Date: Tue, 20 Dec 2016 17:01:27 +0000 (UTC) From: Joseph Mingrone <jrm@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r429003 - head/biology/bowtie2 Message-ID: <201612201701.uBKH1RCp064377@repo.freebsd.org>
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Author: jrm Date: Tue Dec 20 17:01:27 2016 New Revision: 429003 URL: https://svnweb.freebsd.org/changeset/ports/429003 Log: biology/bowtie2: Update to version 2.2.9 - Update license information. - Add python to USES (bowtie2-build bowtie2-inspect need python) - Add DOCS and EXAMPLES options Approved by: AMDmi3 (mentor) swills (mentor) Differential Revision: https://reviews.freebsd.org/D8182 Modified: head/biology/bowtie2/Makefile head/biology/bowtie2/distinfo Modified: head/biology/bowtie2/Makefile ============================================================================== --- head/biology/bowtie2/Makefile Tue Dec 20 16:48:12 2016 (r429002) +++ head/biology/bowtie2/Makefile Tue Dec 20 17:01:27 2016 (r429003) @@ -1,25 +1,28 @@ # Created by: Jason Bacon # $FreeBSD$ -PORTNAME= bowtie2 -PORTVERSION= 2.2.8 +PORTNAME= bowtie2 +PORTVERSION= 2.2.9 DISTVERSIONPREFIX= v -CATEGORIES= biology +CATEGORIES= biology MAINTAINER= bacon4000@gmail.com COMMENT= Ultrafast, memory-efficient short read aligner -LICENSE= GPLv3 +LICENSE= GPLv3+ +LICENSE_FILE= ${WRKSRC}/LICENSE # May also work on other 64-bit platforms, but untested ONLY_FOR_ARCHS= amd64 -USES= gmake perl5 shebangfix +USES= gmake perl5 python shebangfix USE_PERL5= run -SHEBANG_FILES= scripts/*.pl +SHEBANG_FILES= bowtie2-build bowtie2-inspect scripts/*.pl USE_GITHUB= yes GH_ACCOUNT= BenLangmead +OPTIONS_DEFINE= DOCS EXAMPLES + post-install: ${MKDIR} ${STAGEDIR}${DATADIR}/scripts ${INSTALL_PROGRAM} \ @@ -30,11 +33,11 @@ post-install: ${WRKSRC}/scripts/*.sh \ ${WRKSRC}/scripts/*.pl \ ${STAGEDIR}${DATADIR}/scripts - cd ${WRKSRC}/example && ${COPYTREE_SHARE} \ - 'index reads reference' \ - ${STAGEDIR}${EXAMPLESDIR} - cd ${WRKSRC}/doc && ${COPYTREE_SHARE} \ - \* \ - ${STAGEDIR}${DOCSDIR} + +post-install-DOCS-on: + (cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) + +post-install-EXAMPLES-on: + (cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) .include <bsd.port.mk> Modified: head/biology/bowtie2/distinfo ============================================================================== --- head/biology/bowtie2/distinfo Tue Dec 20 16:48:12 2016 (r429002) +++ head/biology/bowtie2/distinfo Tue Dec 20 17:01:27 2016 (r429003) @@ -1,2 +1,3 @@ -SHA256 (BenLangmead-bowtie2-v2.2.8_GH0.tar.gz) = e4795f5779dfdefffcc9c341239c1fb6f7d78e15528c6094d9c580a5c0e87ac1 -SIZE (BenLangmead-bowtie2-v2.2.8_GH0.tar.gz) = 5814699 +TIMESTAMP = 1475861880 +SHA256 (BenLangmead-bowtie2-v2.2.9_GH0.tar.gz) = af940f77fc36aabea90d3d865724fd7ec7e250788d2d2f793c45c713d16ae5ee +SIZE (BenLangmead-bowtie2-v2.2.9_GH0.tar.gz) = 5815106
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