Date: Mon, 9 May 2022 05:07:53 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 2e6949eb94d2 - main - science/agrum: Update 0.22.1 -> 1.0.0 Message-ID: <202205090507.24957rvY025643@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=2e6949eb94d205111965361c83c754c35a59c1ac commit 2e6949eb94d205111965361c83c754c35a59c1ac Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2022-05-09 05:07:27 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2022-05-09 05:07:51 +0000 science/agrum: Update 0.22.1 -> 1.0.0 --- science/agrum/Makefile | 4 +- science/agrum/distinfo | 6 +- science/agrum/pkg-plist | 146 +++++++++++++++++++++++++++--------------------- 3 files changed, 87 insertions(+), 69 deletions(-) diff --git a/science/agrum/Makefile b/science/agrum/Makefile index d457e031a02a..f5e6fad69de4 100644 --- a/science/agrum/Makefile +++ b/science/agrum/Makefile @@ -1,5 +1,5 @@ PORTNAME= agrum -DISTVERSION= 0.22.1 +DISTVERSION= 1.0.0 CATEGORIES= science math MAINTAINER= yuri@FreeBSD.org @@ -15,7 +15,7 @@ LLD_UNSAFE= yes USE_GITLAB= yes GL_ACCOUNT= agrumery GL_PROJECT= aGrUM -GL_COMMIT= 29e540d8169268e8fe5d5c69bc4b2b1290f12320 +GL_COMMIT= b115796fc93d38d56709375674102671b260ed11 CMAKE_OFF= USE_SWIG diff --git a/science/agrum/distinfo b/science/agrum/distinfo index 2757e112cc4a..b883944a6f17 100644 --- a/science/agrum/distinfo +++ b/science/agrum/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1631560381 -SHA256 (agrumery-aGrUM-29e540d8169268e8fe5d5c69bc4b2b1290f12320_GL0.tar.gz) = 27a75a8f1d83d15d663b0ea68997d19afa77361409052fab369f445219a41302 -SIZE (agrumery-aGrUM-29e540d8169268e8fe5d5c69bc4b2b1290f12320_GL0.tar.gz) = 19467184 +TIMESTAMP = 1652066615 +SHA256 (agrumery-aGrUM-b115796fc93d38d56709375674102671b260ed11_GL0.tar.gz) = 2161d4b821689ec5db24fb0e3d11b450ffee9a5313bc6e77d7cf805d57b55d81 +SIZE (agrumery-aGrUM-b115796fc93d38d56709375674102671b260ed11_GL0.tar.gz) = 20610346 diff --git a/science/agrum/pkg-plist b/science/agrum/pkg-plist index dd493f502237..6515b4cae270 100644 --- a/science/agrum/pkg-plist +++ b/science/agrum/pkg-plist @@ -136,17 +136,17 @@ include/agrum/BN/learning/K2_tpl.h include/agrum/BN/learning/Miic.h include/agrum/BN/learning/aprioris/apriori.h include/agrum/BN/learning/aprioris/aprioriBDeu.h -include/agrum/BN/learning/aprioris/aprioriBDeu_tpl.h +include/agrum/BN/learning/aprioris/aprioriBDeu_inl.h include/agrum/BN/learning/aprioris/aprioriDirichletFromDatabase.h -include/agrum/BN/learning/aprioris/aprioriDirichletFromDatabase_tpl.h +include/agrum/BN/learning/aprioris/aprioriDirichletFromDatabase_inl.h include/agrum/BN/learning/aprioris/aprioriK2.h -include/agrum/BN/learning/aprioris/aprioriK2_tpl.h +include/agrum/BN/learning/aprioris/aprioriK2_inl.h include/agrum/BN/learning/aprioris/aprioriNoApriori.h -include/agrum/BN/learning/aprioris/aprioriNoApriori_tpl.h +include/agrum/BN/learning/aprioris/aprioriNoApriori_inl.h include/agrum/BN/learning/aprioris/aprioriSmoothing.h -include/agrum/BN/learning/aprioris/aprioriSmoothing_tpl.h +include/agrum/BN/learning/aprioris/aprioriSmoothing_inl.h include/agrum/BN/learning/aprioris/aprioriTypes.h -include/agrum/BN/learning/aprioris/apriori_tpl.h +include/agrum/BN/learning/aprioris/apriori_inl.h include/agrum/BN/learning/constraints/structuralConstraint.h include/agrum/BN/learning/constraints/structuralConstraintDAG.h include/agrum/BN/learning/constraints/structuralConstraintDAG_inl.h @@ -180,30 +180,32 @@ include/agrum/BN/learning/localSearchWithTabuList.h include/agrum/BN/learning/localSearchWithTabuList_inl.h include/agrum/BN/learning/localSearchWithTabuList_tpl.h include/agrum/BN/learning/paramUtils/DAG2BNLearner.h +include/agrum/BN/learning/paramUtils/DAG2BNLearner_inl.h include/agrum/BN/learning/paramUtils/DAG2BNLearner_tpl.h include/agrum/BN/learning/paramUtils/paramEstimator.h include/agrum/BN/learning/paramUtils/paramEstimatorML.h -include/agrum/BN/learning/paramUtils/paramEstimatorML_tpl.h +include/agrum/BN/learning/paramUtils/paramEstimatorML_inl.h +include/agrum/BN/learning/paramUtils/paramEstimator_inl.h include/agrum/BN/learning/paramUtils/paramEstimator_tpl.h include/agrum/BN/learning/scores_and_tests/score.h include/agrum/BN/learning/scores_and_tests/scoreAIC.h -include/agrum/BN/learning/scores_and_tests/scoreAIC_tpl.h +include/agrum/BN/learning/scores_and_tests/scoreAIC_inl.h include/agrum/BN/learning/scores_and_tests/scoreBD.h -include/agrum/BN/learning/scores_and_tests/scoreBD_tpl.h +include/agrum/BN/learning/scores_and_tests/scoreBD_inl.h include/agrum/BN/learning/scores_and_tests/scoreBDeu.h -include/agrum/BN/learning/scores_and_tests/scoreBDeu_tpl.h +include/agrum/BN/learning/scores_and_tests/scoreBDeu_inl.h include/agrum/BN/learning/scores_and_tests/scoreBIC.h -include/agrum/BN/learning/scores_and_tests/scoreBIC_tpl.h +include/agrum/BN/learning/scores_and_tests/scoreBIC_inl.h include/agrum/BN/learning/scores_and_tests/scoreK2.h -include/agrum/BN/learning/scores_and_tests/scoreK2_tpl.h +include/agrum/BN/learning/scores_and_tests/scoreK2_inl.h include/agrum/BN/learning/scores_and_tests/scoreLog2Likelihood.h -include/agrum/BN/learning/scores_and_tests/scoreLog2Likelihood_tpl.h +include/agrum/BN/learning/scores_and_tests/scoreLog2Likelihood_inl.h include/agrum/BN/learning/scores_and_tests/scoreMDL.h -include/agrum/BN/learning/scores_and_tests/score_tpl.h +include/agrum/BN/learning/scores_and_tests/score_inl.h include/agrum/BN/learning/scores_and_tests/scorefNML.h -include/agrum/BN/learning/scores_and_tests/scorefNML_tpl.h +include/agrum/BN/learning/scores_and_tests/scorefNML_inl.h include/agrum/BN/learning/scores_and_tests/scoringCache.h -include/agrum/BN/learning/scores_and_tests/scoringCache_tpl.h +include/agrum/BN/learning/scores_and_tests/scoringCache_inl.h include/agrum/BN/learning/structureUtils/IGraphChangesGenerator4DiGraph.h include/agrum/BN/learning/structureUtils/IGraphChangesGenerator4UndiGraph.h include/agrum/BN/learning/structureUtils/graphChange.h @@ -452,8 +454,7 @@ include/agrum/PRM/utils_prm.h include/agrum/PRM/utils_prm_tpl.h include/agrum/agrum.h include/agrum/config.h -include/agrum/tools/core/OMPThreads.h -include/agrum/tools/core/OMPThreads_inl.h +include/agrum/tools/core/IThreadNumberManager.h include/agrum/tools/core/approximations/IApproximationSchemeConfiguration.h include/agrum/tools/core/approximations/IApproximationSchemeConfiguration_inl.h include/agrum/tools/core/approximations/approximationPolicy.h @@ -509,7 +510,7 @@ include/agrum/tools/core/math/pow_inl.h include/agrum/tools/core/math/rational.h include/agrum/tools/core/math/rational_tpl.h include/agrum/tools/core/math/variableLog2ParamComplexity.h -include/agrum/tools/core/math/variableLog2ParamComplexity_tpl.h +include/agrum/tools/core/math/variableLog2ParamComplexity_inl.h include/agrum/tools/core/multiPriorityQueue.h include/agrum/tools/core/multiPriorityQueue_tpl.h include/agrum/tools/core/mvsc/dirent.h @@ -543,9 +544,21 @@ include/agrum/tools/core/smallobjectallocator/smallObjectAllocator.h include/agrum/tools/core/smallobjectallocator/smallObjectAllocator_inl.h include/agrum/tools/core/splay.h include/agrum/tools/core/splay_tpl.h -include/agrum/tools/core/thread.h include/agrum/tools/core/threadData.h -include/agrum/tools/core/thread_inl.h +include/agrum/tools/core/threadExecutor.h +include/agrum/tools/core/threadExecutorBase.h +include/agrum/tools/core/threadExecutorBase_inl.h +include/agrum/tools/core/threadExecutorOMP.h +include/agrum/tools/core/threadExecutorOMP_tpl.h +include/agrum/tools/core/threadExecutorSTL.h +include/agrum/tools/core/threadExecutorSTL_tpl.h +include/agrum/tools/core/threadNumberManager.h +include/agrum/tools/core/threadNumberManager_inl.h +include/agrum/tools/core/threads.h +include/agrum/tools/core/threadsOMP.h +include/agrum/tools/core/threadsOMP_inl.h +include/agrum/tools/core/threadsSTL.h +include/agrum/tools/core/threadsSTL_inl.h include/agrum/tools/core/timer.h include/agrum/tools/core/timer_inl.h include/agrum/tools/core/types.h @@ -558,58 +571,64 @@ include/agrum/tools/core/utils_random_tpl.h include/agrum/tools/core/utils_string.h include/agrum/tools/core/utils_string_inl.h include/agrum/tools/database/CSVParser.h -include/agrum/tools/database/CSVParser_tpl.h +include/agrum/tools/database/CSVParser_inl.h include/agrum/tools/database/DBCell.h include/agrum/tools/database/DBCell_inl.h -include/agrum/tools/database/DBCell_tpl.h include/agrum/tools/database/DBHandler.h include/agrum/tools/database/DBInitializerFromCSV.h -include/agrum/tools/database/DBInitializerFromCSV_tpl.h +include/agrum/tools/database/DBInitializerFromCSV_inl.h include/agrum/tools/database/DBInitializerFromSQL.h -include/agrum/tools/database/DBInitializerFromSQL_tpl.h +include/agrum/tools/database/DBInitializerFromSQL_inl.h include/agrum/tools/database/DBRow.h include/agrum/tools/database/DBRowGenerator.h include/agrum/tools/database/DBRowGenerator4CompleteRows.h -include/agrum/tools/database/DBRowGenerator4CompleteRows_tpl.h +include/agrum/tools/database/DBRowGenerator4CompleteRows_inl.h include/agrum/tools/database/DBRowGeneratorEM.h include/agrum/tools/database/DBRowGeneratorEM_tpl.h include/agrum/tools/database/DBRowGeneratorIdentity.h -include/agrum/tools/database/DBRowGeneratorIdentity_tpl.h +include/agrum/tools/database/DBRowGeneratorIdentity_inl.h include/agrum/tools/database/DBRowGeneratorParser.h +include/agrum/tools/database/DBRowGeneratorParser_inl.h include/agrum/tools/database/DBRowGeneratorParser_tpl.h include/agrum/tools/database/DBRowGeneratorSet.h +include/agrum/tools/database/DBRowGeneratorSet_inl.h include/agrum/tools/database/DBRowGeneratorSet_tpl.h include/agrum/tools/database/DBRowGeneratorWithBN.h include/agrum/tools/database/DBRowGeneratorWithBN_tpl.h -include/agrum/tools/database/DBRowGenerator_tpl.h +include/agrum/tools/database/DBRowGenerator_inl.h include/agrum/tools/database/DBRow_tpl.h include/agrum/tools/database/DBTranslatedValue.h include/agrum/tools/database/DBTranslator.h include/agrum/tools/database/DBTranslator4ContinuousVariable.h +include/agrum/tools/database/DBTranslator4ContinuousVariable_inl.h include/agrum/tools/database/DBTranslator4ContinuousVariable_tpl.h include/agrum/tools/database/DBTranslator4DiscretizedVariable.h +include/agrum/tools/database/DBTranslator4DiscretizedVariable_inl.h include/agrum/tools/database/DBTranslator4DiscretizedVariable_tpl.h include/agrum/tools/database/DBTranslator4IntegerVariable.h -include/agrum/tools/database/DBTranslator4IntegerVariable_tpl.h +include/agrum/tools/database/DBTranslator4IntegerVariable_inl.h include/agrum/tools/database/DBTranslator4LabelizedVariable.h -include/agrum/tools/database/DBTranslator4LabelizedVariable_tpl.h +include/agrum/tools/database/DBTranslator4LabelizedVariable_inl.h include/agrum/tools/database/DBTranslator4RangeVariable.h -include/agrum/tools/database/DBTranslator4RangeVariable_tpl.h +include/agrum/tools/database/DBTranslator4RangeVariable_inl.h include/agrum/tools/database/DBTranslatorSet.h +include/agrum/tools/database/DBTranslatorSet_inl.h include/agrum/tools/database/DBTranslatorSet_tpl.h include/agrum/tools/database/DBTranslatorUtils.h -include/agrum/tools/database/DBTranslatorUtils_tpl.h -include/agrum/tools/database/DBTranslator_tpl.h +include/agrum/tools/database/DBTranslatorUtils_inl.h +include/agrum/tools/database/DBTranslator_inl.h include/agrum/tools/database/IDBInitializer.h +include/agrum/tools/database/IDBInitializer_inl.h include/agrum/tools/database/IDBInitializer_tpl.h include/agrum/tools/database/IDatabaseTable.h include/agrum/tools/database/IDatabaseTable_tpl.h include/agrum/tools/database/databaseTable.h +include/agrum/tools/database/databaseTable_inl.h include/agrum/tools/database/databaseTable_tpl.h include/agrum/tools/database/nanodbcParser.h -include/agrum/tools/database/nanodbcParser_tpl.h +include/agrum/tools/database/nanodbcParser_inl.h include/agrum/tools/database/rawDatabaseTable.h -include/agrum/tools/database/rawDatabaseTable_tpl.h +include/agrum/tools/database/rawDatabaseTable_inl.h include/agrum/tools/external/lrslib/lrslib.h include/agrum/tools/external/lrslib/lrslong.h include/agrum/tools/external/lrslib/lrsmp.h @@ -626,34 +645,31 @@ include/agrum/tools/graphicalModels/graphicalModel.h include/agrum/tools/graphicalModels/graphicalModel_inl.h include/agrum/tools/graphicalModels/inference/graphicalModelInference.h include/agrum/tools/graphicalModels/inference/graphicalModelInference_tpl.h +include/agrum/tools/graphicalModels/inference/scheduler/IScheduleMultiDim.h +include/agrum/tools/graphicalModels/inference/scheduler/IScheduleMultiDim_inl.h include/agrum/tools/graphicalModels/inference/scheduler/schedule.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleCliqueStoreMultiDim.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleCliqueStoreMultiDim_tpl.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleCombination.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleCombinationBasic.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleCombinationBasic_tpl.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleCombination_tpl.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleCombine.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleCombine_tpl.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleDeleteMultiDim.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleDeleteMultiDim_tpl.h +include/agrum/tools/graphicalModels/inference/scheduler/scheduleBinaryCombination.h +include/agrum/tools/graphicalModels/inference/scheduler/scheduleBinaryCombination_tpl.h +include/agrum/tools/graphicalModels/inference/scheduler/scheduleDeletion.h +include/agrum/tools/graphicalModels/inference/scheduler/scheduleDeletion_tpl.h include/agrum/tools/graphicalModels/inference/scheduler/scheduleMultiDim.h include/agrum/tools/graphicalModels/inference/scheduler/scheduleMultiDim_tpl.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleOperation.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleOperation_tpl.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleProject.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleProject_tpl.h +include/agrum/tools/graphicalModels/inference/scheduler/scheduleOperator.h +include/agrum/tools/graphicalModels/inference/scheduler/scheduleOperator_inl.h include/agrum/tools/graphicalModels/inference/scheduler/scheduleProjection.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleProjectionBasic.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleProjectionBasic_tpl.h include/agrum/tools/graphicalModels/inference/scheduler/scheduleProjection_tpl.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleSeparatorStoreMultiDim.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduleSeparatorStoreMultiDim_tpl.h +include/agrum/tools/graphicalModels/inference/scheduler/scheduleStorage.h +include/agrum/tools/graphicalModels/inference/scheduler/scheduleStorage_tpl.h +include/agrum/tools/graphicalModels/inference/scheduler/schedule_inl.h include/agrum/tools/graphicalModels/inference/scheduler/schedule_tpl.h +include/agrum/tools/graphicalModels/inference/scheduler/scheduledInference.h +include/agrum/tools/graphicalModels/inference/scheduler/scheduledInference_inl.h include/agrum/tools/graphicalModels/inference/scheduler/scheduler.h -include/agrum/tools/graphicalModels/inference/scheduler/schedulerBasic.h -include/agrum/tools/graphicalModels/inference/scheduler/schedulerBasic_tpl.h -include/agrum/tools/graphicalModels/inference/scheduler/scheduler_tpl.h +include/agrum/tools/graphicalModels/inference/scheduler/schedulerParallel.h +include/agrum/tools/graphicalModels/inference/scheduler/schedulerParallel_inl.h +include/agrum/tools/graphicalModels/inference/scheduler/schedulerSequential.h +include/agrum/tools/graphicalModels/inference/scheduler/schedulerSequential_inl.h +include/agrum/tools/graphicalModels/inference/scheduler/scheduler_inl.h include/agrum/tools/graphicalModels/variableNodeMap.h include/agrum/tools/graphicalModels/variableNodeMap_inl.h include/agrum/tools/graphs/DAG.h @@ -841,20 +857,21 @@ include/agrum/tools/multidim/utils/patterns/projectionPattern4MultiDimArray.h include/agrum/tools/multidim/utils/patterns/projectionPattern4MultiDimFunctionGraph.h include/agrum/tools/multidim/utils/patterns/projectionPattern4MultiDimImplementation.h include/agrum/tools/stattests/correctedMutualInformation.h -include/agrum/tools/stattests/correctedMutualInformation_tpl.h +include/agrum/tools/stattests/correctedMutualInformation_inl.h include/agrum/tools/stattests/idCondSet.h -include/agrum/tools/stattests/idCondSet_tpl.h +include/agrum/tools/stattests/idCondSet_inl.h include/agrum/tools/stattests/indepTestChi2.h -include/agrum/tools/stattests/indepTestChi2_tpl.h +include/agrum/tools/stattests/indepTestChi2_inl.h include/agrum/tools/stattests/indepTestG2.h -include/agrum/tools/stattests/indepTestG2_tpl.h +include/agrum/tools/stattests/indepTestG2_inl.h include/agrum/tools/stattests/independenceTest.h -include/agrum/tools/stattests/independenceTest_tpl.h +include/agrum/tools/stattests/independenceTest_inl.h include/agrum/tools/stattests/kNML.h -include/agrum/tools/stattests/kNML_tpl.h +include/agrum/tools/stattests/kNML_inl.h include/agrum/tools/stattests/pseudoCount.h -include/agrum/tools/stattests/pseudoCount_tpl.h +include/agrum/tools/stattests/pseudoCount_inl.h include/agrum/tools/stattests/recordCounter.h +include/agrum/tools/stattests/recordCounter_inl.h include/agrum/tools/stattests/recordCounter_tpl.h include/agrum/tools/variables/IContinuousVariable.h include/agrum/tools/variables/IContinuousVariable_inl.h @@ -881,7 +898,7 @@ lib/cmake/aGrUM/aGrUMUse.cmake lib/cmake/aGrUM/agrum-targets-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/aGrUM/agrum-targets.cmake lib/libagrum.so -lib/libagrum.so.0 +lib/libagrum.so.1 lib/libagrum.so.%%VERSION%% %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum-%%VERSION%%-py%%PYTHON_VER_MAJ%%.egg-info %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum-%%VERSION%%.dist-info/METADATA @@ -913,6 +930,7 @@ lib/libagrum.so.%%VERSION%% %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/dynamicBN.py %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/explain.py %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/id2graph.py +%%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/image.py %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/ipython.py %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/mn2graph.py %%PYTHON%%%%PYTHON_SITELIBDIR%%/pyAgrum/lib/notebook.py
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