From owner-svn-ports-all@freebsd.org Tue Jan 26 01:34:21 2021 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 630F14FA2CA; Tue, 26 Jan 2021 01:34:21 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4DPq5n2RJ6z4V40; Tue, 26 Jan 2021 01:34:21 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 469E520BE4; Tue, 26 Jan 2021 01:34:21 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 10Q1YLUV025652; Tue, 26 Jan 2021 01:34:21 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 10Q1YLXU025651; Tue, 26 Jan 2021 01:34:21 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <202101260134.10Q1YLXU025651@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Tue, 26 Jan 2021 01:34:21 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r562627 - head/biology/kallisto X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: head/biology/kallisto X-SVN-Commit-Revision: 562627 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 26 Jan 2021 01:34:21 -0000 Author: jwb Date: Tue Jan 26 01:34:20 2021 New Revision: 562627 URL: https://svnweb.freebsd.org/changeset/ports/562627 Log: biology/kallisto: Add -lz for pending hdf5 upgrade PR: 252965 Submitted by: thierry Modified: head/biology/kallisto/Makefile Modified: head/biology/kallisto/Makefile ============================================================================== --- head/biology/kallisto/Makefile Tue Jan 26 00:27:34 2021 (r562626) +++ head/biology/kallisto/Makefile Tue Jan 26 01:34:20 2021 (r562627) @@ -28,9 +28,10 @@ EXAMPLES_PLIST_FILES= bin/kallisto-test # hdf5 is being phased out and is no longer built in by default, but is still # required for Sleuth (requires kallisto bootstrap estimates) and other -# downstream tools. Remove this after Sleuth et all catch up. +# downstream tools. Remove this after Sleuth et al catch up. CMAKE_ARGS+= -DUSE_HDF5:BOOL=ON MAKE_JOBS_UNSAFE= yes +LDFLAGS+= -lz OPTIONS_DEFINE= EXAMPLES