From owner-freebsd-ports@freebsd.org Mon Mar 30 19:29:55 2020 Return-Path: Delivered-To: freebsd-ports@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 53293265059 for ; Mon, 30 Mar 2020 19:29:55 +0000 (UTC) (envelope-from saper@saper.info) Received: from mailman.nyi.freebsd.org (mailman.nyi.freebsd.org [IPv6:2610:1c1:1:606c::50:13]) by mx1.freebsd.org (Postfix) with ESMTP id 48rjG755s9z4VtX for ; Mon, 30 Mar 2020 19:29:51 +0000 (UTC) (envelope-from saper@saper.info) Received: by mailman.nyi.freebsd.org (Postfix) id 18595265058; Mon, 30 Mar 2020 19:29:49 +0000 (UTC) Delivered-To: ports@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 103C8265056 for ; Mon, 30 Mar 2020 19:29:49 +0000 (UTC) (envelope-from saper@saper.info) Received: from m.saper.info (m.saper.info [IPv6:2a01:4f8:a0:7383::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "saper.info", Issuer "Let's Encrypt Authority X3" (not verified)) by mx1.freebsd.org (Postfix) with ESMTPS id 48rjG15kXJz4Vpq for ; Mon, 30 Mar 2020 19:29:45 +0000 (UTC) (envelope-from saper@saper.info) Received: from m.saper.info (saper@m.saper.info [IPv6:2a01:4f8:a0:7383:0:0:0:0]) by m.saper.info (8.15.2/8.15.2) with ESMTPS id 02UJTXqi051777 (version=TLSv1.3 cipher=TLS_AES_256_GCM_SHA384 bits=256 verify=NO); Mon, 30 Mar 2020 19:29:33 GMT (envelope-from saper@saper.info) DKIM-Signature: v=1; a=rsa-sha256; c=simple/simple; d=saper.info; s=Sep2014; t=1585596574; bh=G0+R9H+NyZEqfMsj7WkQCFqBnBNaOj3d9gO9InQdfAg=; h=Date:From:To:cc:Subject:In-Reply-To:References; b=VdPbQudsUbXk8h+s6QfbTQHQsh6EmXgtnfR9QIzA39IB5ZPRTTAD6Y7VjehKBkx0N gSd+iKgcSEysznhrsFvrZpOAs0HaSucKRyT4v2QbWM033fOoDdZQTLrSC0EJ7MCELd cfYBlzJBHQsGzyGtuqAsPq3BAhxyxkVmyrcNW25s= Received: from localhost (saper@localhost) by m.saper.info (8.15.2/8.15.2/Submit) with ESMTP id 02UJTXin051774; Mon, 30 Mar 2020 19:29:33 GMT (envelope-from saper@saper.info) X-Authentication-Warning: m.saper.info: saper owned process doing -bs Date: Mon, 30 Mar 2020 19:29:32 +0000 From: Marcin Cieslak To: Kevin Oberman cc: ajtiM , FreeBSD Ports Subject: Re: hdf5 update and problem In-Reply-To: Message-ID: References: <20200329161631.0277008c@dismail.de> MIME-Version: 1.0 Content-Type: multipart/signed; protocol="application/pkcs7-signature"; micalg=sha-256; boundary="1563967779-728759769-1585596573=:92661" X-Rspamd-Queue-Id: 48rjG15kXJz4Vpq X-Spamd-Bar: ------- Authentication-Results: mx1.freebsd.org; dkim=pass header.d=saper.info header.s=Sep2014 header.b=VdPbQuds; dmarc=none; spf=none (mx1.freebsd.org: domain of saper@saper.info has no SPF policy when checking 2a01:4f8:a0:7383::) smtp.mailfrom=saper@saper.info X-Spamd-Result: default: False [-7.20 / 15.00]; ARC_NA(0.00)[]; NEURAL_HAM_MEDIUM(-1.00)[-1.000,0]; R_DKIM_ALLOW(-0.20)[saper.info:s=Sep2014]; FROM_HAS_DN(0.00)[]; SIGNED_SMIME(-2.00)[]; RCPT_COUNT_THREE(0.00)[3]; HAS_ATTACHMENT(0.00)[]; HAS_XAW(0.00)[]; DMARC_NA(0.00)[saper.info]; MIME_GOOD(-0.20)[multipart/signed,text/plain]; NEURAL_HAM_LONG(-1.00)[-1.000,0]; TO_MATCH_ENVRCPT_SOME(0.00)[]; TO_DN_ALL(0.00)[]; DKIM_TRACE(0.00)[saper.info:+]; R_SPF_NA(0.00)[]; FREEMAIL_TO(0.00)[gmail.com]; FROM_EQ_ENVFROM(0.00)[]; MIME_TRACE(0.00)[0:+,1:+,2:~]; RCVD_TLS_LAST(0.00)[]; ASN(0.00)[asn:24940, ipnet:2a01:4f8::/29, country:DE]; RCVD_COUNT_TWO(0.00)[2]; IP_SCORE(-2.80)[ip: (-9.81), ipnet: 2a01:4f8::/29(-2.59), asn: 24940(-1.56), country: DE(-0.02)] X-BeenThere: freebsd-ports@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: Porting software to FreeBSD List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 30 Mar 2020 19:29:55 -0000 --1563967779-728759769-1585596573=:92661 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: 8BIT On Sun, 29 Mar 2020, Kevin Oberman wrote: > On Sun, Mar 29, 2020 at 1:18 PM ajtiM via freebsd-ports < > freebsd-ports@freebsd.org> wrote: > >> Hi! >> >> After update of hdf5 there are problems with blender which doesn't >> build anymore: >> executing: /usr/ports/graphics/blender/work/.build/bin/blender --help >> ld-elf.so.1: Shared object "libhdf5.so.103" not found, required by >> "libAlembic.so.1.7" Traceback (most recent call last): >> File "blender.1.py", line 56, in >> >> Also there is a problem with graphics/vigra too, >> >> Thank you. >> >> >> -- >> Ernst Lubitsch’s Ninotchka: > > > The source of libAlembic.so needs to be rebuilt to support the updated hdf5. > I don't use blender, but the generic answer is: > # pkg which libAlembic.so.1.7 > The response is the port that is still linked to the hold hdf5 shareable. > Rebuild it and that will fix this one. Also, notify whoever updated hdf5 > that the port needs a PORT_REVISION bump so that the package gets updated. Here I have: > pkg which /usr/local/lib/libAlembic.so.1.7 /usr/local/lib/libAlembic.so.1.7 was installed by package alembic-1.7.11_2 > ldd /usr/local/lib/libAlembic.so.1.7 /usr/local/lib/libAlembic.so.1.7: libImath-2_4.so.24 => /usr/local/lib/libImath-2_4.so.24 (0x80144a000) libIlmThread-2_4.so.24 => /usr/local/lib/libIlmThread-2_4.so.24 (0x80165c000) libIex-2_4.so.24 => /usr/local/lib/libIex-2_4.so.24 (0x801863000) libHalf-2_4.so.24 => /usr/local/lib/libHalf-2_4.so.24 (0x801ac9000) libm.so.5 => /lib/libm.so.5 (0x801d0c000) libhdf5.so.103 => /usr/local/lib/libhdf5.so.103 (0x802000000) libsz.so.2 => /usr/local/lib/libsz.so.2 (0x802598000) libz.so.6 => /lib/libz.so.6 (0x8027b0000) libdl.so.1 => /usr/lib/libdl.so.1 (0x8029c9000) libc++.so.1 => /usr/lib/libc++.so.1 (0x802bca000) libcxxrt.so.1 => /lib/libcxxrt.so.1 (0x802e99000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x8030b8000) libthr.so.3 => /lib/libthr.so.3 (0x8032cb000) libc.so.7 => /lib/libc.so.7 (0x800825000) libIexMath-2_4.so.24 => /usr/local/lib/libIexMath-2_4.so.24 (0x8034f4000) > pkg which /usr/local/lib/libhdf5.so.103 /usr/local/lib/libhdf5.so.103 was installed by package hdf5-1.10.6 You probably need to (re)install hdf5, but it should be enough to reinstall/upgrade alembic --1563967779-728759769-1585596573=:92661 Content-Type: application/pkcs7-signature; name=smime.p7s Content-Transfer-Encoding: BASE64 Content-Description: S/MIME Cryptographic Signature Content-Disposition: attachment; filename=smime.p7s MIIOSwYJKoZIhvcNAQcCoIIOPDCCDjgCAQExDzANBglghkgBZQMEAgEFADAL BgkqhkiG9w0BBwGgggqQMIIElzCCA3+gAwIBAgIOSBtqCKJEiNNcmz3JSA0w DQYJKoZIhvcNAQELBQAwTDEgMB4GA1UECxMXR2xvYmFsU2lnbiBSb290IENB IC0gUjMxEzARBgNVBAoTCkdsb2JhbFNpZ24xEzARBgNVBAMTCkdsb2JhbFNp Z24wHhcNMTYwNjE1MDAwMDAwWhcNMjQwNjE1MDAwMDAwWjBdMQswCQYDVQQG EwJCRTEZMBcGA1UEChMQR2xvYmFsU2lnbiBudi1zYTEzMDEGA1UEAxMqR2xv YmFsU2lnbiBQZXJzb25hbFNpZ24gMSBDQSAtIFNIQTI1NiAtIEczMIIBIjAN BgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyrCba00KOKyGuwh9h+/MAcZm 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