Date: Thu, 4 Mar 2021 09:09:33 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 130releng-arm64-quarterly][science/minc2] Failed for minc2-2.2.00_9, 1 in build Message-ID: <202103040909.12499XFq047163@ampere1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: branches/2021Q1/science/minc2/Makefile 494422 2019-03-02 17:45:58Z sunpoet $ Log URL: http://ampere1.nyi.freebsd.org/data/130releng-arm64-quarterly/567285/logs/minc2-2.2.00_9,1.log Build URL: http://ampere1.nyi.freebsd.org/build.html?mastername=130releng-arm64-quarterly&build=567285 Log: =>> Building science/minc2 build started at Thu Mar 4 09:07:42 UTC 2021 port directory: /usr/ports/science/minc2 package name: minc2-2.2.00_9,1 building for: FreeBSD 130releng-arm64-quarterly-job-05 13.0-BETA4 FreeBSD 13.0-BETA4 1300139 arm64 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: branches/2021Q1/science/minc2/Makefile 494422 2019-03-02 17:45:58Z sunpoet $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1300134 Jail OSVERSION: 1300139 Job Id: 05 !!! Jail is newer than host. (Jail: 1300139, Host: 1300134) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300139 UNAME_v=FreeBSD 13.0-BETA4 1300139 UNAME_r=13.0-BETA4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/130releng-arm64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/130releng-arm64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=130releng-arm64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/130releng-arm64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- ports@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --enable-shared=yes --enable-static=yes --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/minc2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/minc2/work HOME=/wrkdirs/usr/ports/science/minc2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/minc2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/minc2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/minc2/work HOME=/wrkdirs/usr/ports/science/minc2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/minc2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/minc" EXAMPLESDIR="share/examples/minc" DATADIR="share/minc" WWWDIR="www/minc" ETCDIR="etc/minc" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/minc DOCSDIR=/usr/local/share/doc/minc EXAMPLESDIR=/usr/local/share/examples/minc WWWDIR=/usr/local/www/minc ETCDIR=/usr/local/etc/minc --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: aarch64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: aarch64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: aarch64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=13.0-BETA4 OSREL=13.0 OSVERSION=1300139 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> NOTICE: The minc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> minc2-2.2.00_9,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.3.txz [130releng-arm64-quarterly-job-05] Installing pkg-1.16.3... [130releng-arm64-quarterly-job-05] Extracting pkg-1.16.3: .......... done ===> minc2-2.2.00_9,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of minc2-2.2.00_9,1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> NOTICE: The minc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License MIT accepted by the user ===> Fetching all distfiles required by minc2-2.2.00_9,1 for building =========================================================================== =======================<phase: checksum >============================ ===> NOTICE: The minc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in <snip> /bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/xfm/transformtags.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/transformtags.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/transformtags.o progs/xfm/transformtags.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o transformtags progs/xfm/transformtags.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/transformtags progs/xfm/transformtags.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/xfm/xfm2def.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/xfm2def.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfm2def.o progs/xfm/xfm2def.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o xfm2def progs/xfm/xfm2def.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/xfm2def progs/xfm/xfm2def.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/xfm/xfmconcat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/xfmconcat.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfmconcat.o progs/xfm/xfmconcat.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o xfmconcat progs/xfm/xfmconcat.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/xfmconcat progs/xfm/xfmconcat.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/xfm/xfminvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/xfm/xfminvert.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfminvert.o progs/xfm/xfminvert.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o xfminvert progs/xfm/xfminvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/xfminvert progs/xfm/xfminvert.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincconvert/mincconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincconvert/mincconvert.o -MD -MP -MF $depbase.Tpo -c -o progs/mincconvert/mincconvert.o progs/mincconvert/mincconvert.c &&\ mv -f $depbase.Tpo $depbase.Po progs/mincconvert/mincconvert.c:214:14: warning: implicit declaration of function 'micreatex' is invalid in C99 [-Wimplicit-function-declaration] new_fd = micreatex(new_fname, flags, &opts); ^ 1 warning generated. /bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o mincconvert progs/mincconvert/mincconvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/mincconvert progs/mincconvert/mincconvert.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincdump/mincdump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincdump/mincdump.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/mincdump.o progs/mincdump/mincdump.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/mincdump/vardata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincdump/vardata.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/vardata.o progs/mincdump/vardata.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/mincdump/dumplib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT progs/mincdump/dumplib.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/dumplib.o progs/mincdump/dumplib.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo conversion/ecattominc/ecattominc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/ecattominc.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/ecattominc.o conversion/ecattominc/ecattominc.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/ecattominc/insertblood.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/insertblood.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/insertblood.o conversion/ecattominc/insertblood.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/ecattominc/ecat_file.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/ecat_file.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/ecat_file.o conversion/ecattominc/ecat_file.c &&\ mv -f $depbase.Tpo $depbase.Po conversion/ecattominc/ecat_file.c:1025:7: warning: implicit declaration of function 'get_int32_value' is invalid in C99 [-Wimplicit-function-declaration] get_int32_value(&dirblock[offset], &value); ^ 1 warning generated. depbase=`echo conversion/ecattominc/machine_indep.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/ecattominc/machine_indep.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/machine_indep.o conversion/ecattominc/machine_indep.c &&\ mv -f $depbase.Tpo $depbase.Po conversion/ecattominc/machine_indep.c:20:22: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] *(short int *)to = ntohs(short_value); ^ conversion/ecattominc/machine_indep.c:27:21: warning: implicit declaration of function 'ntohl' is invalid in C99 [-Wimplicit-function-declaration] *(long int *)to = ntohl(long_value); ^ conversion/ecattominc/machine_indep.c:35:20: warning: implicit declaration of function 'ntohl' is invalid in C99 [-Wimplicit-function-declaration] *(int32_t *)to = ntohl(int32_value); ^ 3 warnings generated. /bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo conversion/minctoecat/minctoecat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/minctoecat/minctoecat.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/minctoecat.o conversion/minctoecat/minctoecat.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/minctoecat/ecat_write.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/minctoecat/ecat_write.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/ecat_write.o conversion/minctoecat/ecat_write.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/minctoecat/machine_indep.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -MT conversion/minctoecat/machine_indep.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/machine_indep.o conversion/minctoecat/machine_indep.c &&\ mv -f $depbase.Tpo $depbase.Po conversion/minctoecat/machine_indep.c:28:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) == 1) swab(from, to, length); ^ conversion/minctoecat/machine_indep.c:41:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) == 1) swaw((short*)from,to,length); ^ conversion/minctoecat/machine_indep.c:41:21: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) == 1) swaw((short*)from,to,length); ^ conversion/minctoecat/machine_indep.c:132:7: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) == 1) ^ conversion/minctoecat/machine_indep.c:142:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] swaw((short*)tmp, (short*)(dptr+j), 256); ^ conversion/minctoecat/machine_indep.c:168:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] swaw((short*)tmp, (short*)(dptr+j), 256); ^ conversion/minctoecat/machine_indep.c:184:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] read_matrix_data( fptr, strtblk, nblks, dptr, dtype) ^ conversion/minctoecat/machine_indep.c:191:8: warning: implicit declaration of function 'mat_rblk' is invalid in C99 [-Wimplicit-function-declaration] err = mat_rblk( fptr, strtblk, dptr, nblks); ^ conversion/minctoecat/machine_indep.c:196:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] write_matrix_data( fptr, strtblk, nblks, dptr, dtype) ^ conversion/minctoecat/machine_indep.c:215:8: warning: implicit declaration of function 'mat_wblk' is invalid in C99 [-Wimplicit-function-declaration] if ( mat_wblk( fptr, strtblk, dptr, nblks) < 0) error_flag++; ^ conversion/minctoecat/machine_indep.c:219:7: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) == 1) { ^ conversion/minctoecat/machine_indep.c:231:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] swaw( (short*)bufr1, (short*)bufr2, 256); ^ conversion/minctoecat/machine_indep.c:240:33: warning: incompatible pointer types passing 'char *' to parameter of type 'unsigned short *' [-Wincompatible-pointer-types] ftovaxf(*((float*)&dptr[k]),&bufr2[j]); ^~~~~~~~~ conversion/minctoecat/machine_indep.c:249:5: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] swaw( (short*)bufr1, (short*)bufr2, 256); ^ conversion/minctoecat/machine_indep.c:297:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) != 1) swab(tmp.b,&buf[*i],2); ^ conversion/minctoecat/machine_indep.c:309:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) != 1) { ^ conversion/minctoecat/machine_indep.c:311:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] swaw(tmp1.s,(short*)&buf[*i],2); ^ conversion/minctoecat/machine_indep.c:324:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) != 1) { ^ conversion/minctoecat/machine_indep.c:326:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] swaw(tmp1.s,(short*)&buf[*i],2); ^ conversion/minctoecat/machine_indep.c:343:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) != 1) { ^ conversion/minctoecat/machine_indep.c:345:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] swaw(tmp1.s,(short*)&buf[*i],2); ^ conversion/minctoecat/machine_indep.c:365:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) != 1) { ^ conversion/minctoecat/machine_indep.c:379:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) != 1) { ^ conversion/minctoecat/machine_indep.c:381:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] swaw((short*)tmp.b,(short*)tmp1.b,2); ^ conversion/minctoecat/machine_indep.c:394:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) != 1) { ^ conversion/minctoecat/machine_indep.c:396:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] swaw((short*)tmp.b,(short*)tmp1.b,2); ^ conversion/minctoecat/machine_indep.c:409:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) != 1) { ^ conversion/minctoecat/machine_indep.c:411:3: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] swaw((short*)tmp.b,(short*)tmp1.b,2); ^ 28 warnings generated. /bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -L/usr/local/lib -fstack-protector-strong -o minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -O2 -pipe -Wno-error=return-type -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -o .libs/minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib ld: error: duplicate symbol: matrix_errno >>> defined at minctoecat.c >>> conversion/minctoecat/minctoecat.o:(matrix_errno) >>> defined at ecat_write.c >>> conversion/minctoecat/ecat_write.o:(.bss+0x0) ld: error: duplicate symbol: matrix_errtxt >>> defined at minctoecat.c >>> conversion/minctoecat/minctoecat.o:(matrix_errtxt) >>> defined at ecat_write.c >>> conversion/minctoecat/ecat_write.o:(.bss+0x4) ld: error: duplicate symbol: matrix_errno >>> defined at minctoecat.c >>> conversion/minctoecat/minctoecat.o:(matrix_errno) >>> defined at machine_indep.c >>> conversion/minctoecat/machine_indep.o:(.bss+0x0) ld: error: duplicate symbol: matrix_errtxt >>> defined at minctoecat.c >>> conversion/minctoecat/minctoecat.o:(matrix_errtxt) >>> defined at machine_indep.c >>> conversion/minctoecat/machine_indep.o:(.bss+0x4) cc: error: linker command failed with exit code 1 (use -v to see invocation) gmake[3]: *** [Makefile:2377: minctoecat] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/minc2/work/minc-release-2.2.00' gmake[2]: *** [Makefile:3222: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/minc2/work/minc-release-2.2.00' gmake[1]: *** [Makefile:1498: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/minc2/work/minc-release-2.2.00' *** Error code 1 Stop. make: stopped in /usr/ports/science/minc2
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