Date: Thu, 7 May 2020 17:11:55 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 121arm64-quarterly][science/qmcpack] Failed for qmcpack-3.8.0_5 in configure Message-ID: <202005071711.047HBt8s049856@thunderx1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: branches/2020Q2/science/qmcpack/Makefile 528082 2020-03-08 21:56:36Z jbeich $ Log URL: http://thunderx1.nyi.freebsd.org/data/121arm64-quarterly/533565/logs/qmcpack-3.8.0_5.log Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=121arm64-quarterly&build=533565 Log: =>> Building science/qmcpack build started at Thu May 7 17:10:43 UTC 2020 port directory: /usr/ports/science/qmcpack package name: qmcpack-3.8.0_5 building for: FreeBSD 121arm64-quarterly-job-11 12.1-RELEASE-p4 FreeBSD 12.1-RELEASE-p4 1201000 arm64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2020Q2/science/qmcpack/Makefile 528082 2020-03-08 21:56:36Z jbeich $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300089 Jail OSVERSION: 1201000 Job Id: 11 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1201000 UNAME_v=FreeBSD 12.1-RELEASE-p4 1201000 UNAME_r=12.1-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root 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BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/qmcpack" EXAMPLESDIR="share/examples/qmcpack" DATADIR="share/qmcpack" WWWDIR="www/qmcpack" ETCDIR="etc/qmcpack" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/qmcpack DOCSDIR=/usr/local/share/doc/qmcpack EXAMPLESDIR=/usr/local/share/examples/qmcpack WWWDIR=/usr/local/www/qmcpack ETCDIR=/usr/local/etc/qmcpack --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=12.1-RELEASE-p4 OSREL=12.1 OSVERSION=1201000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> qmcpack-3.8.0_5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.13.2.txz [121arm64-quarterly-job-11] Installing pkg-1.13.2... [121arm64-quarterly-job-11] Extracting pkg-1.13.2: .......... done ===> qmcpack-3.8.0_5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of qmcpack-3.8.0_5 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by qmcpack-3.8.0_5 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by qmcpack-3.8.0_5 for building => SHA256 Checksum OK for QMCPACK-qmcpack-v3.8.0_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by qmcpack-3.8.0_5 for building ===> Extracting for qmcpack-3.8.0_5 => SHA256 Checksum OK for QMCPACK-qmcpack-v3.8.0_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for qmcpack-3.8.0_5 ===> Applying FreeBSD patches for qmcpack-3.8.0_5 =========================================================================== =======================<phase: build-depends >============================ ===> qmcpack-3.8.0_5 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.16.5.txz [121arm64-quarterly-job-11] Installing cmake-3.16.5... [121arm64-quarterly-job-11] `-- Installing curl-7.69.1... [121arm64-quarterly-job-11] | `-- Installing ca_root_nss-3.51.1... [121arm64-quarterly-job-11] | `-- Extracting ca_root_nss-3.51.1: ........ done [121arm64-quarterly-job-11] | `-- Installing libnghttp2-1.40.0... [121arm64-quarterly-job-11] | `-- Extracting libnghttp2-1.40.0: .......... done [121arm64-quarterly-job-11] `-- Extracting curl-7.69.1: .......... done [121arm64-quarterly-job-11] `-- Installing expat-2.2.8... [121arm64-quarterly-job-11] `-- Extracting expat-2.2.8: .......... done [121arm64-quarterly-job-11] `-- Installing jsoncpp-1.9.2... [121arm64-quarterly-job-11] `-- Extracting jsoncpp-1.9.2: .......... done [121arm64-quarterly-job-11] `-- Installing libarchive-3.4.2,1... [121arm64-quarterly-job-11] | `-- Installing liblz4-1.9.2_1,1... [121arm64-quarterly-job-11] | `-- Extracting liblz4-1.9.2_1,1: .......... done [121arm64-quarterly-job-11] | `-- Installing lzo2-2.10_1... [121arm64-quarterly-job-11] | `-- Extracting lzo2-2.10_1: .......... done [121arm64-quarterly-job-11] `-- Extracting libarchive-3.4.2,1: .......... done [121arm64-quarterly-job-11] `-- Installing libuv-1.35.0... <snip> ===> qmcpack-3.8.0_5 depends on shared library: libboost_system.so - not found ===> Installing existing package /packages/All/boost-libs-1.72.0_1.txz [121arm64-quarterly-job-11] Installing boost-libs-1.72.0_1... [121arm64-quarterly-job-11] `-- Installing icu-66.1,1... [121arm64-quarterly-job-11] `-- Extracting icu-66.1,1: .......... done [121arm64-quarterly-job-11] Extracting boost-libs-1.72.0_1: .......... done ===== Message from boost-libs-1.72.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> qmcpack-3.8.0_5 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so) ===> Returning to build of qmcpack-3.8.0_5 ===> qmcpack-3.8.0_5 depends on shared library: libfftw3.so - not found ===> Installing existing package /packages/All/fftw3-3.3.8_5.txz [121arm64-quarterly-job-11] Installing fftw3-3.3.8_5... [121arm64-quarterly-job-11] Extracting fftw3-3.3.8_5: .......... done ===> qmcpack-3.8.0_5 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> Returning to build of qmcpack-3.8.0_5 ===> qmcpack-3.8.0_5 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.6,1.txz [121arm64-quarterly-job-11] Installing hdf5-1.10.6,1... [121arm64-quarterly-job-11] `-- Installing hdf-szip-2.1.1... [121arm64-quarterly-job-11] `-- Extracting hdf-szip-2.1.1: .......... done [121arm64-quarterly-job-11] Extracting hdf5-1.10.6,1: .......... done ===> qmcpack-3.8.0_5 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of qmcpack-3.8.0_5 ===> qmcpack-3.8.0_5 depends on shared library: libmpich.so - not found ===> Installing existing package /packages/All/mpich-3.2.1_6.txz [121arm64-quarterly-job-11] Installing mpich-3.2.1_6... [121arm64-quarterly-job-11] `-- Installing hwloc-1.11.11... [121arm64-quarterly-job-11] | `-- Installing libpciaccess-0.16... [121arm64-quarterly-job-11] | | `-- Installing pciids-20200324... [121arm64-quarterly-job-11] | | `-- Extracting pciids-20200324: ..... done [121arm64-quarterly-job-11] | `-- Extracting libpciaccess-0.16: ......... done [121arm64-quarterly-job-11] | `-- Installing libxml2-2.9.10... [121arm64-quarterly-job-11] | `-- Extracting libxml2-2.9.10: .......... done [121arm64-quarterly-job-11] `-- Extracting hwloc-1.11.11: .......... done [121arm64-quarterly-job-11] `-- Installing perl5-5.30.2... [121arm64-quarterly-job-11] `-- Extracting perl5-5.30.2: .......... done [121arm64-quarterly-job-11] Extracting mpich-3.2.1_6: .......... done ===== Message from perl5-5.30.2: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===== Message from mpich-3.2.1_6: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> qmcpack-3.8.0_5 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Returning to build of qmcpack-3.8.0_5 ===> qmcpack-3.8.0_5 depends on shared library: libopenblas.so - not found ===> Installing existing package /packages/All/openblas-0.3.7_2,1.txz [121arm64-quarterly-job-11] Installing openblas-0.3.7_2,1... [121arm64-quarterly-job-11] Extracting openblas-0.3.7_2,1: .......... done ===> qmcpack-3.8.0_5 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Returning to build of qmcpack-3.8.0_5 ===> qmcpack-3.8.0_5 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so) ===> qmcpack-3.8.0_5 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) =========================================================================== =======================<phase: configure >============================ ===> Configuring for qmcpack-3.8.0_5 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/qmcpack/work/.build -- The C compiler identification is Clang 8.0.1 -- The CXX compiler identification is Clang 8.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- QMC_SYMLINK_TEST_FILES = TRUE. Using symbolic links for large test files may cause test failures if the build is installed on a separate filesystem from the source. For example, Titan at OLCF. -- CMAKE_BUILD_TYPE is RELEASE -- defining the float point precision Base precision = double Full precision = double -- Looking for sincos -- Looking for sincos - not found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Performing Test HAVE_ISZERO -- Performing Test HAVE_ISZERO - Failed -- Looking for dlfcn.h -- Looking for dlfcn.h - found -- Looking for inttypes.h -- Looking for inttypes.h - found -- Looking for memory.h -- Looking for memory.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Trying to figure out ..... -- Compiler: Clang -- libstdc++/C++ compiler version compatibility check failed CMake Error at CMake/Testlibstdc++.cmake:37 (message): Change Dir: /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_72650/fast && /usr/bin/make -f CMakeFiles/cmTC_72650.dir/build.make CMakeFiles/cmTC_72650.dir/build Building CXX object CMakeFiles/cmTC_72650.dir/try_libstdcxx.cpp.o /usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fopenmp -fomit-frame-pointer -fstrict-aliasing -D__forceinline=inline -Wno-deprecated -Wno-unused-value -Wno-undefined-var-template -mcpu=native -std=c++14 -o CMakeFiles/cmTC_72650.dir/try_libstdcxx.cpp.o -c /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp/try_libstdcxx.cpp Linking CXX executable cmTC_72650 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_72650.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fopenmp -fomit-frame-pointer -fstrict-aliasing -D__forceinline=inline -Wno-deprecated -Wno-unused-value -Wno-undefined-var-template -mcpu=native -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib CMakeFiles/cmTC_72650.dir/try_libstdcxx.cpp.o -o cmTC_72650 /usr/local/bin/ld: cannot find -lomp c++: error: linker command failed with exit code 1 (use -v to see invocation) *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp Call Stack (most recent call first): CMakeLists.txt:420 (include) -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/science/qmcpack
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