Date: Sat, 5 Aug 2017 03:55:01 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110mips64-quarterly][science/openbabel] Failed for openbabel-2.4.1 in build Message-ID: <201708050355.v753t1Vx003604@beefy16.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: dbaio@FreeBSD.org Ident: $FreeBSD: branches/2017Q3/science/openbabel/Makefile 441557 2017-05-24 01:43:00Z dbaio $ Log URL: http://beefy16.nyi.freebsd.org/data/110mips64-quarterly/447276/logs/openbabel-2.4.1.log Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=110mips64-quarterly&build=447276 Log: ====>> Building science/openbabel build started at Sat Aug 5 03:18:49 UTC 2017 port directory: /usr/ports/science/openbabel building for: FreeBSD 110mips64-quarterly-job-07 11.0-RELEASE-p11 FreeBSD 11.0-RELEASE-p11 1100122 mips maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: branches/2017Q3/science/openbabel/Makefile 441557 2017-05-24 01:43:00Z dbaio $ Poudriere version: 3.1.19-61-ga8829ba9 Host OSVERSION: 1200033 Jail OSVERSION: 1100122 Job Id: 07 ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips64 UNAME_m=mips ABI_FILE=/usr/lib/crt1.o OSVERSION=1100122 UNAME_v=FreeBSD 11.0-RELEASE-p11 1100122 UNAME_r=11.0-RELEASE-p11 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110mips64-quarterly/ref QEMU_EMULATING=1 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=openbabel-2.4.1 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/110mips64-quarterly/ref/.p/pool MASTERNAME=110mips64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.19-61-ga8829ba9 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for openbabel-2.4.1: CAIRO=off: PNG support via cairo library PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/openbabel/work/stage PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VERSION="2.4.1" CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/openbabel" EXAMPLESDIR="share/examples/openbabel" DATADIR="share/openbabel" WWWDIR="www/openbabel" ETCDIR="etc/openbabel" --End PLIST_SUB-- --SUB_LIST-- CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openbabel DOCSDIR=/usr/local/share/doc/openbabel EXAMPLESDIR=/usr/local/share/examples/openbabel WWWDIR=/usr/local/www/openbabel ETCDIR=/usr/local/etc/openbabel --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes MACHINE=mips MACHINE_ARCH=mips64 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=mips64 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.0 OSVERSION=1100122 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native\|linux _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ _OSRELEASE=11.0-RELEASE-p11 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 131072 stack size (kbytes, -s) 8192 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> NOTICE: The openbabel port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: <snip> [62/516] /nxb-bin/usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -Iinclude -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/include -I/usr/local/include/eigen3 -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/griddata.o -MF src/CMakeFiles/openbabel.dir/griddata.o.d -o src/CMakeFiles/openbabel.dir/griddata.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/src/griddata.cpp [63/516] /nxb-bin/usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -Iinclude 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-DUSING_DYNAMIC_LIBS -Iinclude -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/test -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/wrkdirs/usr/ports/science/openbabel/work/.build/lib//\"" -DTESTDIR=/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/test -MD -MT test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o -MF test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o.d -o test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/test/inchiwrite.cp p [239/516] /nxb-bin/usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Iinclude -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/test -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/wrkdirs/usr/ports/science/openbabel/work/.build/lib//\"" -DTESTDIR=/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/test -MD -MT test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -MF test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o.d -o test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -c /wrkdirs/usr/ports/science/openbabel/ work/openbabel-2.4.1/src/formats/getinchi.cpp [240/516] : && /nxb-bin/usr/bin/c++ -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -DNDEBUG test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -o bin/test_inchiwrite -Wl,-rpath,/wrkdirs/usr/ports/science/openbabel/work/.build/lib lib/libopenbabel.so.5.0.0 -lm -lz && : [241/516] /nxb-bin/usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dbindings_python_EXPORTS -Iinclude -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/usr/local/include/python2.7 -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -MD -MT scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -MF scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o.d -o scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.4.1/scripts/python/openbabel-python.cpp [242/516] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -DNDEBUG -shared -o lib/_openbabel.so scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/lib/libpython2.7.so lib/libopenbabel.so.5.0.0 -lm -lz && : FAILED: lib/_openbabel.so : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98 -O2 -DNDEBUG -shared -o lib/_openbabel.so scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/lib/libpython2.7.so lib/libopenbabel.so.5.0.0 -lm -lz && : scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o: In function `SWIG_Python_ErrorType(int)': openbabel-python.cpp:(.text+0x204): relocation truncated to fit: R_MIPS_GOT_DISP against `PyExc_RuntimeError' openbabel-python.cpp:(.text+0x240): relocation truncated to fit: R_MIPS_GOT_DISP against `PyExc_IOError' openbabel-python.cpp:(.text+0x24c): relocation truncated to fit: R_MIPS_GOT_DISP against `PyExc_MemoryError' openbabel-python.cpp:(.text+0x258): relocation truncated to fit: R_MIPS_GOT_DISP against `PyExc_AttributeError' openbabel-python.cpp:(.text+0x264): relocation truncated to fit: R_MIPS_GOT_DISP against `PyExc_SystemError' openbabel-python.cpp:(.text+0x270): relocation truncated to fit: R_MIPS_GOT_DISP against `PyExc_ValueError' openbabel-python.cpp:(.text+0x27c): relocation truncated to fit: R_MIPS_GOT_DISP against `PyExc_SyntaxError' openbabel-python.cpp:(.text+0x288): relocation truncated to fit: R_MIPS_GOT_DISP against `PyExc_OverflowError' openbabel-python.cpp:(.text+0x294): relocation truncated to fit: R_MIPS_GOT_DISP against `PyExc_ZeroDivisionError' openbabel-python.cpp:(.text+0x2a0): relocation truncated to fit: R_MIPS_GOT_DISP against `PyExc_TypeError' openbabel-python.cpp:(.text+0x2ac): additional relocation overflows omitted from the output ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/science/openbabel
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