Date: Sun, 24 Apr 2016 02:02:11 GMT From: pkg-fallout@FreeBSD.org To: makc@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [exp - 103i386-default-build-as-user][math/matio] Failed for matio-1.5.2_6 in build Message-ID: <201604240202.u3O22BpR092075@package19.nyi.freebsd.org>
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Maintainer: makc@FreeBSD.org Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: head/math/matio/Makefile 413700 2016-04-20 20:42:39Z sunpoet $ Log URL: http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/413919/logs/matio-1.5.2_6.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=413919 Log: ====>> Building math/matio build started at Sun Apr 24 02:01:50 UTC 2016 port directory: /usr/ports/math/matio building for: FreeBSD 103i386-default-build-as-user-job-32 10.3-RELEASE FreeBSD 10.3-RELEASE i386 maintained by: makc@FreeBSD.org Makefile ident: $FreeBSD: head/math/matio/Makefile 413700 2016-04-20 20:42:39Z sunpoet $ Poudriere version: 3.1.12 Host OSVERSION: 1100102 Jail OSVERSION: 1003000 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 10.3-RELEASE UNAME_r=10.3-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 LINUX_OSRELEASE=2.6.32 SAVED_TERM= MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref FORCE_PACKAGE=yes PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=matio-1.5.2_6 OSREL=10.3 _OSRELEASE=10.3-RELEASE PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=32 PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool MASTERNAME=103i386-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1003000 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for matio-1.5.2_6: HDF5=on: Support for MAT file version 7.3 ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-mat73=yes --with-hdf5=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/matio/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/matio/work HOME=/wrkdirs/usr/ports/math/matio/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/matio/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/matio/work HOME=/wrkdirs/usr/ports/math/matio/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/matio" EXAMPLESDIR="share/examples/matio" DATADIR="share/matio" WWWDIR="www/matio" ETCDIR="etc/matio" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/matio DOCSDIR=/usr/local/share/doc/matio EXAMPLESDIR=/usr/local/share/examples/matio WWWDIR=/usr/local/www/matio ETCDIR=/usr/local/etc/matio --End SUB_LIST-- ---Begin make.conf--- MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> License BSD2CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> matio-1.5.2_6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.7.2.txz [103i386-default-build-as-user-job-32] Installing pkg-1.7.2... [103i386-default-build-as-user-job-32] Extracting pkg-1.7.2: .......... done ===> matio-1.5.2_6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of matio-1.5.2_6 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by matio-1.5.2_6 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by matio-1.5.2_6 for building => SHA256 Checksum OK for matio-1.5.2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by matio-1.5.2_6 for building ===> Extracting for matio-1.5.2_6 => SHA256 Checksum OK for matio-1.5.2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for matio-1.5.2_6 =========================================================================== =======================<phase: build-depends >============================ =========================================================================== =======================<phase: lib-depends >============================ ===> matio-1.5.2_6 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.0.txz [103i386-default-build-as-user-job-32] Installing hdf5-1.10.0... [103i386-default-build-as-user-job-32] `-- Installing hdf-szip-2.1_2... [103i386-default-build-as-user-job-32] `-- Extracting hdf-szip-2.1_2: ........ done [103i386-default-build-as-user-job-32] Extracting hdf5-1.10.0: .......... done ===> matio-1.5.2_6 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of matio-1.5.2_6 =========================================================================== =======================<phase: configure >============================ ===> Configuring for matio-1.5.2_6 configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... i386-portbld-freebsd10.3 checking host system type... i386-portbld-freebsd10.3 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking debug mode... no checking profile mode... no checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking how to convert i386-portbld-freebsd10.3 file names to i386-portbld-freebsd10.3 format... func_convert_file_noop checking how to convert i386-portbld-freebsd10.3 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd10.3 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make sets $(MAKE)... (cached) yes checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for pow in -lm... yes checking for ANSI C header files... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for getopt_long... internal checking size of double... 8 checking size of float... 4 checking size of long long... 8 checking size of long... 4 checking size of int... 4 checking size of short... 2 checking size of char... 1 checking size of void *... 4 checking size of size_t... 4 checking for mat_int64_t... int64_t checking for mat_uint64_t... uint64_t checking for mat_int32_t... int32_t checking for mat_uint32_t... uint32_t checking for mat_int16_t... int16_t checking for mat_uint16_t... uint16_t checking for mat_int8_t... int8_t checking for mat_uint8_t... uint8_t checking for va_copy()... yes checking for vsnprintf()... yes checking for snprintf()... yes checking for vasprintf()... yes checking for asprintf()... yes checking for matlab... no no checking for zlib Library... -lz checking for HDF5 software... -L/usr/local/lib -lhdf5 checking if HDF5 interface is v1.8... yes checking enable enable MAT v7.3 file support... yes checking for default MAT file version... MAT_FT_MAT5 checking enable extended sparse types... yes configure: creating ./config.status config.status: creating Makefile config.status: creating matio.pc config.status: creating src/Makefile config.status: creating getopt/Makefile config.status: creating tools/Makefile config.status: creating test/Makefile config.status: creating documentation/Makefile config.status: creating src/matioConfig.h config.status: creating src/matio_pubconf.h config.status: executing libtool commands config.status: executing test/atconfig commands MATIO Configuration Summary ============================================================== C Compiler: cc CFLAGS: -O2 -pipe -fstack-protector -fno-strict-aliasing Shared Libraries: yes Static Libraries: yes default MAT version: MAT_FT_MAT5 Features -------------------------------------------- MAT v7.3 file support: yes Extended sparse support: yes Packages -------------------------------------------- zlib: -lz hdf5: -L/usr/local/lib -lhdf5 MATLAB: =========================================================================== =======================<phase: build >============================ ===> Building for matio-1.5.2_6 Making all in src /usr/bin/make all-am /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o snprintf.lo snprintf.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c snprintf.c -fPIC -DPIC -o .libs/snprintf.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c snprintf.c -o snprintf.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o endian.lo endian.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c endian.c -fPIC -DPIC -o .libs/endian.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c endian.c -o endian.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o io.lo io.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c io.c -fPIC -DPIC -o .libs/io.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c io.c -o io.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o inflate.lo inflate.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c inflate.c -fPIC -DPIC -o .libs/inflate.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c inflate.c -o inflate.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o read_data.lo read_data.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c read_data.c -fPIC -DPIC -o .libs/read_data.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c read_data.c -o read_data.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o mat5.lo mat5.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat5.c -fPIC -DPIC -o .libs/mat5.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat5.c -o mat5.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o mat4.lo mat4.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat4.c -fPIC -DPIC -o .libs/mat4.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat4.c -o mat4.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o mat.lo mat.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat.c -fPIC -DPIC -o .libs/mat.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat.c -o mat.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o matvar_cell.lo matvar_cell.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c matvar_cell.c -fPIC -DPIC -o .libs/matvar_cell.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c matvar_cell.c -o matvar_cell.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o matvar_struct.lo matvar_struct.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c matvar_struct.c -fPIC -DPIC -o .libs/matvar_struct.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c matvar_struct.c -o matvar_struct.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o mat73.lo mat73.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat73.c -fPIC -DPIC -o .libs/mat73.o mat73.c:599:69: error: too few arguments to function call, expected 4, have 3 ref_id = H5Rdereference(dset_id,H5R_OBJECT,ref_ids+i); ~~~~~~~~~~~~~~ ^ /usr/local/include/H5Rpublic.h:63:8: note: 'H5Rdereference2' declared here H5_DLL hid_t H5Rdereference2(hid_t obj_id, hid_t oapl_id, H5R_type_t ref_type, const void *ref); ^ mat73.c:904:58: error: too few arguments to function call, expected 4, have 3 ref_ids+l); ^ /usr/local/include/H5Rpublic.h:63:8: note: 'H5Rdereference2' declared here H5_DLL hid_t H5Rdereference2(hid_t obj_id, hid_t oapl_id, H5R_type_t ref_type, const void *ref); ^ mat73.c:1033:73: error: too few arguments to function call, expected 4, have 3 ref_id = H5Rdereference(dset_id,H5R_OBJECT,ref_ids+i); ~~~~~~~~~~~~~~ ^ /usr/local/include/H5Rpublic.h:63:8: note: 'H5Rdereference2' declared here H5_DLL hid_t H5Rdereference2(hid_t obj_id, hid_t oapl_id, H5R_type_t ref_type, const void *ref); ^ mat73.c:2788:77: error: too few arguments to function call, expected 4, have 3 ref_id = H5Rdereference(dset_id,H5R_OBJECT,ref_ids+i); ~~~~~~~~~~~~~~ ^ /usr/local/include/H5Rpublic.h:63:8: note: 'H5Rdereference2' declared here H5_DLL hid_t H5Rdereference2(hid_t obj_id, hid_t oapl_id, H5R_type_t ref_type, const void *ref); ^ 4 errors generated. *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/math/matio/work/matio-1.5.2/src *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/math/matio/work/matio-1.5.2/src *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/math/matio/work/matio-1.5.2 *** Error code 1 Stop. make: stopped in /usr/ports/math/matio
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