Date: Tue, 20 Dec 2016 16:48:12 +0000 (UTC) From: Joseph Mingrone <jrm@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r429002 - head/biology/cd-hit Message-ID: <201612201648.uBKGmCxe058732@repo.freebsd.org>
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Author: jrm Date: Tue Dec 20 16:48:12 2016 New Revision: 429002 URL: https://svnweb.freebsd.org/changeset/ports/429002 Log: biology/cd-hit: Update to bug-fix release 4.6.6 Changes in version 4.6.6: Bug fix for cd-hit-dup in variable length input when write out R1 reads Changes in version 4.6.5: Add filter for -aL option so that short sequences will be skipped if not satisfy representative sequences' -aL requirement. This will make compute faster in clustering settings where sequences in the same cluster are required to have similar length using -aL -AL option (e.g. -aL 0.9). Approved by: AMDmi3 (mentor) swills (mentor) Differential Revision: https://reviews.freebsd.org/D8186 Modified: head/biology/cd-hit/Makefile head/biology/cd-hit/distinfo Modified: head/biology/cd-hit/Makefile ============================================================================== --- head/biology/cd-hit/Makefile Tue Dec 20 16:45:39 2016 (r429001) +++ head/biology/cd-hit/Makefile Tue Dec 20 16:48:12 2016 (r429002) @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= cd-hit -PORTVERSION= 4.6.4 -PORTREVISION= 1 +PORTVERSION= 4.6.6 DISTVERSIONPREFIX= V CATEGORIES= biology @@ -17,7 +16,6 @@ GH_ACCOUNT= weizhongli GH_PROJECT= cdhit USES= compiler:openmp gmake shebangfix -WRKSRC= ${WRKDIR}/cdhit-${PORTVERSION} SHEBANG_FILES= ${WRKSRC}/*.pl MAKE_FLAGS= openmp=yes Modified: head/biology/cd-hit/distinfo ============================================================================== --- head/biology/cd-hit/distinfo Tue Dec 20 16:45:39 2016 (r429001) +++ head/biology/cd-hit/distinfo Tue Dec 20 16:48:12 2016 (r429002) @@ -1,2 +1,3 @@ -SHA256 (weizhongli-cdhit-V4.6.4_GH0.tar.gz) = b170108147ec91d8b5f9d10b9e8d5fd971e7aef3af6ec1e5542cbaf10d54b2fc -SIZE (weizhongli-cdhit-V4.6.4_GH0.tar.gz) = 1148426 +TIMESTAMP = 1482076217 +SHA256 (weizhongli-cdhit-V4.6.6_GH0.tar.gz) = a0c89c969ad338f958620083b12bc69fa30fcba8246a7ec0b6243e5b2ba0365d +SIZE (weizhongli-cdhit-V4.6.6_GH0.tar.gz) = 1149112
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