From owner-freebsd-ports-bugs@FreeBSD.ORG Sun Aug 17 13:20:03 2008 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 973CF1065688 for ; Sun, 17 Aug 2008 13:20:03 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 6B5928FC15 for ; Sun, 17 Aug 2008 13:20:03 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.2/8.14.2) with ESMTP id m7HDK3bH066965 for ; Sun, 17 Aug 2008 13:20:03 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.2/8.14.1/Submit) id m7HDK3l5066964; Sun, 17 Aug 2008 13:20:03 GMT (envelope-from gnats) Resent-Date: Sun, 17 Aug 2008 13:20:03 GMT Resent-Message-Id: <200808171320.m7HDK3l5066964@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Wen heping Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 9651A1065675 for ; Sun, 17 Aug 2008 13:12:22 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id 7D3CE8FC1A for ; Sun, 17 Aug 2008 13:12:22 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.2/8.14.2) with ESMTP id m7HDCMEf086508 for ; Sun, 17 Aug 2008 13:12:22 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.2/8.14.1/Submit) id m7HDCMJt086507; Sun, 17 Aug 2008 13:12:22 GMT (envelope-from nobody) Message-Id: <200808171312.m7HDCMJt086507@www.freebsd.org> Date: Sun, 17 Aug 2008 13:12:22 GMT From: Wen heping To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/126589: [NEW PORT]science/jmol-devel : An Open-Source Java Viewer for Chemical Structures in 3D X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 17 Aug 2008 13:20:03 -0000 >Number: 126589 >Category: ports >Synopsis: [NEW PORT]science/jmol-devel : An Open-Source Java Viewer for Chemical Structures in 3D >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Sun Aug 17 13:20:03 UTC 2008 >Closed-Date: >Last-Modified: >Originator: Wen heping >Release: FreeBSD 7.0 release >Organization: ChangAn Middle School >Environment: FreeBSD fb7.wenjing.com 7.0-RELEASE FreeBSD 7.0-RELEASE #0: Sun Feb 24 19:59:52 UTC 2008 root@logan.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC i386 >Description: Jmol is a Java molecular viewer for three-dimensional chemical structures. Features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs. WWW: http://sourceforge.net/projects/jmol/ >How-To-Repeat: >Fix: Patch attached with submission follows: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # jmol-devel # jmol-devel/distinfo # jmol-devel/pkg-plist # jmol-devel/pkg-descr # jmol-devel/Makefile # echo c - jmol-devel mkdir -p jmol-devel > /dev/null 2>&1 echo x - jmol-devel/distinfo sed 's/^X//' >jmol-devel/distinfo << 'END-of-jmol-devel/distinfo' XMD5 (jmol-11.6.RC7-full.tar.gz) = d1dbe3488307cbc5f9b7dcf69daaf0a1 XSHA256 (jmol-11.6.RC7-full.tar.gz) = 81741c30f8c48d15f3e2e63f02c7c0a4bdd7db2fe9e98b7e2cd870c04399d5f1 XSIZE (jmol-11.6.RC7-full.tar.gz) = 27935363 XMD5 (selfSignedCertificate.cer) = ec6c4b413be88a8fab584399cc931d55 XSHA256 (selfSignedCertificate.cer) = 0fa14fd5f21593a328ba4439ac17b3b507969d71a2734e392239b83ae8ec2920 XSIZE (selfSignedCertificate.cer) = 735 XMD5 (selfSignedCertificate.store) = bf2be32212c831e4fa369809a639b75d XSHA256 (selfSignedCertificate.store) = 81b69722530d94dc599ce79382a3386cce518baa7ab79fbb530d13483b51bed5 XSIZE (selfSignedCertificate.store) = 1516 END-of-jmol-devel/distinfo echo x - jmol-devel/pkg-plist sed 's/^X//' >jmol-devel/pkg-plist << 'END-of-jmol-devel/pkg-plist' X%%PORTDOCS%%%%DOCSDIR%%/JmolAppletGuide.html X%%PORTDOCS%%%%DOCSDIR%%/JmolDevelopersGuide.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch01.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch02.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch02s02.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch02s03.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch02s04.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch02s05.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch02s06.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch02s07.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch03.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch03s02.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch03s03.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch03s04.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch03s05.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch04.html X%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/index.html X%%PORTDOCS%%%%DOCSDIR%%/docbook-xml-4.4.zip X%%PORTDOCS%%%%DOCSDIR%%/docbook-xsl-1.74.0.tar.gz X%%PORTDOCS%%%%DOCSDIR%%/ibm.license.html X%%PORTDOCS%%%%DOCSDIR%%/jcfl-1.2.6-source.tar.gz X%%PORTDOCS%%%%DOCSDIR%%/jpegEncoder.license X%%PORTDOCS%%%%DOCSDIR%%/lgpl.license X%%PORTDOCS%%%%DOCSDIR%%/rasmol26.license X%%PORTDOCS%%%%DOCSDIR%%/source/JmolAppletGuide.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/JmolAppletGuide_de.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/JmolAppletGuide_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/JmolDevelopersGuide.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/JmolDevelopersGuide_de.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/JmolDevelopersGuide_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/JmolGuide.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/JmolGuide_de.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/JmolGuide_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/JmolHistory.xml X%%PORTDOCS%%%%DOCSDIR%%/source/JmolHistoryToHtml.xsl X%%PORTDOCS%%%%DOCSDIR%%/source/JmolHistory_fr.xml X%%PORTDOCS%%%%DOCSDIR%%/source/JmolHistory_nl.xml X%%PORTDOCS%%%%DOCSDIR%%/source/applet/browsers.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/applet/browsers_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/applet/hardware.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/applet/hardware_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/applet/intro.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/applet/intro_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/applet/serverconfig.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/applet/serverconfig_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/applet/usage.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/applet/usage_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/guide/commandline.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/guide/commandline_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/guide/intro.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/guide/intro_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/guide/menus.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/guide/menus_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/guide/scriptCommands.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/guide/scripts.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/guide/scripts_fr.docbook.xml X%%PORTDOCS%%%%DOCSDIR%%/source/history/changes.xml X%%PORTDOCS%%%%DOCSDIR%%/source/history/changes_fr.xml X%%PORTDOCS%%%%DOCSDIR%%/source/history/changes_nl.xml X%%PORTDOCS%%%%DOCSDIR%%/source/history/contributors.xml X%%PORTDOCS%%%%DOCSDIR%%/source/po/JmolAppletGuide.de.po X%%PORTDOCS%%%%DOCSDIR%%/source/po/JmolAppletGuide.pot X%%PORTDOCS%%%%DOCSDIR%%/source/po/JmolDevelopersGuide.de.po X%%PORTDOCS%%%%DOCSDIR%%/source/po/JmolDevelopersGuide.pot X%%PORTDOCS%%%%DOCSDIR%%/source/po/JmolGuide.de.po X%%PORTDOCS%%%%DOCSDIR%%/source/po/JmolGuide.pot X%%PORTDOCS%%%%DOCSDIR%%/source/xml2po-modes/docbook.py X%%PORTDOCS%%%%DOCSDIR%%/source/xml2po-modes/empty.py X%%PORTDOCS%%%%DOCSDIR%%/source/xml2po-modes/gs.py X%%PORTDOCS%%%%DOCSDIR%%/source/xml2po.bat X%%PORTDOCS%%%%DOCSDIR%%/source/xml2po.py X%%PORTDOCS%%%%DOCSDIR%%/source/xml2po.sh X%%PORTDOCS%%%%DOCSDIR%%/splash.ai X%%JAVAJARDIR%%/Jmol.jar X%%JAVAJARDIR%%/Jmol.js X%%JAVAJARDIR%%/JmolApplet.jar X%%JAVAJARDIR%%/JmolApplet0.jar X%%JAVAJARDIR%%/JmolApplet0_Core.jar X%%JAVAJARDIR%%/JmolApplet0_Jars.jar X%%JAVAJARDIR%%/JmolApplet0_Main.jar X%%JAVAJARDIR%%/JmolApplet0_Minimize.jar X%%JAVAJARDIR%%/JmolApplet0_Popup.jar X%%JAVAJARDIR%%/JmolApplet0_Quantum.jar X%%JAVAJARDIR%%/JmolApplet0_ReadersCifPdb.jar X%%JAVAJARDIR%%/JmolApplet0_ReadersMolXyz.jar X%%JAVAJARDIR%%/JmolApplet0_ReadersMore.jar X%%JAVAJARDIR%%/JmolApplet0_ReadersXml.jar X%%JAVAJARDIR%%/JmolApplet0_ShapeBio.jar X%%JAVAJARDIR%%/JmolApplet0_ShapeSpecial.jar X%%JAVAJARDIR%%/JmolApplet0_Smiles.jar X%%JAVAJARDIR%%/JmolApplet0_Symmetry.jar X%%JAVAJARDIR%%/JmolApplet0_Viewer.jar X%%JAVAJARDIR%%/JmolApplet0_i18n.jar X%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/xml2po-modes X%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/po X%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/history X%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/guide X%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/applet X%%PORTDOCS%%@dirrm %%DOCSDIR%%/source X%%PORTDOCS%%@dirrm %%DOCSDIR%%/JmolUserGuide X%%PORTDOCS%%@dirrm %%DOCSDIR%% END-of-jmol-devel/pkg-plist echo x - jmol-devel/pkg-descr sed 's/^X//' >jmol-devel/pkg-descr << 'END-of-jmol-devel/pkg-descr' XJmol is a Java molecular viewer for Xthree-dimensional chemical structures. XFeatures include reading a variety Xof file types and output from quantum Xchemistry programs, and animation of Xmulti-frame files and computed normal Xmodes from quantum programs. X XWWW: http://sourceforge.net/projects/jmol/ END-of-jmol-devel/pkg-descr echo x - jmol-devel/Makefile sed 's/^X//' >jmol-devel/Makefile << 'END-of-jmol-devel/Makefile' X# Ports collection makefile for: jmol-devel X# Date created: August 17, 2008 X# Whom: Wen heping X# X# $FreeBSD$ X# X XPORTNAME= jmol-devel XPORTVERSION= 11.6.r7 XCATEGORIES= science java XMASTER_SITES= SF:source1 \ X http://jmol.svn.sourceforge.net/viewvc/*checkout*/jmol/trunk/Jmol/selfSignedCertificate/:source2 XMASTER_SITE_SUBDIR= jmol XDISTFILES= jmol-11.6.RC7-full.tar.gz:source1 \ X selfSignedCertificate.cer:source2 \ X selfSignedCertificate.store:source2 XEXTRACT_ONLY= jmol-11.6.RC7-full.tar.gz X XMAINTAINER= wenheping@gmail.com XCOMMENT= An Open-Source Java Viewer for Chemical Structures in 3D X XUSE_JAVA= yes XJAVA_VERSION= 1.4+ XWRKSRC= ${WRKDIR}/jmol-11.6.RC7 XJMOL_FILES= Jmol.jar JmolApplet.jar JmolApplet0.jar \ X JmolApplet0_Core.jar JmolApplet0_Jars.jar \ X JmolApplet0_Main.jar JmolApplet0_Minimize.jar\ X JmolApplet0_Popup.jar JmolApplet0_Quantum.jar \ X JmolApplet0_ReadersCifPdb.jar JmolApplet0_ReadersMolXyz.jar \ X JmolApplet0_ReadersMore.jar JmolApplet0_ReadersXml.jar \ X JmolApplet0_ShapeBio.jar JmolApplet0_ShapeSpecial.jar \ X JmolApplet0_Smiles.jar JmolApplet0_Viewer.jar \ X JmolApplet0_i18n.jar JmolApplet0_Symmetry.jar XJMOL_FILES_EXT= Jmol.js XSIGN_DIR= ${WRKSRC}/selfSignedCertificate X X.if !defined(WITHOUT_COMPILE) XUSE_ANT= yes XALL_TARGET= all X.if !defined(NOPORTDOCS) XALL_TARGET= main X.endif X.else XNO_BUILD= yes X.endif X X.include X Xpre-fetch: X @${ECHO_MSG} "" X @${ECHO_MSG} "You may use the following build options:" X @${ECHO_MSG} "" X @${ECHO_MSG} " WITHOUT_COMPILE=yes Install the pre-compiled .jar file" X @${ECHO_MSG} "" X Xpost-extract: X @${MKDIR} ${SIGN_DIR} X @${CP} ${DISTDIR}/selfSignedCertificate.cer ${SIGN_DIR} X @${CP} ${DISTDIR}/selfSignedCertificate.store ${SIGN_DIR} X Xdo-install: X.for j in ${JMOL_FILES_EXT} X ${INSTALL_DATA} ${WRKSRC}/${j} ${JAVAJARDIR} X.endfor X X.if !defined(WITHOUT_COMPILE) X.for j in ${JMOL_FILES} X ${INSTALL_DATA} ${WRKSRC}/build/${j} ${JAVAJARDIR} X.endfor X.else X.for j in ${JMOL_FILES} X ${INSTALL_DATA} ${WRKSRC}/${j} ${JAVAJARDIR} X.endfor X.endif X X.if !defined(NOPORTDOCS) X @${ECHO_MSG} -n ">> Installing documentation in ${DOCSDIR}..." X @cd ${WRKSRC}/doc && ${FIND} . -type d -exec ${MKDIR} ${DOCSDIR}/{} \; X @cd ${WRKSRC}/doc && ${FIND} . -type f -exec \ X ${INSTALL_DATA} {} ${DOCSDIR}/{} \; X @${ECHO_MSG} " [DONE]" X.endif X X.include END-of-jmol-devel/Makefile exit >Release-Note: >Audit-Trail: >Unformatted: