR PKG_KSPACE PKG_MANYBODY PKG_MC PKG_MESSAGE PKG_MISC PKG_MOLECULE PKG_PERI PKG_POEMS PKG_QEQ CMAKE_ON+= PKG_REPLICA PKG_RIGID PKG_SHOCK PKG_SPIN PKG_SNAP PKG_SRD +CMAKE_ON+= PKG_USER-ATC PKG_USER-AWPMD PKG_USER-BOCS PKG_USER-CGDNA PKG_USER-MESODPD PKG_USER-CGSDK PKG_USER-COLVARS +CMAKE_ON+= PKG_USER-DIFFRACTION PKG_USER-DPD PKG_USER-DRUDE PKG_USER-EFF PKG_USER-FEP PKG_USER-LB CMAKE_ON+= PKG_USER-MANIFOLD PKG_USER-MEAMC PKG_USER-MGPT PKG_USER-MISC PKG_USER-MOFFF PKG_USER-MOLFILE -# PKG_MISC is broken: https://github.com/lammps/lammps/issues/2057 -# PKG_KIM is broken: https://github.com/lammps/lammps/issues/2059 -# Packages requiring extra downloades or dependencies: PKG_MSCG +CMAKE_ON+= PKG_USER-PHONON PKG_USER-PTM PKG_USER-QTB PKG_USER-REACTION +CMAKE_ON+= PKG_USER-REAXC PKG_USER-SDPD PKG_USER-SMD PKG_USER-SMTBQ PKG_USER-SPH PKG_USER-TALLY +CMAKE_ON+= PKG_USER-UEF PKG_USER-QMMM PKG_USER-YAFF +# Packages requiring extra downloades or dependencies: PKG_MSCG PKG_USER-ADIOS2 PKG_USER-NETCDF PKG_USER-QUIP PKG_USER-VTK PKG_KIM PKG_USER-PLUMED PKG_USER-SCAFACOS OPTIONS_DEFINE= JPEG PNG GZIP FFMPEG OPTIONS_DEFINE_clang= OPENMP OPTIONS_GROUP= PARALLEL PACKAGES -OPTIONS_DEFAULT= MPI JPEG PNG GZIP FFMPEG KOKKOS VORONOI LATTE ${OPTIONS_DEFAULT_${CHOSEN_COMPILER_TYPE}} +OPTIONS_DEFAULT= MPI JPEG PNG GZIP FFMPEG H5MD KOKKOS VORONOI LATTE ${OPTIONS_DEFAULT_${CHOSEN_COMPILER_TYPE}} OPTIONS_DEFAULT_clang= OPENMP OPTIONS_SUB= yes PARALLEL_DESC= Enable parallelizations: PACKAGES_DESC= Enable packages: OPTIONS_GROUP_PARALLEL= MPI ${OPTIONS_DEFINE_${CHOSEN_COMPILER_TYPE}} -OPTIONS_GROUP_PACKAGES= KOKKOS VORONOI LATTE +OPTIONS_GROUP_PACKAGES= H5MD KOKKOS VORONOI LATTE MPI_CMAKE_BOOL= BUILD_MPI PKG_MPIIO MPI_LIB_DEPENDS= libmpi.so:net/openmpi @@ -73,6 +76,11 @@ GZIP_DESC= Enable GZIP support GZIP_CMAKE_BOOL= WITH_GZIP FFMPEG_CMAKE_BOOL= WITH_FFMPEG + +H5MD_DESC= USER-H5MD package based on libhdf5 +H5MD_CMAKE_BOOL= PKG_USER-H5MD +H5MD_LIB_DEPENDS= libhdf5.so:science/hdf5 \ + libsz.so:science/szip KOKKOS_DESC= kokkos package based on the libkokkos library KOKKOS_CMAKE_BOOL= PKG_KOKKOS EXTERNAL_KOKKOS Added: head/science/lammps/files/patch-lib_atc_Function.cpp ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/lammps/files/patch-lib_atc_Function.cpp Sun May 3 04:25:42 2020 (r533742) @@ -0,0 +1,11 @@ +https://github.com/lammps/lammps/issues/2062 + +--- lib/atc/Function.cpp.orig 2020-05-03 03:21:56 UTC ++++ lib/atc/Function.cpp +@@ -1,5 +1,5 @@ + #ifndef _WIN32 +-#include <alloca.h> ++#include <stdlib.h> + #endif + #include "Function.h" + #include "ATC_Error.h"
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