Date: Tue, 12 Feb 2019 05:17:53 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 120armv7-quarterly][science/afni] Failed for afni-2015.11.13_8 in build Message-ID: <201902120517.x1C5HrI8010933@beefy13.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: branches/2019Q1/science/afni/Makefile 487272 2018-12-12 01:35:33Z gerald $ Log URL: http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/492481/logs/afni-2015.11.13_8.log Build URL: http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=492481 Log: =>> Building science/afni build started at Tue Feb 12 05:14:44 UTC 2019 port directory: /usr/ports/science/afni package name: afni-2015.11.13_8 building for: FreeBSD 120armv7-quarterly-job-02 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 arm maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: branches/2019Q1/science/afni/Makefile 487272 2018-12-12 01:35:33Z gerald $ Poudriere version: 3.2.8 Host OSVERSION: 1300009 Jail OSVERSION: 1200086 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1200086 UNAME_v=FreeBSD 12.0-RELEASE-p3 1200086 UNAME_r=12.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8 MASTERMNT=/usr/local/poudriere/data/.m/120armv7-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=120armv7-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for afni-2015.11.13_8: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/afni/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- CC="/nxb-bin/usr/bin/cc" R_SHARE_DIR=/usr/local/lib/R/share MOTIFLIB="-L/usr/local/lib -lXm -lXp" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/afni/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-DLIBICONV_PLUG" LDFLAGS=" " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -DLIBICONV_PLUG " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BS D_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd12 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.1 PERL_VER=5.28 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/afni" EXAMPLESDIR="share/examples/afni" DATADIR="share/afni" WWWDIR="www/afni" ETCDIR="etc/afni" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/afni DOCSDIR=/usr/local/share/doc/afni EXAMPLESDIR=/usr/local/share/examples/afni WWWDIR=/usr/local/www/afni ETCDIR=/usr/local/etc/afni --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=12.0-RELEASE-p3 OSREL=12.0 OSVERSION=1200086 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> afni-2015.11.13_8 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [120armv7-quarterly-job-02] Installing pkg-1.10.5_5... [120armv7-quarterly-job-02] Extracting pkg-1.10.5_5: .......... done ===> afni-2015.11.13_8 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of afni-2015.11.13_8 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by afni-2015.11.13_8 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by afni-2015.11.13_8 for building => SHA256 Checksum OK for afni-2015.11.13.tar.xz. =========================================================================== <snip> /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG error.c /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG -DVERSION=`cat ../VERSION` libvers.c /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG nc.c /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG ncio.c /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG ncx.c gm4 -B10000 putget.m4 >putget.c gm4: warning: `m4 -B' may be removed in a future release /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG putget.c /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG string.c /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG v1hpg.c /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG v2i.c /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG var.c ar cru libnetcdf.a attr.o dim.o error.o libvers.o nc.o ncio.o ncx.o putget.o string.o v1hpg.o v2i.o var.o ranlib libnetcdf.a gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc' Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' gmake[2]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc' rm -f *.o *.a *.so *.sl *.i *.Z core t_ncio.o t_ncio t_ncx.o t_ncx t_ncxx.o t_ncxx t_nc.o t_nc test.nc *.so gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc' Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nctest gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nctest' rm -f *.o *.a *.so *.sl *.i *.Z core nctest lint.out test.nc test2.nc times gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nctest' Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nc_test gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nc_test' rm -f *.o *.a *.so *.sl *.i *.Z core nc_test test.nc scratch.nc lint.out times gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nc_test' Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/fortran gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/fortran' rm -f *.o *.a *.so *.sl *.i *.Z core copy.nc ftest ftest.f77 test.nc gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/fortran' Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/f90 gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/f90' rm -f *.o *.a *.so *.sl *.i *.Z core netcdf_test *.mod example.nc example.cdl gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/f90' Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nf_test gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nf_test' rm -f *.o *.a *.so *.sl *.i *.Z core times lint.out nf_test scratch.nc *.f77 gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nf_test' Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncdump gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncdump' rm -f *.o *.a *.so *.sl *.i *.Z core ncdump test0.nc test1.nc test1.cdl test2.cdl gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncdump' Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncgen gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncgen' rm -f *.o *.a *.so *.sl *.i *.Z core ncgen netcdf.inc c0.nc c1.cdl c1.nc c2.cdl f0.nc ctest.c ctest ctest0.nc ctest1.cdl ftest.f ftest ftest0.nc ftest1.cdl gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncgen' Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/cxx gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/cxx' rm -f *.o *.a *.so *.sl *.i *.Z core nctst test.out example.nc *.cps *.dvi *.fns *.log *~ *.gs *.aux *.cp *.fn *.ky *.pg *.toc *.tp *.vr gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/cxx' Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' rm -f *.o *.a *.so *.sl *.i *.Z core gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src' /bin/rm -f thd_mincread.o /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c thd_mincread.c -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI /bin/rm -f suma_afni_surface.o /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_afni_surface.c -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI /bin/rm -f suma_datasets.o /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_datasets.c -o suma_datasets.o -ISUMA/ -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI suma_datasets.c:2619:11: warning: implicit declaration of function 'SUMA_GetDsetNodeIndexColRange_eng' is invalid in C99 [-Wimplicit-function-declaration] return(SUMA_GetDsetNodeIndexColRange_eng( ^ suma_datasets.c:10615:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ suma_datasets.c:10615:18: note: place parentheses around the assignment to silence this warning if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) { ^ ( ) suma_datasets.c:10615:18: note: use '==' to turn this assignment into an equality comparison if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) { ^ == suma_datasets.c:13921:4: warning: implicit declaration of function 'selenium_close' is invalid in C99 [-Wimplicit-function-declaration] selenium_close(); /* close any selenium opened browser windows if open */ ^ suma_datasets.c:14896:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced] if (!((tt = (1+sqrt(1+8*nseg))/2.0) == (int)tt)) { ^ ~~ suma_datasets.c:14903:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced] if (!((tt = (-1+sqrt(1+8*nseg))/2.0) == (int)tt)) { ^ ~~ suma_datasets.c:14910:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced] if (!((tt = sqrt(SDSET_VECLEN(dset))) == (int)tt)) { ^ ~~ suma_datasets.c:14931:32: warning: unsequenced modification and access to 'tt' [-Wunsequenced] ((!i0 && !i1) && (tt = (1+sqrt(1+8*nseg))/2.0) == (int)tt)) { ^ ~~ suma_datasets.c:14946:39: warning: unsequenced modification and access to 'tt' [-Wunsequenced] ((!i0 && !i1) && (tt = (-1+sqrt(1+8*nseg))/2.0) == (int)tt)) { ^ ~~ suma_datasets.c:14964:39: warning: unsequenced modification and access to 'tt' [-Wunsequenced] ((!i0 && !i1) && (tt = sqrt(SDSET_VECLEN(dset))) == (int)tt)) { ^ ~~ suma_datasets.c:15031:17: warning: unsequenced modification and access to 'tt' [-Wunsequenced] if ((tt=SDSET_VECLEN(dset)/(msz[0]*msz[1])) != (int)tt) { ^ ~~ suma_datasets.c:16329:26: warning: equality comparison result unused [-Wunused-comparison] dset->Aux->isGraph == TRACT_DSET; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ suma_datasets.c:16329:26: note: use '=' to turn this equality comparison into an assignment dset->Aux->isGraph == TRACT_DSET; ^~ = suma_datasets.c:16381:26: warning: equality comparison result unused [-Wunused-comparison] dset->Aux->isGraph == CIFTI_DSET; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ suma_datasets.c:16381:26: note: use '=' to turn this equality comparison into an assignment dset->Aux->isGraph == CIFTI_DSET; ^~ = suma_datasets.c:16386:26: warning: equality comparison result unused [-Wunused-comparison] dset->Aux->isGraph == CIFTI_DSET; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ suma_datasets.c:16386:26: note: use '=' to turn this equality comparison into an assignment dset->Aux->isGraph == CIFTI_DSET; ^~ = 13 warnings generated. /bin/rm -f suma_utils.o /nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_utils.c -o suma_utils.o -ISUMA/ -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI suma_utils.c:3043:10: error: statement requires expression of scalar type ('va_list' (aka '__builtin_va_list') invalid) if (vararg_ptr) { ^ ~~~~~~~~~~ 1 error generated. gmake[1]: *** [Makefile.INCLUDE:1795: suma_utils.o] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13' *** Error code 1 Stop. make: stopped in /usr/ports/science/afni
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