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Date:      Sat, 17 Jun 2017 22:32:37 +0000
From:      bugzilla-noreply@freebsd.org
To:        freebsd-ports-bugs@FreeBSD.org
Subject:   [Bug 220088] math/R fails to compile under poudriere or synth
Message-ID:  <bug-220088-13@https.bugs.freebsd.org/bugzilla/>

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D220088

            Bug ID: 220088
           Summary: math/R fails to compile under poudriere or synth
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: jrm@freebsd.org
          Reporter: lacey.leanne@gmail.com
          Assignee: jrm@freebsd.org
             Flags: maintainer-feedback?(jrm@freebsd.org)

Any attempt to compile this under 11.0-RELEASE-p10 amd64 in poudriere or sy=
nth
results in this error:

gcc5 -shared -fopenmp -O2 -pipe -fno-omit-frame-pointer -march=3Dnative=20
-DLIBICONV_PLUG -fstack-protector -Wl,-rpath=3D/usr/local/lib/gcc5 -isystem
/usr/local/include -fno-strict-aliasing -flto -fpic
-Wl,-rpath=3D/usr/local/lib/gcc5  -L/usr/local/lib/gcc5 -B/usr/local/bin
-L/usr/local/lib -L/usr/local/lib -fstack-protector
-Wl,-rpath=3D/usr/local/lib/gcc5 -L/usr/local/lib/gcc5  -o libR.so
CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o
array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o
connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o
dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o
eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o
inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o
logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o
platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o
printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o
rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprin=
tf.o
startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o
unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o
xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a=20=
=20=20
-L/usr/local/lib -lopenblasp -lgfortran -lm -lssp_nonshared -lquadmath=20
/usr/local/lib/libintl.so -Wl,-rpath -Wl,/usr/local/lib -lreadline
-L/usr/local/lib -lpcre -llzma -lbz2 -lz -lrt -lm -licuuc -licui18n
../extra/tre/libtre.a: error adding symbols: Malformed archive
collect2: error: ld returned 1 exit status
*** Error code 1

Stop.
make[3]: stopped in /wrkdirs/usr/ports/math/R/work/R-3.3.3/src/main
*** Error code 1

Stop.
make[2]: stopped in /wrkdirs/usr/ports/math/R/work/R-3.3.3/src/main
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/math/R/work/R-3.3.3/src
*** Error code 1

Stop.
make: stopped in /wrkdirs/usr/ports/math/R/work/R-3.3.3
root@11point0-RELEASE-amd64-live:/wrkdirs/usr/ports/math/R/work/R-3.3.3 #

But building with a simple "make package" in /usr/ports/math/R works.=20

Any suggestions of how to proceed from here would be welcome. I am also hap=
py
to provide any extra details that you might need.

--=20
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