From nobody Tue Jan 14 03:26:20 2025 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4YXF0D6ktHz5j2PQ; Tue, 14 Jan 2025 03:26:20 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4YXF0D3v1Zz3Sy8; Tue, 14 Jan 2025 03:26:20 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1736825180; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=nOVtQE28XAl3pcaVJRQwGdtrDgvHZEOg+wOPegqM4Ds=; b=JH6C3VGtMCgT/nOjPMVxCo/NZtWOyYjKXxO6y8RK/pzaHrOmfQnHqSjeX2X1dB0MVj4SKF reCn0PX77XI23w2S+XwU9GYvAA09YxrxzV0LY0LnjkPTaEFlHeNFwhrZp5cLCHB8jqATYT k0XwLfv0JvSzPaLHIua42MdaaxV3m6eXslQx2BEhTEyrO4p89P6dIwR4fETfHbK71FtAtg k5z4hXulUvQSU/X3saxrsIvy3U9w3AyrPbcKW15k9YQejg1mFRdxboWhzCfmzeF/Pc8886 Al6H6ItOFad+N3xi0mHv9SLwXE4hcvieMixEeYSavV4ygofidtdpSa7+RllZuQ== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1736825180; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=nOVtQE28XAl3pcaVJRQwGdtrDgvHZEOg+wOPegqM4Ds=; b=ZbFs4Syz8QYVQJL0tDZmVz+LP2l7+nLc6LxsjKxGyhQat7XbvnaSxaIk05iB4U+IysKvhp lyAmrUQFjkHURwxScPTAdc77vooVg93ZAZKdmPwdCpn4gkNv2PYWaAEK4NM0Dkx4XUFI8d mczavQgiPvqoaz/9z2y+U/C5QbBdXlRun5qObH4ZURn+sHgRyGcCqwNNFyveiFfUc+38xR FXdjXOuimqcQm6XNDk+YOIWTQusbbPBi8TTXfJv67XCf8mmkuxNJnGX6Glfs7RNQqpl00N shyw5o8nFI+sORzTq7h7+n1d+hunhxg0SWWgsFzGoIXr3GpCmll4VV+ZRKh6MQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1736825180; a=rsa-sha256; cv=none; b=lzM3DhmBCLFwz6LceNGzTPNEjOvTu1Jr8BM37n+UWBhLesSKD9ceAhy8abz0EHvZhemIU8 4UnKMy+coDCK3rfUJqILZ0qdZv04k2aFQ65exMRklLoQVNmTJPvbh1wtXvXNoxYG9k4/0J VYEVDdj9cASEmy6man7lnAM4hW/xAWWTL79elYNolyMviBkG2ply0yA6ojBSOxjwIRFn3n 5Tv/SE6l6HVtmbsVcUQzPyurjwSDvJ6QBMZFydgv1ktQtWGsRLkjsggRWTYDQhVjlCpGqK 5DZPHMBQVaH/7RgF4Wf466GJ64Ker1X23eN8tR8mgiHedW7yZpBUMTm9AFTv3g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4YXF0D3QkTz104h; Tue, 14 Jan 2025 03:26:20 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.18.1/8.18.1) with ESMTP id 50E3QKp4040558; Tue, 14 Jan 2025 03:26:20 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.18.1/8.18.1/Submit) id 50E3QKho040555; Tue, 14 Jan 2025 03:26:20 GMT (envelope-from git) Date: Tue, 14 Jan 2025 03:26:20 GMT Message-Id: <202501140326.50E3QKho040555@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 08fa8f9c4bbe - main - biology/py-scikit-bio: update 0.6.2 =?utf-8?Q?=E2=86=92?= 0.6.3 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 08fa8f9c4bbe32743a414305614fc6e9371d8e1b Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=08fa8f9c4bbe32743a414305614fc6e9371d8e1b commit 08fa8f9c4bbe32743a414305614fc6e9371d8e1b Author: Yuri Victorovich AuthorDate: 2025-01-14 01:51:33 +0000 Commit: Yuri Victorovich CommitDate: 2025-01-14 03:26:05 +0000 biology/py-scikit-bio: update 0.6.2 → 0.6.3 --- biology/py-scikit-bio/Makefile | 11 ++++++++--- biology/py-scikit-bio/distinfo | 6 +++--- 2 files changed, 11 insertions(+), 6 deletions(-) diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile index 03efdcfe9af3..4297e08f2c1c 100644 --- a/biology/py-scikit-bio/Makefile +++ b/biology/py-scikit-bio/Makefile @@ -1,5 +1,5 @@ PORTNAME= scikit-bio -DISTVERSION= 0.6.2 +DISTVERSION= 0.6.3 CATEGORIES= biology education python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -34,10 +34,9 @@ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biom-format>0:biology/py-biom-format@${PY_FL ${PYTHON_PKGNAMEPREFIX}statsmodels>=0.14.0:math/py-statsmodels@${PY_FLAVOR} USES= python -USE_PYTHON= pep517 cython autoplist pytest # tests fail to run, see https://github.com/biocore/scikit-bio/issues/1846 +USE_PYTHON= pep517 cython autoplist pytest TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} -TEST_WRKSRC= ${WRKSRC}/skbio/tests CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}ddtrace # lib/python3.8/site-packages/benchmarks/__init__.py @@ -53,4 +52,10 @@ post-install: ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*${PYTHON_EXT_SUFFIX}.so \ ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*/*${PYTHON_EXT_SUFFIX}.so +do-test: # tests fail to run in a regular way, see https://github.com/biocore/scikit-bio/issues/1846 + @cd ${STAGEDIR}${PYTHON_SITELIBDIR} && \ + ${SETENV} ${TEST_ENV} pytest . + +# tests as of 0.6.3: 2792 passed, 30 skipped, 56 warnings in 250.28s (0:04:10) + .include diff --git a/biology/py-scikit-bio/distinfo b/biology/py-scikit-bio/distinfo index fa11401cb467..370eba0445bd 100644 --- a/biology/py-scikit-bio/distinfo +++ b/biology/py-scikit-bio/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1720838021 -SHA256 (scikit-bio-0.6.2.tar.gz) = af217ad12243cdaeef74a8f3bebe0d04aefda2a22d963d634201a36318b1a404 -SIZE (scikit-bio-0.6.2.tar.gz) = 2699488 +TIMESTAMP = 1736808587 +SHA256 (scikit-bio-0.6.3.tar.gz) = f06cc87a1823902906821819e66f7cd704563a9f8cdf6720296a42dcbc2fe1c2 +SIZE (scikit-bio-0.6.3.tar.gz) = 5356619