From nobody Tue Jul 19 02:11:07 2022 X-Original-To: dev-commits-ports-branches@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Ln2PR60N1z4Wdsc; Tue, 19 Jul 2022 02:11:07 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Ln2PR5Yknz3Mc6; Tue, 19 Jul 2022 02:11:07 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1658196667; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=soq5nMuRAapOjRCnDBJdSyRqANImWI2YT3Is1NqEAt0=; b=lIKiWP48/3f1DRdATLkkviUoob+uVNSG7zbIjuLy+87E4N53BveYZf20RSHJBqd7rit6ml PzV8KzvQ0QtYiweOGiLcKw6t9kplBHGvHkmx16SdUxSFha5zJcb2EM8b/0ENLFD9HWOf0X z+Mpwex1cFwf/IjAKJC1OTqVN7r8sK9RWe5b7EOY82NPW7dYm8mmvnXjzNxZVk47xkWP3r yD2S8+eR+kR92pArnGjuR8NduknZ4e/2m0blQNx7MVZjMpHse2yUVMwlumdDk0JhAWJnar TcI55vXPeNbdna8uXI1LQBLjARuallYtqzSmwLAIKHDKRchqOQBn63H1dycdoA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Ln2PR4cFGz121m; Tue, 19 Jul 2022 02:11:07 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 26J2B7ND080472; Tue, 19 Jul 2022 02:11:07 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 26J2B7XH080471; Tue, 19 Jul 2022 02:11:07 GMT (envelope-from git) Date: Tue, 19 Jul 2022 02:11:07 GMT Message-Id: <202207190211.26J2B7XH080471@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-branches@FreeBSD.org From: Yuri Victorovich Subject: git: f2be3d383cd5 - 2022Q3 - biology/py-pysam: Broken on arm64 and riscv64 List-Id: Commits to the quarterly branches of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-branches List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-branches@freebsd.org X-BeenThere: dev-commits-ports-branches@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/2022Q3 X-Git-Reftype: branch X-Git-Commit: f2be3d383cd58fcd9eb21919669d000bb2c177ab Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1658196667; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=soq5nMuRAapOjRCnDBJdSyRqANImWI2YT3Is1NqEAt0=; b=dSbKnvUjqIxC1vIaOifE/L/DfV1q2LdKUZQaRNAhdMykXealB+NpLQxVAykZJ3mhyJO63E l7o+55QnaB+uRrDYu6iMYXVjFos09yoS9HE4VD2aF+CZ1wo02F7b5Vgsace78QlKThRzR6 WjyJHSeIrt9TEkXGgixahP8mGbDiaAMYZaihF2hSvlJl7fsMVzzGgwx1vwi2ibtRoRn+kV EBMdBWTehTeIKSiW8yS+9W+K824P78zm/qKLrpThE9guO0XA2CFQ6BIBwEb6SMoYoovqYI q+zfHTdEbKDyt2yb4Ak42BNVeyEmHdBSTqTSrQ1ToYqc/gVJpXqk+iBrLzFXbg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1658196667; a=rsa-sha256; cv=none; b=xByv1PKmIren+HSvo+QbUAUJsZXsBAR59SxRBFEZow287hXpa//on5TnaScqlIAu7zc7r9 8YzIF/aim2zn0C+yLMbwzKKGd7Ejktmlz8qIWJuuAPD/SEoby8YxTVFCB025aXhrR/Vphs DdjFSooyje3OulcYIrlXXxMndkrhgL57mUrUbOsfCKF0r+vI3GtHkPnyHD06LQUcE1j8BC kEWOFitNmFFMnZYxCw4U5fYK9WOvclks2UuD1Mt3+i/g3F/hvpxjSKdCc9WF9ax1voltFm mYq1Gn4HUuiWtiU6Nfv2Le39KXoycqSd8WHwCvfoAUuC9sanfY2YWOT+A3hQjg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch 2022Q3 has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=f2be3d383cd58fcd9eb21919669d000bb2c177ab commit f2be3d383cd58fcd9eb21919669d000bb2c177ab Author: Yuri Victorovich AuthorDate: 2022-07-15 02:44:45 +0000 Commit: Yuri Victorovich CommitDate: 2022-07-19 02:11:04 +0000 biology/py-pysam: Broken on arm64 and riscv64 Reported by: fallout (cherry picked from commit 2f374bcdfe524d910349e06d52bde62047650b41) --- biology/py-pysam/Makefile | 3 +++ 1 file changed, 3 insertions(+) diff --git a/biology/py-pysam/Makefile b/biology/py-pysam/Makefile index d98fc9f8f29a..a000663bc8a6 100644 --- a/biology/py-pysam/Makefile +++ b/biology/py-pysam/Makefile @@ -10,6 +10,9 @@ COMMENT= Python module for reading, manipulating and writing genomic data sets LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING +BROKEN_arm64= conflicting symbol (libchtslib libcsamtools ...) : $d.6 +BROKEN_riscv6= conflicting symbol (libchtslib libcsamtools ...): .Lline_table_start0 + USES= gmake python:3.6-3.9 USE_PYTHON= autoplist distutils cython cython_run